ID AY884005; SV 1; linear; genomic RNA; STD; VRL; 6820 BP. XX AC AY884005; XX DT 20-FEB-2005 (Rel. 82, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Citrus sudden death-associated virus, complete genome. XX KW . XX OS Citrus sudden death-associated virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6820 RA Maccheroni W., Silva A.C.R.; RT "Isolated nucleic acid molecules from the genome of Citrus Sudden Death RT Virus and uses thereof"; RL Unpublished. XX RN [2] RP 1-6820 RX DOI; 10.1128/JVI.79.5.3028-3037.2005. RX PUBMED; 15709023. RA Maccheroni W., Alegria M.C., Greggio C.C., Piazza J.P., Kamla R.F., RA Zacharias P.R., Bar-Joseph M., Kitajima E.W., Assumpcao L.C., Camarotte G., RA Cardozo J., Casagrande E.C., Ferrari F., Franco S.F., Giachetto P.F., RA Girasol A., Jordao H.Jr., Silva V.H., Souza L.C., Aguilar-Vildoso C.I., RA Zanca A.S., Arruda P., Kitajima J.P., Reinach F.C., Ferro J.A., RA da Silva A.C.; RT "Identification and genomic characterization of a new virus (Tymoviridae RT family) associated with citrus sudden death disease"; RL J. Virol. 79(5):3028-3037(2005). XX RN [3] RP 1-6820 RA Kitajima J.P., Piazza J.P.; RT ; RL Submitted (11-JAN-2005) to the INSDC. RL Alellyx SA, Rua James Clerk Maxwell, 320, Campinas, Sao Paulo 13067-850, RL Brazil XX DR MD5; e44e22571377551b6d358e5b6bacaddf. DR EuropePMC; PMC5192391; 27999249. DR EuropePMC; PMC5408698; 28441782. DR EuropePMC; PMC548464; 15709023. XX FH Key Location/Qualifiers FH FT source 1..6820 FT /organism="Citrus sudden death-associated virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:312008" FT 5'UTR 1..108 FT gene 109..6675 FT /locus_tag="CSDaVgp1" FT CDS 109..6675 FT /codon_start=1 FT /locus_tag="CSDaVgp1" FT /product="replicase-associated polyprotein" FT /note="putative 240 kDa polyprotein possessing sequence FT motifs similar to methyltransferase, papain-like protease, FT helicase and polymerase motifs present in nonstructural FT proteins of other positive strand RNA viruses" FT /db_xref="GOA:Q5EGG5" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5EGG5" FT /protein_id="AAW88343.1" FT /translation="MDRISARIPVAPASAGPTEYTPYPHTHPLLPRGVFTSGPIQPCLH FT FLPHHAQDAPIRCYRPLTFANHLRYDRSASSLKTPPVKLPLTGGTLADAILSLAPTTHR FT DTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHPVHKTIET FT NLLTNVWPHYATTPSGVMFMKPSKFEKLKIKQPNFSKLYNYRITAKDTTRYPSTSPDLP FT TEDTCFMHDALMYYSPGQICDLFLSRPSLQKLYASLVVPPESDFTTISLFPDLYRYRIE FT KDQLIYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQRGKP FT PIHLEEDSISFRAPKAVLLPEPASLSQSVRDRLVPADVYQALFIYVRAVRTLRVTDPAG FT FVRTQISKPEYSWVTSSAWDNLAHFALATAPHRPHTTYFLFNSTAARVAHWFRTHTLAP FT LSGATAAAASLLMTASWGFRAMISSHLVSLSICKRWLKAPPHLLWPEKAPWFQLTLRPK FT VTGPLIDLPILRPFRLFPSTCAKLGAKHPALATLLPAAPRPTWPLKVGLALAAVPVCLF FT LWRKFIGPDSPQDMHDSYHAMFHPQPWGLTLTRKAICCDRAPFLPIPVVPSSDFKAPPT FT PATPLLTSIPIKGVEPQVSGEGVPPQSASSTGPASDSRRAPQPASSTGPDPPTQNTSAA FT PQPPIESKVTFAQPIESVAPVVPGAGEPPQSASSTGPASVSRRDPQVASSTTPDAPTLD FT VSVTPPKTIYPIDHLQNDFGPCRCSVCEPLQPAPVPSTPLTVSDHKEAQDAEALSSALQ FT ALGLAPTPPAPQSQNLTVESSGAMHASSWDQLSSPSSDWDPSPLARDSSASGPPGMYSD FT LFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATRLPKEALWDTLCATCPDS FT LLDPDTIRRVGLSTDHFAILAHHYSLRCRFHTAHGVIELGMADATSSFDIDHTAGNPGH FT FSLRQSATPRLNGGIAQDLAVAALRFNIDGTLLPIRSVHVYSTWPKRAKNLSSNMKNGF FT DGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLIHIAGFPGCGKSFPISRLLRTPT FT FRNFKVAVPTVELRAEWKTITGLPASEAWRIGTWESSLLKSARVLVIDEIYKMPRGYID FT LAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLSEPQHLSMYLDFYCLWSHRVPQN FT VAAFFHVKTTSKQPGFCRYQRELPNSRILANSQNAGHTLQQCGYAAVTIASSQGSTYEN FT AACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLSNAPSSNRMFSEFFSGRTRPL FT HDWFHNEFPKATVLTEPLKTRGPRLTGAASPYSKAVPIRQASTPALKPDFQGDVIISAP FT IVLGSGELNAPQVSSHFLPETRRPLHWDIPSAIPESATRPDSTEPTTSHPEPVYPGETF FT ENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAVHQEKQDPTLLP FT ASIQKRLRFRPSDKPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLN FT EFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHD FT AVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQ FT SQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDY FT NLAVVNCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGY FT YASHVGCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPF FT QSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRS FT SRNSRSMPDDPDTTLLQGELLQHFQVPFMQSDTLLPLTGGSSAPILTPEAFSTSLAFSM FT ASDAQAGPAPSRDDRVDRQPRLPAAPRVAEVGLNAPSVDYPFQWVVASYDGSEAKNLSD FT DLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVWTIASISPASASETSY FT YGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFSYSVYSNGGTKGTNLC FT TIILRGVVRLSGPSGNLLA" FT mat_peptide 109..4221 FT /locus_tag="CSDaVgp1" FT /product="methyltransferase/protease/helicase" FT mat_peptide 4222..6027 FT /locus_tag="CSDaVgp1" FT /product="RNA-dependent RNA polymerase" FT mat_peptide 6028..6672 FT /locus_tag="CSDaVgp1" FT /product="capsid protein" FT gene 6082..6675 FT /locus_tag="CSDaVgp2" FT CDS 6082..6675 FT /codon_start=1 FT /locus_tag="CSDaVgp2" FT /product="21 kDa capsid protein" FT /note="putative start site; believed to be translated from FT a subgenomic RNA" FT /db_xref="GOA:Q5EGG4" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5EGG4" FT /protein_id="AAW88344.1" FT /translation="MASDAQAGPAPSRDDRVDRQPRLPAAPRVAEVGLNAPSVDYPFQW FT VVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVW FT TIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFS FT YSVYSNGGTKGTNLCTIILRGVVRLSGPSGNLLA" FT gene 6260..6724 FT /locus_tag="CSDaVgp3" FT CDS 6260..6724 FT /codon_start=1 FT /locus_tag="CSDaVgp3" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q5EGG3" FT /protein_id="AAW88345.1" FT /translation="MISLALPLSPKSWPTTDMLSSHLLSWRSALLLQPSPSPSLCRPSG FT PLPPSLQLPPLKPPTMAVDSSLLAVLSSCPAPPISLLISPASILCSRAPSSTQTAPDSP FT TPSTPMAEPRAPISAPSSSGELSASAAPPVIFSLRRASSGEGKHLLVSAR" XX SQ Sequence 6820 BP; 1353 A; 2552 C; 1353 G; 1562 T; 0 other; gtcccctgtg atcgtctctc ccgccctcca gccggaaaga tatttttgct ttaacttttc 60 ttcgcactcc tacgccagat ctacgtgcct taggtcatct aagccgctat ggatcgcatc 120 tctgcccgca ttcccgtcgc gcccgcttcc gccggcccga ccgagtacac tccataccca 180 cacactcacc cactcctacc ccgaggtgtc ttcacctccg ggcctattca accctgtctc 240 cactttcttc ctcaccatgc ccaagatgcc cccatccgct gctacagacc cctcaccttc 300 gccaaccatc tccgctatga ccgttccgcc tcatcgctca agactccgcc cgtcaaactc 360 ccactgaccg gtggtaccct tgccgatgcc atcctttcct tggcacccac cactcaccgc 420 gacaccatcg ccacccccct catggaagcc cttgctgaac cttaccgcca atccttgagc 480 acctacccat ggcacattcc aaccaatctt cagcccttcc tcacctcttg cggaatcacc 540 actgctggcc aaggcttcaa ggcccaccct cacccagtgc acaagaccat cgagaccaat 600 ctcctcacta atgtctggcc ccactacgcc accactccta gtggcgtcat gttcatgaaa 660 ccatcaaagt ttgagaagct caaaatcaaa cagcccaact tctccaagct ctacaactac 720 cgcatcacag ccaaggacac cacccgttac ccctccactt ccccagactt gcccaccgag 780 gacacctgct tcatgcacga tgccctcatg tactattccc ctggacagat ctgtgacctc 840 ttcctctccc gccccagcct ccaaaagctc tatgcttccc ttgttgttcc tccggagagc 900 gacttcacca ccatctccct cttcccagat ctctaccgct accggatcga gaaagatcag 960 ctcatctacg agctcgagca gaaccccgcc cacaactaca tccagcctcg ctctgccatc 1020 gactggctca agaccaccac catccgctgc caggacctca ctctcaccat ctcccgccta 1080 gattcctggg gcccagtcca ctctctcctg atccaaagag gcaagccccc tatccatctt 1140 gaggaggact ccatcagctt ccgtgcccca aaagcagtcc tcctgcctga gccagcttca 1200 ctctcccaat cagtccgcga ccgcctggtc cctgctgatg tttaccaggc tctcttcatc 1260 tatgtccggg ctgtccgcac cctccgtgtg accgacccgg ctggcttcgt tcgcactcag 1320 atctctaagc ccgagtactc ttgggtcact tcctccgcct gggacaatct ggcccacttt 1380 gccttggcca cagctccgca cagaccccac accacctact tcctgttcaa ctcaaccgct 1440 gctcgggtgg cccattggtt ccgcactcat accctggctc cgctctctgg cgccactgct 1500 gccgccgcga gccttctcat gaccgccagc tggggattcc gtgccatgat ctcctctcat 1560 cttgtctccc tctccatctg caagcgctgg ctcaaagctc ctcctcatct cctctggccc 1620 gagaaagctc cctggttcca gctcaccctg aggcccaaag tcactggccc tctgattgac 1680 ctgcccattc tccgaccctt taggctgttc ccttccacat gcgccaaact gggcgccaag 1740 caccctgctc ttgccacatt gcttcctgct gctcccaggc ccacatggcc cctaaaggtt 1800 ggcctcgcac tcgctgctgt cccagtctgc ctgttcttgt ggcggaaatt cattggtccc 1860 gattctccac aggacatgca tgacagctat catgccatgt ttcatccaca gccttggggc 1920 ctcactctca ctcgcaaggc tatctgctgc gatagggccc cctttctgcc catccctgtt 1980 gttcccagct ctgacttcaa ggccccgcca acacctgcca ccccactatt gacttccatc 2040 cctattaagg gtgtggagcc tcaagtttct ggagaaggag tacctccgca gtcggcttca 2100 tcaaccggcc cggcatcgga ctcccgtcgt gccccgcaac cagcttcatc aactggtccg 2160 gatccgccca cccagaacac gagtgctgcc ccccaacctc ccatcgaatc caaagttacc 2220 tttgcccaac ccattgagag tgtggcacct gtagttccag gagcaggaga acctccgcag 2280 tcggcttcat caaccggccc ggcatcggtc tcccgtcgtg acccgcaagt ggcttcatca 2340 accactccgg atgctcccac cctggacgtc agcgtgaccc ctccaaagac tatctatcct 2400 attgaccacc tccagaacga cttcggccct tgccgttgct ccgtctgtga accacttcag 2460 cctgcccccg tcccctccac tcctctcacc gtctcggatc ataaagaagc ccaggacgcc 2520 gaagctcttt cctcggccct ccaagccctc gggctcgctc ccaccccacc agctccacag 2580 tctcagaacc tcactgtaga gtcctcagga gccatgcatg cctcatcttg ggatcagctc 2640 tcctccccat catctgactg ggatccttcc cctctggccc gtgatagctc cgcctctggt 2700 cccccaggca tgtactcaga tctctttcca gctccctacc ttccaggcac cggtcagttc 2760 atcttccgct ccagggccaa tggtcgggcc aacatccctt atcccgacat ggattgcctc 2820 ttgctttcca tcgagcaagc cacccgcctt cccaaggagg ctctctggga caccctctgt 2880 gccacatgcc ccgactctct ccttgatcct gataccattc gccgagtcgg attgtccact 2940 gaccactttg ccatcctggc ccaccactac tccctcaggt gccgctttca caccgcccat 3000 ggtgtcattg agctcggcat ggctgatgcc acctcctcat tcgacatcga ccacactgct 3060 ggcaaccccg gccacttctc cctccggcaa tctgccactc cgaggctaaa tggaggaatt 3120 gctcaagatc tcgctgtggc cgctctcagg ttcaacattg atggcactct cctcccaatc 3180 cgctcagttc atgtctattc cacttggcca aagagagcaa agaacctgtc gtcgaacatg 3240 aagaacggct ttgacggcat catggccaac atccacccca ccaagaccaa tgaatcgaga 3300 gagaagatct tggcactcga ttcgcagctg gacatcgctg tcaggagatc cgtccgtctg 3360 atccatattg ccgggttccc agggtgcggc aagtcctttc ccatctcccg cctcctccgc 3420 actccaacct tcaggaactt taaggtggca gttcccactg ttgagctccg agccgagtgg 3480 aaaaccatta ctggtctccc ggcctcagaa gcctggcgca tcggcacctg ggaatcctct 3540 ctcctcaagt ctgcccgggt cctggtcatt gatgaaatct acaagatgcc aagaggctac 3600 attgatctcg ccatccactc tgatcccacc attgaaatgg tcattgctct cggtgatcca 3660 ctccaaggag agtaccactc cactcatcct tcctctacca actcccgcct tctctctgag 3720 ccccagcatc tctccatgta ccttgacttc tactgcttgt ggtcccaccg cgttccgcag 3780 aacgtggccg ccttcttcca tgtcaagacc acctccaaac agcctggctt ctgccgctac 3840 cagagagagc tgccgaactc cagaatcctg gccaactctc agaatgcagg ccataccctc 3900 cagcagtgtg gctacgctgc cgtcaccatt gcctccagtc agggctccac ctatgaaaat 3960 gcggcctgca ttcacctgga ccgaaacagc tccttgctct cccctgctca ctccatggtt 4020 gctctcactc gctcaaaggt tggtgtcatc ttcaccggcg atcccgccca gctctccaat 4080 gctccaagct ccaaccgaat gttctcagag ttcttctcag gccgcacccg ccctcttcat 4140 gactggttcc acaatgagtt cccaaaggcc actgtcctca ccgagcccct caagactcgg 4200 gggccccgcc tcaccggtgc tgcctcacca tactccaagg ctgtcccaat ccgccaagcc 4260 tccaccccag ctctcaagcc tgatttccaa ggggacgtca taatctcagc acccatagtt 4320 ctcggctccg gcgagctcaa tgcccctcaa gtctcctctc acttcctccc cgagactcgc 4380 cgtcctctcc actgggacat tccatctgcc atccctgaga gtgccaccag accggactcc 4440 actgagccca ccacctccca tccagagcca gtctaccccg gggaaacttt tgagaatctt 4500 gctgcccact ttctccctgc ccacgaccca accgatcgtg agatctactg gcagggtcag 4560 ctgtccaacc agttcccaca catggacaag gaattccatt tggctgcaca acccatgagt 4620 ctcctggctg ccgttcatca agagaagcaa gatcccactc tactgccagc ttcaatccaa 4680 aagagactcc gcttccgccc ctccgacaag ccctaccaga tcaccccaaa agatgaaatc 4740 ctgggccagc tcctctttga aggcctctgc cgagcctacc acagatctcc atttcacact 4800 gaggcctttg atcccgtgct tttcgccgag tgcatcaatc tcaatgagtt cgcccagctc 4860 tcgtccaaga cccaggctac tattatgggc aatgctcgcc gctcagaccc tgattggcgg 4920 tggagcgcag ttcgcatctt ctccaagacc caacacaagg tgaatgaagg gtccattttc 4980 cgctcctgga aggcctgcca aactttggct ctcatgcatg atgctgttgt tctaatcctg 5040 ggccctgtca agaagtacca gcgagtcttt gatcagagag accgaccccg acacctttac 5100 atccatgcag gcaacactcc atcacaaatg agcaactggt gtcaacagca tctcactact 5160 gccgtcaagt tggccaatga ctacactgcc ttcgaccagt ctcagcatgg tgaggcggtc 5220 gtccttgaaa gaaagaaaat ggaaagactc tccatccccc aggctctcat tgatcttcac 5280 atccatctca aaacccatgt ttccacccag tttggccccc tcacatgcat gcgcctgact 5340 ggcgagcctg gcacttatga tgataactct gactacaatc ttgcagttgt caactgtgag 5400 tacatggctg ccaacactcc cactatggtc tcaggcgacg actccctcct ggatcgtgag 5460 cctcccactc gccctgaatg ggtcatcctc cagcctcttc tcagtctccg cttcaagaaa 5520 gaaaggggtc ggtacgccac cttctgtggc tactacgcct cccatgtcgg ctgtgtccgc 5580 tcccccgtgg ctctctttgc caagctggcc atagctgtcg atgacggctc catctctgac 5640 aaaatggcct catacctctc tgaatttgct cttggccact cccttggaga ccatctctgg 5700 gaagctttgc ccctcgaggc cgttcccttc caatctgcct gctttgactt cttctgccgc 5760 cgggccccca gacacctcaa actctctctc atgctcggcg aggtcccaga atccatcatt 5820 gcccgcatcg ggtcatcctt gaagtgggcc tctcatgcca tctacaccac actctcctct 5880 gccgctcgag tggccattct gagatcctcc cgcaacagca gatccatgcc agatgacccc 5940 gacaccactc tgctacaagg tgaattgctt cagcactttc aagtaccatt catgcaatct 6000 gacactctcc tgcctctcac tggtggttcc tctgctccca tcctcacacc agaagccttc 6060 tccacctccc tcgccttctc catggccagc gatgcccaag caggtccggc ccccagtcgc 6120 gatgatcgcg ttgaccgcca gcctcgcctt cctgctgctc ctcgcgttgc tgaagttggt 6180 ctcaatgccc cgtcggtcga ctacccgttc cagtgggtcg tcgcctccta cgacggatca 6240 gaagccaaga acctaagtga tgatctctct ggctctgcca ctctcaccaa agtcatggcc 6300 aactaccgac atgctgagct cacatctgtt gagctggagg tctgccctct tgctgcagcc 6360 ttctccaagc ccatctctgt gtcggccgtc tggaccattg cctccatctc tccagcttcc 6420 gcctctgaaa cctcctacta tggcggtcga ctcttcactg ttggcggtcc tgtcctcatg 6480 tccagcacca cccatctccc tgctgatctc acccgcctca atcctgtgct caagggcccc 6540 gtcaagtaca cagactgccc cagattctcc tactccgtct actccaatgg cggaaccaag 6600 ggcaccaatc tctgcaccat catcctccgg ggagttgtcc gcctcagcgg cccctccggt 6660 aatcttctcg cttaggcgag cctcttcagg tgaaggaaaa cacctcctgg tctcagccag 6720 gtaatgatgc taaacctccc ccgctcaagc agcaatgcct agggttgccg gtcgatccaa 6780 agaccgtttt tctttattat ttaataaaaa aaaaaaaaaa 6820 //