Dbfetch
ID AY928514; SV 1; circular; genomic DNA; STD; VRL; 2618 BP. XX AC AY928514; XX DT 21-SEP-2005 (Rel. 85, Created) DT 21-SEP-2005 (Rel. 85, Last updated, Version 1) XX DE Pepper golden mosaic virus isolate PepGMV-D segment DNA-A, complete DE sequence. XX KW . XX OS Pepper golden mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2618 RX DOI; 10.1094/PHYTO-95-1217. RX PUBMED; 18943475. RA Brown J.K., Idris A.M., Ostraw K.M., Goldberg N., French R., Drake D.C.; RT "Genetic and Phenotypic Variation of the Pepper golden mosaic virus RT Complex"; RL Phytopathology 95(10):1217-1224(2005). XX RN [2] RP 1-2618 RA Brown J.K., Idris A.M., Stenger D.C.; RT ; RL Submitted (11-FEB-2005) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; 73918ebb568abe7a675a4cc799863e0e. DR EuropePMC; PMC2902183; 17532021. XX FH Key Location/Qualifiers FH FT source 1..2618 FT /organism="Pepper golden mosaic virus" FT /segment="DNA-A" FT /isolate="PepGMV-D" FT /mol_type="genomic DNA" FT /country="USA" FT /db_xref="taxon:223301" FT CDS 210..965 FT /codon_start=1 FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:Q3MJQ8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3MJQ8" FT /protein_id="AAY16457.1" FT /translation="MVKRDAPWRLMAGTSKVSRSANYSRGTGMGPKFDKAAAWVNRPMY FT RKPRIYRTFRSPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYCTPMDFGQVFNMYDNEPSTATV FT KNDLRDRFQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(962..1360) FT /codon_start=1 FT /product="AC3" FT /note="replication enhancer; REn" FT /db_xref="GOA:Q3MJQ7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3MJQ7" FT /protein_id="AAY16460.1" FT /translation="MDSRTGDSITVRQAENSVFIWEVPNPLFFRIQHVEDPLFTRTRIY FT HIQVRFNHNLRRALALHKAYLHFQIWTTSMTASGTTYLSRFKFRVMLYLHRLGAIGINN FT VIRAVRFATDKSYVNAVLENHEIKFKLY" FT CDS complement(1107..1496) FT /codon_start=1 FT /product="AC2" FT /note="transcriptional transactivtor protein; TrAP" FT /db_xref="GOA:Q3MJQ6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3MJQ6" FT /protein_id="AAY16459.1" FT /translation="MLNSSSSTLPSIKAQHRIAKKRTIRRRRIDLNCGCSIFLHINCAN FT HGFTHRGQHHCASGREFRFYLGGSKSPIFQDTTCRGPVVHQDQDIPHPSPVQPQPTPSI FT GSPQGIPSFPNLDDFDDSFWDDIFK" FT CDS complement(1438..2487) FT /codon_start=1 FT /product="AC1" FT /note="replication initiator protein; Rep" FT /db_xref="GOA:Q3MJQ5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3MJQ5" FT /protein_id="AAY16458.1" FT /translation="MPLPTKSFRLQCKNIFLTYPKCDIPKDEAIEMLRSLKWSVVKPIY FT IRVAREEHSDGFPHLHCLIQLTGKCNIKDARFFDITHPRRSAQFHPNVQAAKDANAVKN FT YITKEGDYCESGQYKVSGGSKANKDDVYYNAVNAASADEALDIIKAGDPKTFIVSYHNI FT KANIERLFTTPPTPWNPPYPLSSFNNVPEDMQHWVAEYFGRSSAARPDRPISIVIEGDS FT RSGKTMWARALGPHNYLSGHLDFNAKVYSNNVEYNVIDDITPQYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENASLRAWTQKNAQFVILHAP FT LYKSTAQDC" XX SQ Sequence 2618 BP; 675 A; 557 C; 629 G; 757 T; 0 other; actggatggc cgcgattttt ttggagtctt tgggggacca ctcagaatag agggctgaga 60 ttaaatagat aaagagatgg gaccaccaat tataggatat ttgaccgacc aatcacatcc 120 cgcctgtcaa gtctagatat ttgtgccttg gggaccaagg tgtggtccta taaatgcacg 180 tgcatgtgca ttaacctctt taattcaaaa tggttaagcg ggatgcccca tggcgtttaa 240 tggcggggac ctccaaggtt tcccgctcag ctaattattc acgtggcacg ggtatgggcc 300 ctaaattcga taaggccgct gcttgggtta acaggcccat gtacaggaag cccaggatat 360 atcggacgtt tagaagccca gatgttccta gaggttgtga agggccctgt aaagtccagt 420 cattcgagca gcggcatgat atctcccatg ttgggaaggt catgtgcatt tcggacgtga 480 cacgtggtaa cggtatcact catcgtgtag gcaagcgttt ctgcgtcaag tctgcatacg 540 ttctgggtaa gatatggatg gacgagaata tcaagctcaa gaaccatacc aacagcgtca 600 tgttctggct cgtgagagat aggagaccat attgtacccc tatggatttc ggtcaggtgt 660 tcaacatgta tgacaacgag cccagtactg ccactgtgaa gaacgatctt cgtgatcgtt 720 tccaagtcat gcacaggttc tcggctaagg tcacaggtgg acagtatgcc agcaacgagc 780 aggcgttggt taggcgcttc tggaaggtga acaactacgt tgtctacaac caccaggaag 840 ctggcaaata cgagaatcat actgagaacg ccctgttatt gtatatggca tgtactcatg 900 catctaaccc cgtgtacgcg acattgaaaa ttcgaatcta tttttacgat tcgataacaa 960 attaataaag tttgaatttt atttcatgat tctcaagtac agcatttaca taggatttgt 1020 ccgtcgcaaa acgaacagct ctaattacat tgtttatgcc tatggcccct agcctatgta 1080 aatataacat gacgcgaaat ttgaatctac ttaaatatgt cgtcccagaa gctgtcatcg 1140 aagtcgtcca gatttggaaa tgaaggtatg ccttgtggag agccaatgct cggcgtaggt 1200 tgtggttgaa ccggacttgg atgtggtata tcctggtcct ggtgaacaac gggtcctcta 1260 catgttgtat cctgaaaaat aggggatttg gaacctccca aataaaaacg gaattctctg 1320 cctgacgcac agtgatgctg tccccggtgc gtgaatccat gatttgcgca gttgatgtgg 1380 aggaatatag agcagccgca gtttaggtct atgcgtcgtc tgcgaatagt tctcttctta 1440 gcaatcctgt gctgtgcttt tatagagggg agcgtggagg atgacgaatt gagcattttt 1500 ttgtgtccac gctctcaatg atgcattttc ttctttgttg aggaaagcta tatagctgct 1560 accttcccct ggattgcaca gcacaattga tggtatcccg cctttaattt gaactggctt 1620 tccgtattta cagttggact gccagtcttt ttgggcccca attagctctt tccagtgctt 1680 tagctttaga tattggggcg tgatatcatc aatgacgtta tactccacat tgtttgaata 1740 gacctttgca ttgaaatcaa gatgaccgct caaataatta tgtgggccta atgcacgtgc 1800 ccacattgtc ttgccgcttc gcgaatcacc ctcaatgaca atactaatcg gtctatctgg 1860 ccgcgcagcg gaactccgac caaaatattc agcaacccaa tgttgcatat cctcaggaac 1920 gttgttaaac gaggataatg gatatggagg attccatggc gtaggaggag ttgtaaagag 1980 gcgctcgatg ttagccttta tgttatgata actaacaatg aacgttttgg gatcaccagc 2040 tttgattatg tcgagcgcct cgtccgcact tgcagcattt acagcgttat agtagacgtc 2100 gtctttattt gctttggacc ccccggaaac tttgtactgc ccagattcac aataatcacc 2160 ctcttttgtt atgtaatttt taacggcatt tgcgtctttg gctgcctgaa cgtttggatg 2220 aaactgggca gacctccggg ggtgagtaat gtcgaagaat cgtgcatctt tgatgttgca 2280 tttcccggtc aattggatta gacagtgcaa gtgcgggaac ccatcggaat gctcctctcg 2340 tgctacccgg atgtagatag gtttaaccac tgaccatttt aaagaacgga gcatttcgat 2400 agcttcatcc tttgggatat cgcattttgg atatgttaag aaaatgtttt tacattgtaa 2460 gcgaaatgat tttgtaggta gtggcatttt tgcaaatatg atataggact ccagcagagt 2520 ccctcaactt ctgtcatata ttgtggagtc ctggagtccc ttatatacat aaagcctctt 2580 ggggactcca agggcaaaag cggccatcct ataatatt 2618 //