ID   AY943944; SV 1; linear; genomic RNA; STD; VRL; 1666 BP.
XX
AC   AY943944;
XX
DT   02-MAR-2006 (Rel. 87, Created)
DT   02-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Vanilla distortion mosaic virus isolate VM-40 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Vanilla distortion mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1666
RA   Smitha R., Jalali S., Krishnareddy M.;
RT   "Molecular characterization of a new potyvirus infecting vanilla (Vanilla
RT   planifolia)";
RL   Unpublished.
XX
RN   [2]
RP   1-1666
RA   Smitha R., Krishnareddy M.;
RT   ;
RL   Submitted (24-FEB-2005) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
DR   MD5; 65350468bf88f57cd5002c56d984d4a1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1666
FT                   /organism="Vanilla distortion mosaic virus"
FT                   /host="Vanilla planifolia"
FT                   /isolate="VM-40"
FT                   /ecotype="Mangalore"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /isolation_source="infected leaves"
FT                   /db_xref="taxon:326202"
FT   CDS             <1..1470
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q29TU2"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q29TU2"
FT                   /protein_id="AAY23363.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAMRYALLAEGIPNEEQNDICRYYVNG
FT                   DDLIIAVAPTHEELYDGMQSRFAQLGLNYDFSSRTRNKSELWFMSHQGVLRDGIFIPKL
FT                   EKERVVSILEWSRSSIPEHRLEAICAAMVEAWGYDDLVHEIREFYAWVLEQAPYNGLAQ
FT                   QGKAPYISEIALKSLYTSEEATESEIQRYLSACLNFYLNREEDDTVYHQGDKMDAGNPP
FT                   GKDKEITPATGSGEVSGGDKQIPGNQQVSKLDRDVNAGTSGTFQVPRIKTMTSKMRMPK
FT                   IRGKTALNLDHLLLYVPDQLDLSNTRATQKQFDYWYDNVSREYEVDDNKMQILLNGLMV
FT                   WCIENGTSPNIAGEWVMMDGAEQVTFPIKPLLEYAQPTFRQIMAHFSNVAEAYIEMRNM
FT                   KEPYMPRYGRMRNLNDMSLARYAFDFYEITSKTPSRAREAHMQMKAAALHGSISNMFGL
FT                   DGNVATTSENTERHTASDVNSNMHSLLGMRM"
FT   mat_peptide     <1..636
FT                   /product="NIb protein"
FT                   /note="nuclear inclusion body protein"
FT   mat_peptide     637..1467
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT   3'UTR           1471..1666
FT   polyA_site      1648
XX
SQ   Sequence 1666 BP; 543 A; 354 C; 402 G; 367 T; 0 other;
     ggtaataata gcgggcagcc atccacagtg gttgataaca cgctcatggt gatcctggcc        60
     atgcgatacg cattactcgc agaaggcatc cccaatgaag aacaaaatga catatgccga       120
     tattatgtca atggggatga tttaataatc gcagtggcac ctacacacga ggagttatac       180
     gacggcatgc aatctcgatt cgcacagctt ggtctcaact acgatttctc ttcgagaacg       240
     cgcaacaaat cggaattgtg gtttatgtcg caccagggcg tacttagaga cggcattttc       300
     atcccaaagt tggagaaaga aagagtagtc tcaatcttag agtggagtcg ttcgtcaatt       360
     ccagaacata ggctcgaggc aatctgcgca gctatggtgg aagcatgggg atatgatgat       420
     ttggtgcatg aaatccggga gttctatgca tgggttttgg aacaagcccc ttacaatgga       480
     ctggcccaac aggggaaagc tccatacatc tcggaaattg ccttaaagag cttatacaca       540
     tcggaggaag ctacagaaag tgagattcaa cgttatctat ccgcttgtct caacttctac       600
     ctaaacagag aagaggacga cacagtgtat catcaagggg acaagatgga tgcaggtaac       660
     cccccaggga aggacaagga aataacacct gccactggta gcggagaagt aagtgggggc       720
     gataaacaaa ttcctggcaa ccagcaggtc tccaaactag atagggatgt gaatgctgga       780
     acaagtggca ctttccaagt ccctagaatt aaaacgatga catcaaaaat gcgcatgcca       840
     aaaataagag gaaaaacggc tttgaatctc gatcaccttc tcctatacgt gccagatcag       900
     ctcgatttgt caaacacacg ggcaacgcag aagcaatttg attattggta cgacaatgtg       960
     agcagagagt atgaggtgga tgataacaaa atgcaaatac tgctcaatgg tctaatggtt      1020
     tggtgcattg aaaatggaac gtcacccaac attgcaggag aatgggtgat gatggacgga      1080
     gcggagcagg taacattccc aataaaaccg ctcctcgagt atgcgcaacc gaccttcaga      1140
     caaattatgg ctcacttcag caacgtggca gaggcataca tcgaaatgcg caatatgaaa      1200
     gagccataca tgccacgtta tggaagaatg cgaaacttga acgacatgag cctggcacgc      1260
     tacgcattcg acttctacga aataacgtcg aaaacaccat cacgcgcaag agaggcccac      1320
     atgcaaatga aggcagccgc actgcacggc agcatcagta acatgtttgg attggatggt      1380
     aatgtagcaa caacgagtga aaacacggaa aggcacacag cgagcgatgt aaacagtaac      1440
     atgcatagcc tcttaggcat gcgaatgtaa tatccactga ggtgtgtgct ggatgagtgt      1500
     atgactcaac cgaacagaac tacgtataat atttaagttt aaatttcatg tctttttatt      1560
     ctacgtaagt cctgtttcga agcagccatg ttagctttct tagtgaggtt ccacctcgtg      1620
     aaatctaatc catggaagcc tagagacaaa aaaaaaaaaa aaaaaa                     1666
//