ID AY924395; SV 1; linear; genomic RNA; STD; VRL; 7132 BP. XX AC AY924395; XX DT 02-DEC-2007 (Rel. 94, Created) DT 02-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Whitewater Arroyo virus strain AV 9310135 segment L, complete sequence. XX KW . XX OS Mammarenavirus whitewaterense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7132 RX DOI; 10.1016/j.virol.2007.05.031. RX PUBMED; 17624390. RA Cajimat M.N., Milazzo M.L., Hess B.D., Rood M.P., Fulhorst C.F.; RT "Principal host relationships and evolutionary history of the North RT American arenaviruses"; RL Virology 367(2):235-243(2007). XX RN [2] RP 1-7132 RA Cajimat M.N.B., Fulhorst C.F.; RT ; RL Submitted (08-FEB-2005) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; 67a28fb81e7401110bc50e4dbce56aaf. DR EuropePMC; PMC2277458; 18421377. DR EuropePMC; PMC2323605; 17624390. DR EuropePMC; PMC2680969; 19478873. XX FH Key Location/Qualifiers FH FT source 1..7132 FT /organism="Mammarenavirus whitewaterense" FT /segment="L" FT /host="Neotoma albigula" FT /strain="AV 9310135" FT /mol_type="genomic RNA" FT /country="USA:New Mexico" FT /db_xref="taxon:3052331" FT misc_feature 1..77 FT /note="5' non-coding region" FT primer_bind 1..19 FT CDS 78..365 FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:A9JR24" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:A9JR24" FT /protein_id="AAX99351.1" FT /translation="MGLRYSKEVRDRYGDKEPEGRIPITLNMPQTLYGRYNCKSCWFAN FT KGLLKCSNHYLCLKCLTLMLGRSDYCGICGEVLPKKLVFENSPSAPPYEA" FT misc_feature 366..442 FT /note="intergenic region; IR" FT CDS complement(443..7102) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:A9JR25" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:A9JR25" FT /protein_id="AAX99352.1" FT /translation="MIDCSDRINELKDLVRRWVPDEEAYTEQKTIVLSQVNPSSVITEG FT LKLLSMLIEIDSCLKHGCVFNKNKTVNQILKDHKIVGPTLPDVVPDGFKVSGSTIILLE FT TFVRVNQESFEQKYKYDFEKLMQLSKDLNKCGLILVPVIDGRSNYYVDRFPDWVIERIR FT WLLLKLMDSVKDSGESIEELEYNRLISSLSNMENQNLGLESLKALREEGLDYKAKLMGV FT IKDGTMSKMTASECRIGIAKIYDQFCLLRDSGQYQDVYCETSRADMIKWLKTHKLISPI FT SNGEGGPLNSERCGFCQNHMLRVIAELVQSKRASCTQLPAESKETLRHKKLLSDCNKVK FT GLKVLNTRRHAILCLDVIVLNSLIEVIKSGVDSSHFLINNHYKSVNDRLLSVDLIINKL FT ERKLLKQPDWLKIVGRKLNKSVKEQSLDYVTVWLKELDYEFWYEFKFEREHSGKCEKPT FT LRYKKQNQDTCYQVKFGTDKVLNEGMFVDYLDALSSLSLSMMNSMKTSSAPKLIINDEK FT NFYGTIQCEECYYQDLDNLYNSILLYQKTGEKSRCYGLMLKDEEMTNAYKTGPSFYADP FT KRFFLPIMSSTVILKTCLEMLSWLDWLSTAEINDVKTKLFTLVVNILITPSKRVQIYLQ FT GFRYFIMAFVNEFHFKKLDQKLSVQALTSAEQHVFVLMDELVVYLLEEALEENMAKIFK FT FVLNLSYLCHFITKETPDRLTDQIKCFEKFLEPKIQFGSSFVNLDSSPNLCKEDEEKFI FT MNLNKLFSKDLGVDDMENPGICKTILSLCVSCFNCGILPINKVLDRDPQSPSFSSTALD FT ISSNKSVVVPKLDEAGEVITHYDYQSLLSSVVVEMAQSFKDKLRFKLDRKSIQFAIYKR FT LTNMVLKRRSHPKDHDDECAEEFEELLDEGTYKLINDIESNVLECLNGMVTSPMKKDVK FT EQGAVRRYEGSDLLSTLWPRELMGPILAETSLHEVKDFDPSIFSDGTYQDLCHSVFNSK FT FKKHFFLDDVLRFCPLESLVKNLATKNYIEKDYFECFKYILISAGFDNRVGRYDHRSRS FT RLGFKDAAYHVKEASRISLRESNSEAISKRLDKSFFTNSSLRNLCFYSEESPTFQSTVS FT SSTGKLKFGLSYKEQVGSNRELYVGDLNTKLTSRLIEDYFESITSESKFSCLNNELEFE FT KAILDMKSVVRLSGLAVSMDHSKWGPYMSPAIFNALFSNLDLQLKDGTSIDKGPIENLL FT NWHLHKLVEVPYNVIEAYLKGYTKRGLGLMDRMSNTICENFIFNWFARGVVPSHISSVL FT DMGQGILHNTSDYYGLVTEQFIMLCLEQCFDVKMSAYTSSDDEIILSNSFSLRNSDNES FT LNNLKCKELLEFHYYLSSKLNKFVSPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAAAL FT HNVKAKSPHQLAETIDTILDQCVANGVSIEIVKEISKRTNRLIKYSGHPIDPFLCVVDT FT DLKDWVDGSRGYRLQRSIESAIGDDTQLSIIRNSCKKLFFKIRSGNIQEEYLISALQSS FT PDECLRQMLSITEVNEQEIEDLVETRWLNLRTFGDLRLVLRTKIMSGTRILDREEIPSL FT IKSVQSKLSKNFVRGAKKIVTDAINKSAFQSSICSGFIGLCKSMGSKCVRDGTGGFVYI FT KMLLREIKDHQACGICKPKLSVFCKSALDRLPKYSRSLLWDYYSLVFTNACELGNWVFS FT EAMLPKRVPTMVNPNFFWCVKPGSHTELEDKVNMNHVLYSIKRNFPDLFDEHIAPFLSD FT LASLKISWVQRIKFLDLCVAMDMSSECLGVISHIMRRKREESYIVKQNELSHAHVRDSN FT PLEGGFQLNSLEICRNFLYQIIFESMLHPVLLTTSQFKKYFWYGEVELLPNDADHDLGQ FT LTQFIMDCKTLNISRCMSLDDLDVGYVHSKITLSDIFINLSSFMHLLDWGSLNDYESFD FT DIILKTGQKQTPIEIGIVLSHIRRSFKFKYDRKTNYHIECRLIIDKDEMMMNRWDEDNI FT LEIEVSEVQCFVSGSEGHHISLDGVGLIPLHPLFSGKELIDFNKLLVDQSVEFRQTSTV FT FQRVRLDFRQHTKDLRNKFSYKFQGPEQGLSPLHLYKGQIMERNTIVSRLDVPISSKSV FT FLALEALDPAEHTTFLTSLHTYMKTRMSKSNPCFIRMTQEDLCLLIESYEAAFIGVLKL FT ESDWIEFGDFALCFSNSLNCIMIADDGGQFKLKGRKCRSASTCPRPLEIE" FT misc_feature 7103..7132 FT /note="3' non-coding region" FT primer_bind complement(7114..7132) XX SQ Sequence 7132 BP; 2129 A; 1510 C; 1216 G; 2277 T; 0 other; cgcaccgagg atcctaggct attctggaga ttgcgcaatt gaactctttt gacccagtgt 60 cagaacagat tgcaataatg gggcttaggt attcaaagga agtcagggat cggtatggtg 120 acaaagagcc agagggaaga attcctatta cattgaacat gcctcagact ctttatggta 180 gatacaattg caaatcttgc tggtttgcaa acaagggcct ccttaagtgt agtaatcatt 240 atctatgttt aaaatgtctc acattgatgc ttgggagatc tgattactgt gggatttgtg 300 gcgaggttct gccaaaaaaa ctggtattcg aaaattcgcc atcagccccc ccatacgagg 360 cctaaggcca cggggcccca gggcacaccc ccagctgggg gtgtgccctc ggggcccccc 420 gggcccaggg gcccgggaat gctcactcta tttctagtgg tcttggacat gtggaggcac 480 tcctgcactt tctgcctttt agcttaaatt ggcctccatc atcggcaatc atgatgcagt 540 tgaggctatt gctgaagcat aaagcaaaat caccaaactc aatccagtct gattcaagct 600 tgagaacgcc aatgaaggct gcctcatagg actcaatcag tagacacagg tcctcctgag 660 tcatgcggat gaagcaagga ttgcttttgc tcattctggt tttcatataa gtgtggagtg 720 aggtgagaaa agtggtgtgt tctgctggat ccaaagcctc caatgccaag aacactgatt 780 ttgatgagat tgggacatct agccttgaaa caattgtgtt tctttccata atttgacctt 840 tatataagtg tagtggacta agcccttgtt ctggtccttg aaacttgtaa gagaacttat 900 ttcttaaatc ctttgtgtgc tgtctaaaat caagcctgac tctctgaaaa actgttgatg 960 tctgtctaaa ctcaactgac tgatctacta aaagtttgtt aaaatctatg agttccttcc 1020 cagaaaacaa aggatgcaat ggaatgagtc cgacgccatc caaacttata tgatgtcctt 1080 ctgagccact tacaaagcat tgaacctctg aaacctcaat ctccaaaatg ttatcctcat 1140 cccatctgtt catcatcatt tcatccttgt ctattattag tctgcattca atgtgataat 1200 tagttttcct atcatacttg aacttgaaac ttctcctaat gtgcgagagt actatgccta 1260 tttcaatagg tgtctgcttt tgtcctgttt tgaggatgat gtcatcaaat gactcatagt 1320 catttaaact tccccagtca agtaaatgca tgaaactgct caaatttatg aatatgtcac 1380 tcagtgttat tttactatgt acataaccaa cgtccaaatc atctaaactc atgcatctgg 1440 agatattcag agttttgcag tccataatga attgagtgag ttggcccaaa tcatggtctg 1500 catcattagg gaggagctcc acttcaccat accaaaaata ctttttaaat tgagaagttg 1560 ttaataaaac tgggtgcaac attgattcaa atattatctg atataagaaa tttctacaaa 1620 tctcaagtga atttaattga aatccccctt ccaagggatt tgaatctctg acatgagcat 1680 gtgacaactc attttgtttc actatgtacg actcctctct tttacgcctc ataatgtggg 1740 aaataacccc taaacactca ctagacatgt ccatagcgac acaaaggtct aaaaacttaa 1800 ttctctgaac ccaggatatt tttaaagaag caaggtctga caaaaaaggt gcaatgtgct 1860 catcaaagag atcagggaaa ttcctcttga tagaatagag aacatgattc atgttgacct 1920 tgtcctccag ctcagtgtgg cttccaggtt tgacacacca aaaaaagttg gggtttacca 1980 tagttgggac tctcttaggt aacattgctt ctgaaaaaac ccagttccct aactcacaag 2040 catttgtaaa caccagtgaa taatagtccc acaaaagtga ccttgaatac tttgggagtc 2100 tatccaaagc acttttgcaa aacacactga gtttgggttt acaaattcca caagcttgat 2160 ggtccttgat ttctctcaac agcattttga tataaacaaa accaccagta ccgtctctaa 2220 cacatttgga acccatactt ttacacaacc ctatgaaccc agagcatata ctgctttgaa 2280 aagcagattt attgattgcg tctgtgacaa tctttttagc ccccctcaca aaattctttg 2340 agagttttga ttgcacagat ttgatcagtg atggtatctc ttctctatcc aagatccttg 2400 tgcctgacat aattttagtt cttaagacta gtcttaaatc accaaaggtt cttagattca 2460 accatcttgt ttcaactagg tcctcaatct cttgttcatt cacttcagta atgctcaaca 2520 tctgtctgag gcattcatca ggagaagatt gaagggcact tataagatac tcttcttgta 2580 tatttcctga tcttatttta aaaaagagtt tcttacaaga atttcttata atcgagagtt 2640 gtgtgtcatc accaatggct gactctatgg acctttgaag acggtaacct cttgatccgt 2700 ccacccagtc cttaagatct gtgtcaacaa cacataaaaa agggtcaatt ggatgaccac 2760 tatatttgat cagtctatta gtccttttgg agatctcttt tacaatctca attgagacac 2820 cattagccac acattgatca agaattgtgt ctatagtttc cgctagttga tgaggtgatt 2880 ttgctttcac attatgtagt gcagctgcaa caaatttagt caataagggc acttcttgtg 2940 accaaataaa aaatcttgat ttgaattcac ttgcgaagga tccagcaaca gttttggggc 3000 taacaaactt attcaatttt gaagatagat aataatggaa ctcaagaagt tctttacact 3060 taagattatt taatgattca ttatcagaat tccttaatga aaatgaatta cttaagatta 3120 tttcatcatc acttgacgtg taggcagaca tctttacatc aaagcactgt tctaaacaca 3180 acatgataaa ttgctcagta accaacccat aataatctga tgtgttgtgt aaaattccct 3240 gacccatatc taatacagaa gaaatgtggg aggggaccac acctctggca aaccagttga 3300 aaataaagtt ttcacagatt gtgtttgaca tcctatccat gagtcccaaa cctctctttg 3360 tgtaaccctt gaggtatgcc tcaataacat tgtaaggaac ctcaactaac ttgtgcaaat 3420 gccaattgag gaggttttca ataggaccct tgtcaattga ggtcccatct tttagttgca 3480 aatcaaggtt tgagaacagg gcattgaaaa tagcagggga catataaggg ccccattttg 3540 aatggtccat gctcaccgct agccctgaga gtcgcaccac agacttcata tccaatattg 3600 ccttttcaaa ctcaagctca ttgtttaagc aggaaaattt actctctgat gtgattgatt 3660 caaagtagtc ctcaatcaat ctactagtga gttttgtatt taaatcacca acatatagct 3720 ctctattact tccaacttgt tctttatatg acaatccaaa cttaagtttt cctgtactgg 3780 aagaaaccgt tgattgaaag gttggtgatt cttcagaata aaagcataaa tttctaaggg 3840 atgagtttgt aaagaaactt ttatcaagcc tttttgaaat tgcttcagaa ttgctttctc 3900 tgagacttat tctagaagcc tccttcacat gatatgcagc atctttgaat ccaagcctag 3960 acctactcct gtgatcgtat cttccaactc tgttatcaaa ccctgctgag atcagtatat 4020 atttgaaaca ttcaaaataa tccttttcaa tatagttctt agtggctaag ttcttcacca 4080 gtgattctaa gggacaaaat cttaacacat catccaagaa gaaatgcttt ttaaatttac 4140 tgttaaaaac tgaatgacac aaatcttggt aggtgccgtc tgaaaagatt gaaggatcaa 4200 aatccttgac ttcatgtagt gaggtctcag ctaaaatggg gcccattaac tctctcggcc 4260 acaatgtgct tagcaaatca gaaccctcat accttcgtac tgctccctgt tctttaacat 4320 ccttcttcat tggagaggtg accattccgt ttaagcactc aagaacatta gattctatat 4380 cattgattag tttatatgtg ccctcatcaa gcagttcctc gaattcttca gcacactcat 4440 cgtcatggtc ctttgggtgg gaccttcttt tgagcaccat attagttagt cttttgtaaa 4500 ttgcaaattg aatagatttt ctatccagtt taaatcttaa cttatcttta aaggattgtg 4560 ccatttcaac tactacagat gacaaaaggc tctgataatc ataatgtgtg ataacctcac 4620 ctgcttcatc caatttaggg acaacaacac tcttattgct ggatatatca agagctgtgc 4680 tgctgaatga tggtgattga gggtcacgat ccaaaacttt gttaattggt agtattccac 4740 aattaaagca agaaacacat aatgatagaa tagttttgca tatgcctgga ttctccatat 4800 catcaacacc aaggtctttt gaaaagagtt tgttcaaatt cataataaac ttctcttcat 4860 cttctttaca caagttgggg gatgagtcca gattaacaaa tgaagatcca aattgtatct 4920 tgggctccaa aaatttctca aagcacttaa tctgatctgt caatctatca ggggtctcct 4980 tagtgataaa gtgacacaag taagacagat ttagaacaaa tttaaaaatc ttagccatgt 5040 tctcttctaa agcctcctcc aacagataca caaccagctc atccatcaat acaaaaacat 5100 gttgttctgc agaagtcaat gcctgaacgc ttaacttttg atctaacttc ttgaaatgga 5160 attcattgac aaaagccatg ataaaatatc tgaatccctg taaataaatc tggacccttt 5220 tactaggtgt aatgaggata ttcacaacca gtgtgaagag tttggttttc acatcattta 5280 tttcagcggt tgatagccaa tctaaccatg ataacatctc cagacatgtt ttaagaatca 5340 cagttgaact cattattggt aagaagaacc tcttggggtc tgcataaaag cttgggcctg 5400 ttttatatgc attagtcatt tcttcatctt ttagcatcaa accgtaacac cttgatttct 5460 caccggtctt ctgatataag agtatactgt tgtataaatt atccagatcc tgatagtaac 5520 actcctcaca ttggattgtt ccataaaaat tcttctcatc attaattatt aattttggtg 5580 ctgaacttgt cttcatagag ttcatcatgc ttaaacttag acttgataat gcatcaagat 5640 aatccacaaa cataccttca ttaaggacct tatctgtccc gaatttaacc tgataacatg 5700 tatcttgatt ctgtttttta taccttaatg ttggtttctc acatttacct gagtgctctc 5760 tctcaaattt aaactcatac cagaactcat aatccaattc cttcaaccat acagtgacat 5820 aatctaaact ttgttccttg acacttttat tcaattttct tcccacaatt ttgagccaat 5880 caggttgttt caacaatttc ctttctaatt tattgattat taagtctact gacagtagtc 5940 tgtcattcac acttttatag tgattgttaa taaggaagtg actactatca actcctgatt 6000 tgattacttc aatcagacta ttaaggacaa tcacatcaag acaaagtatt gcatgtctcc 6060 ttgtattaag gactttcagc cccttcactt tattacagtc agagagcagt tttttgtgtc 6120 tcaatgtctc tttgctctca gctggcagtt gggtgcatga tgctctcttg ctttgtacca 6180 gctcggcaat aaccctcagc atatggtttt gacaaaaacc acaacgttca ctattgagtg 6240 ggcctccttc accattgctt ataggtgaaa ttaacttgtg agtttttaac catttgatca 6300 tgtctgccct agatgtttca cagtacacat cctgatattg cccactatcc cttagcaaac 6360 aaaattgatc ataaatctta gcgataccta ttctacactc agaagctgtc attttggaca 6420 ttgtcccatc ctttatcacc cccatcaatt tcgctttgta atccaaacct tcttctctca 6480 gagccttaag tgattcaagc cctaggttct gattctccat gttagagaga ctggaaatta 6540 aacgattata ttccaactct tcaatacttt ctccgctatc cttcacagaa tccattagtt 6600 taagcaacag ccatctaatc ctctctataa cccagtctgg gaaacgatcc acataatagt 6660 ttgacctccc atcaatcaca ggcacaagaa tgagaccaca tttattcaag tctttagata 6720 attgcattaa tttttcaaaa tcatatttgt acttttgttc aaaagattct tgattcacac 6780 gaacaaaagt ttccaagaga attattgtag atcctgacac tttgaatcca tcagggacca 6840 catctgggag tgttggacct acaatcttgt ggtctttcaa gatttgattc actgtcttat 6900 tcttgttgaa aacgcaccca tgcttaaggc atgaatcaat ctcgatcagc attgatagga 6960 gcttcagacc ctcggttata actgaagagg gattgacctg agagaggact attgtttttt 7020 gttctgtgta ggcttcttcg tcgggaaccc accttctaac gagatccttg agctcattta 7080 tacgatcaga gcaatcaatc atgatcaaga aatgcctagg atccactgtg cg 7132 //