Dbfetch
ID AY939926; SV 1; circular; genomic DNA; STD; VRL; 2684 BP. XX AC AY939926; XX DT 02-MAR-2006 (Rel. 87, Created) DT 02-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus segment A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2684 RA Rouhibakhsh A., Malathi V.G.; RT "Complete DNA A sequence of Tomato leaf curl New delhi virus causing severe RT leaf distortion mosaic in Luffa cylindrica in northern India"; RL Unpublished. XX RN [2] RP 1-2684 RA Rouhibakhsh A., Malathi V.G.; RT ; RL Submitted (20-FEB-2005) to the INSDC. RL Advanced Center for Plant Virology, Division of Plant Pathology, Indian RL Agricultural Research Institute, Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; 5053fccc4bf5be7a2ccbf2cae5e011c4. DR EuropePMC; PMC6460037; 30975814. XX FH Key Location/Qualifiers FH FT source 1..2684 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="A" FT /host="Luffa cylindrica" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="northern India" FT /note="transmitted by Whitefly; causes severe leaf FT distortion mosaic" FT /db_xref="taxon:223347" FT gene 41..403 FT /gene="AV2" FT CDS 41..403 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="has role in movement and symptom production" FT /db_xref="GOA:Q29UD5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q29UD5" FT /protein_id="AAY44734.1" FT /translation="MKFTLHGLFSDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTV FT GYDLVRDLILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKG FT LDQQADEQKTQNVQNV" FT gene 225..995 FT /gene="AV1" FT CDS 225..995 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q29UD4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q29UD4" FT /protein_id="AAY44733.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(255..617) FT /gene="AC5" FT CDS complement(255..617) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q29UD3" FT /protein_id="AAY44736.1" FT /translation="MVFCLDVFIHPYLPQHIDRFHTKSLPHAMCESSSSSNITNAHDFA FT NMRDIVPRFKRLHLTRAFTAPWHVGTPIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSS FT IGAVEVETSAYLRCGR" FT gene complement(992..1402) FT /gene="AC3" FT CDS complement(992..1402) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enhancer protein" FT /db_xref="GOA:Q29UD2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q29UD2" FT /protein_id="AAY44739.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVLEGTIDVWTSYDIKLDIY" FT gene complement(1122..1541) FT /gene="AC2" FT CDS complement(1122..1541) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transcription activator protein" FT /db_xref="GOA:Q29UD1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q29UD1" FT /protein_id="AAY44737.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLTCGCTYYISIN FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1444..2529) FT /gene="AC1" FT CDS complement(1444..2529) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication initiation protein" FT /db_xref="GOA:Q29UD0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q29UD0" FT /protein_id="AAY44735.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT gene complement(2123..2580) FT /gene="AC4" FT CDS complement(2196..2372) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q29UC9" FT /protein_id="AAY44738.1" FT /translation="MGLRISMFSSNSKGNSSARITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKMETF" XX SQ Sequence 2684 BP; 725 A; 583 C; 595 G; 781 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatttagt gatccattat tgcacgaatt tccagaaagc gttcatggtc taaggtgcat 120 gctagctgta aaatatctcc aagagataga gaagaactat tccccagaca cagtcggcta 180 cgatcttgtc cgagatctca ttcttgttct ccgagcaaag aactatggcg aagcgaccag 240 cagatatcat catttcaacg cccgcatcga aggtacgccg acgtctcaac ttcgacagcc 300 cctatggagc tcgtgcagtt gtccccattg cccgcgtcac aaaagcaaag gcctggacca 360 acaggccgat gaacagaaaa cccagaatgt acagaatgta taggagtccc gacgtgccaa 420 ggggctgtga aggcccttgt aaggtgcagt cttttgaatc taggcacgat gtctctcata 480 ttggcaaagt catgtgcgtt agtgatgtta ctcgaggaac tggactcaca catcgcgtgg 540 ggaagcgatt ttgtgtgaaa tctgtctatg tgctggggaa gatatggatg gatgaaaaca 600 tcaagacaaa aaaccatact aacagtgtca tgtttttttt agttcgtgac cgtcgtccta 660 caggatcccc tcaagatttt ggggaagttt ttaacatgtt tgacaatgaa ccgagcacag 720 caacggtgaa gaacatgcat cgtgatcgtt atcaagtctt acggaagtgg catgcgactg 780 tgacgggagg aacatatgca tctaaggagc aagcattagt taggaagttt gttagggtta 840 ataattatgt tgtttataat caacaagagg ccggcaagta tgagaatcat actgaaaacg 900 cattaatgtt gtatatggcc tgtactcacg catcaaatcc tgtatatgct actttgaaaa 960 tccggatcta cttttatgat tcggtcacaa attaataaat atccagtttt atatcatacg 1020 aagtccatac atcaattgtt ccctccaata cattatccaa tacatgataa actgctctta 1080 ttacattata aattcctatg acacctaaca tatccaggta cctaaggacc tgggttttga 1140 agactctcaa gaaaatccca atctgagggc gtaagcccgt ccagattttg aaagttagaa 1200 aacacttgtg aagtcccagg gctttccgca ggttgtggtt gaattgtatt tgaatcttga 1260 tgatgtcgtg ctgtgttagg aagggcctgc tgtcgtgttt caaaattttg aaatacaggg 1320 gatttcgaat ttcccaggta tatacgccac tctctgctcg atccgcagtg atgtactccc 1380 ctgtgcgtga atccgtgatc atggcagttg atcgatatat aatacgtaca cccacacgtc 1440 agatcaactc gcctcctgcg aatgctcttc ttcttcttct gtgggagcga tgttttcgcg 1500 accggaatag agtggttctt cgagtgtgat gaagactgca ttcttgattg cccactgctt 1560 cagtgctgca tttttttctt cgtccagata ttccttatag ctgctgtttg gacctttatt 1620 gcacaggaag atagtgggaa taccaccttt aatcatgact ggctttccgt acttcgtgtt 1680 gctttgccag tcacgctggg cccccatgaa ttctttaaag tgctttagat agtggggatc 1740 aacgtcatca atgacgttgt accaggcatc attgctatac acctttgggc tcagatcaag 1800 atgtccacat aagtaattgt ggggtcctaa gcaacgagcc cacattgttt tccctgttct 1860 actatccccc tctatgacta tgcttatggg cctaaaaggc cgcgcagcgg cacacacaac 1920 attgacactg gcccaatcga caagttctgg aggaactctg tcgaaggatg aaattgaaaa 1980 tggagaaacg taaacctcag aacgaggttg aaaaatgcga tctaaattgc ttattaaatt 2040 gtgaaactgc agaacataat cctttggggc taattccttt aatactttta atgcatcttc 2100 tttattcccc gtgttaatcg ccttagcata tgcgtcgttg gctgtctgct gaccaccacg 2160 agcagatcgt ccatcgatct ggaaaacacc ccattctaga acgtctccat ctttgtcgat 2220 gtatgctttg acatctgacg ctgatttagc tccctgaatg ttcggatgga aatgtgctga 2280 ccgacttggg gaaaccaagt cgaagaatct gttattcttg cactggaatt tcccttcgaa 2340 ttggatgaga acatggatat gcggagaccc atcctcgtga agctctctac agatcttgat 2400 gaatttcttc gcagttgggg tttctagggt ttgcaattgg gaaagtgcct cttctttagt 2460 tagagagcac tttggatatg tgaggaaata gtttttggca tctattctga aacgacgtgg 2520 cggagccata aaacttgtcg ttttgattcg gcgtccctca acttcctcta tgtaattggc 2580 gtctggcgtc ccatatatag gtaggacgct aaatggcaga attgtaattt tgaaaagaaa 2640 attactttaa ttcaaaatcc tcatagcggc cattcgttaa tatt 2684 //