ID   AY928514; SV 1; circular; genomic DNA; STD; VRL; 2618 BP.
XX
AC   AY928514;
XX
DT   21-SEP-2005 (Rel. 85, Created)
DT   21-SEP-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Pepper golden mosaic virus isolate PepGMV-D segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Pepper golden mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2618
RX   DOI; 10.1094/PHYTO-95-1217.
RX   PUBMED; 18943475.
RA   Brown J.K., Idris A.M., Ostraw K.M., Goldberg N., French R., Drake D.C.;
RT   "Genetic and Phenotypic Variation of the Pepper golden mosaic virus
RT   Complex";
RL   Phytopathology 95(10):1217-1224(2005).
XX
RN   [2]
RP   1-2618
RA   Brown J.K., Idris A.M., Stenger D.C.;
RT   ;
RL   Submitted (11-FEB-2005) to the INSDC.
RL   Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
XX
DR   MD5; 73918ebb568abe7a675a4cc799863e0e.
DR   EuropePMC; PMC2902183; 17532021.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2618
FT                   /organism="Pepper golden mosaic virus"
FT                   /segment="DNA-A"
FT                   /isolate="PepGMV-D"
FT                   /mol_type="genomic DNA"
FT                   /country="USA"
FT                   /db_xref="taxon:223301"
FT   CDS             210..965
FT                   /codon_start=1
FT                   /product="AV1"
FT                   /note="coat protein"
FT                   /db_xref="GOA:Q3MJQ8"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q3MJQ8"
FT                   /protein_id="AAY16457.1"
FT                   /translation="MVKRDAPWRLMAGTSKVSRSANYSRGTGMGPKFDKAAAWVNRPMY
FT                   RKPRIYRTFRSPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYCTPMDFGQVFNMYDNEPSTATV
FT                   KNDLRDRFQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(962..1360)
FT                   /codon_start=1
FT                   /product="AC3"
FT                   /note="replication enhancer; REn"
FT                   /db_xref="GOA:Q3MJQ7"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q3MJQ7"
FT                   /protein_id="AAY16460.1"
FT                   /translation="MDSRTGDSITVRQAENSVFIWEVPNPLFFRIQHVEDPLFTRTRIY
FT                   HIQVRFNHNLRRALALHKAYLHFQIWTTSMTASGTTYLSRFKFRVMLYLHRLGAIGINN
FT                   VIRAVRFATDKSYVNAVLENHEIKFKLY"
FT   CDS             complement(1107..1496)
FT                   /codon_start=1
FT                   /product="AC2"
FT                   /note="transcriptional transactivtor protein; TrAP"
FT                   /db_xref="GOA:Q3MJQ6"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q3MJQ6"
FT                   /protein_id="AAY16459.1"
FT                   /translation="MLNSSSSTLPSIKAQHRIAKKRTIRRRRIDLNCGCSIFLHINCAN
FT                   HGFTHRGQHHCASGREFRFYLGGSKSPIFQDTTCRGPVVHQDQDIPHPSPVQPQPTPSI
FT                   GSPQGIPSFPNLDDFDDSFWDDIFK"
FT   CDS             complement(1438..2487)
FT                   /codon_start=1
FT                   /product="AC1"
FT                   /note="replication initiator protein; Rep"
FT                   /db_xref="GOA:Q3MJQ5"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q3MJQ5"
FT                   /protein_id="AAY16458.1"
FT                   /translation="MPLPTKSFRLQCKNIFLTYPKCDIPKDEAIEMLRSLKWSVVKPIY
FT                   IRVAREEHSDGFPHLHCLIQLTGKCNIKDARFFDITHPRRSAQFHPNVQAAKDANAVKN
FT                   YITKEGDYCESGQYKVSGGSKANKDDVYYNAVNAASADEALDIIKAGDPKTFIVSYHNI
FT                   KANIERLFTTPPTPWNPPYPLSSFNNVPEDMQHWVAEYFGRSSAARPDRPISIVIEGDS
FT                   RSGKTMWARALGPHNYLSGHLDFNAKVYSNNVEYNVIDDITPQYLKLKHWKELIGAQKD
FT                   WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENASLRAWTQKNAQFVILHAP
FT                   LYKSTAQDC"
XX
SQ   Sequence 2618 BP; 675 A; 557 C; 629 G; 757 T; 0 other;
     actggatggc cgcgattttt ttggagtctt tgggggacca ctcagaatag agggctgaga        60
     ttaaatagat aaagagatgg gaccaccaat tataggatat ttgaccgacc aatcacatcc       120
     cgcctgtcaa gtctagatat ttgtgccttg gggaccaagg tgtggtccta taaatgcacg       180
     tgcatgtgca ttaacctctt taattcaaaa tggttaagcg ggatgcccca tggcgtttaa       240
     tggcggggac ctccaaggtt tcccgctcag ctaattattc acgtggcacg ggtatgggcc       300
     ctaaattcga taaggccgct gcttgggtta acaggcccat gtacaggaag cccaggatat       360
     atcggacgtt tagaagccca gatgttccta gaggttgtga agggccctgt aaagtccagt       420
     cattcgagca gcggcatgat atctcccatg ttgggaaggt catgtgcatt tcggacgtga       480
     cacgtggtaa cggtatcact catcgtgtag gcaagcgttt ctgcgtcaag tctgcatacg       540
     ttctgggtaa gatatggatg gacgagaata tcaagctcaa gaaccatacc aacagcgtca       600
     tgttctggct cgtgagagat aggagaccat attgtacccc tatggatttc ggtcaggtgt       660
     tcaacatgta tgacaacgag cccagtactg ccactgtgaa gaacgatctt cgtgatcgtt       720
     tccaagtcat gcacaggttc tcggctaagg tcacaggtgg acagtatgcc agcaacgagc       780
     aggcgttggt taggcgcttc tggaaggtga acaactacgt tgtctacaac caccaggaag       840
     ctggcaaata cgagaatcat actgagaacg ccctgttatt gtatatggca tgtactcatg       900
     catctaaccc cgtgtacgcg acattgaaaa ttcgaatcta tttttacgat tcgataacaa       960
     attaataaag tttgaatttt atttcatgat tctcaagtac agcatttaca taggatttgt      1020
     ccgtcgcaaa acgaacagct ctaattacat tgtttatgcc tatggcccct agcctatgta      1080
     aatataacat gacgcgaaat ttgaatctac ttaaatatgt cgtcccagaa gctgtcatcg      1140
     aagtcgtcca gatttggaaa tgaaggtatg ccttgtggag agccaatgct cggcgtaggt      1200
     tgtggttgaa ccggacttgg atgtggtata tcctggtcct ggtgaacaac gggtcctcta      1260
     catgttgtat cctgaaaaat aggggatttg gaacctccca aataaaaacg gaattctctg      1320
     cctgacgcac agtgatgctg tccccggtgc gtgaatccat gatttgcgca gttgatgtgg      1380
     aggaatatag agcagccgca gtttaggtct atgcgtcgtc tgcgaatagt tctcttctta      1440
     gcaatcctgt gctgtgcttt tatagagggg agcgtggagg atgacgaatt gagcattttt      1500
     ttgtgtccac gctctcaatg atgcattttc ttctttgttg aggaaagcta tatagctgct      1560
     accttcccct ggattgcaca gcacaattga tggtatcccg cctttaattt gaactggctt      1620
     tccgtattta cagttggact gccagtcttt ttgggcccca attagctctt tccagtgctt      1680
     tagctttaga tattggggcg tgatatcatc aatgacgtta tactccacat tgtttgaata      1740
     gacctttgca ttgaaatcaa gatgaccgct caaataatta tgtgggccta atgcacgtgc      1800
     ccacattgtc ttgccgcttc gcgaatcacc ctcaatgaca atactaatcg gtctatctgg      1860
     ccgcgcagcg gaactccgac caaaatattc agcaacccaa tgttgcatat cctcaggaac      1920
     gttgttaaac gaggataatg gatatggagg attccatggc gtaggaggag ttgtaaagag      1980
     gcgctcgatg ttagccttta tgttatgata actaacaatg aacgttttgg gatcaccagc      2040
     tttgattatg tcgagcgcct cgtccgcact tgcagcattt acagcgttat agtagacgtc      2100
     gtctttattt gctttggacc ccccggaaac tttgtactgc ccagattcac aataatcacc      2160
     ctcttttgtt atgtaatttt taacggcatt tgcgtctttg gctgcctgaa cgtttggatg      2220
     aaactgggca gacctccggg ggtgagtaat gtcgaagaat cgtgcatctt tgatgttgca      2280
     tttcccggtc aattggatta gacagtgcaa gtgcgggaac ccatcggaat gctcctctcg      2340
     tgctacccgg atgtagatag gtttaaccac tgaccatttt aaagaacgga gcatttcgat      2400
     agcttcatcc tttgggatat cgcattttgg atatgttaag aaaatgtttt tacattgtaa      2460
     gcgaaatgat tttgtaggta gtggcatttt tgcaaatatg atataggact ccagcagagt      2520
     ccctcaactt ctgtcatata ttgtggagtc ctggagtccc ttatatacat aaagcctctt      2580
     ggggactcca agggcaaaag cggccatcct ataatatt                              2618
//