ID   AY879231; SV 1; linear; genomic RNA; STD; VRL; 1551 BP.
XX
AC   AY879231;
XX
DT   11-FEB-2005 (Rel. 82, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus - PAV isolate PH2 ORF2 gene, partial cds; and
DE   coat protein gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus PAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-1551
RX   DOI; 10.1016/j.jviromet.2004.04.005.
RX   PUBMED; 15234811.
RA   Malmstrom C.M., Shu R.;
RT   "Multiplexed RT-PCR for streamlined detection and separation of barley and
RT   cereal yellow dwarf viruses";
RL   J. Virol. Methods 120(1):69-78(2004).
XX
RN   [2]
RP   1-1551
RA   Shu R., Malmstrom C.M.;
RT   ;
RL   Submitted (06-JAN-2005) to the INSDC.
RL   Plant Biology, Michigan State University, 166 Plant Biology, East Lansing,
RL   MI 48824, USA
XX
DR   MD5; 277ba09130c39345bbf80fd5856875d2.
DR   EuropePMC; PMC1413584; 18784788.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1551
FT                   /organism="Barley yellow dwarf virus PAV"
FT                   /isolate="PH2"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:California"
FT                   /db_xref="taxon:2169986"
FT   CDS             <1..810
FT                   /codon_start=1
FT                   /product="ORF2"
FT                   /db_xref="GOA:Q5EIC2"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q5EIC2"
FT                   /inference="non-experimental evidence, no additional
FT                   details recorded"
FT                   /protein_id="AAW80582.1"
FT                   /translation="ALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMGNKLIMCGM
FT                   MHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTERPVYELEQL
FT                   EFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGLVLNAGVPI
FT                   LESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRMSYWESFGV
FT                   DPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT   CDS             924..1526
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q5EIC1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q5EIC1"
FT                   /protein_id="AAW80583.1"
FT                   /translation="MNSVGRRGPRRANQNGXRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT                   KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISKTASKVFRSEAINGKEF
FT                   QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
XX
SQ   Sequence 1551 BP; 486 A; 358 C; 358 G; 343 T; 6 other;
     gcacttgaac atcaaatcac caacaacatc aagatgtttg ttgaagacaa aatgcttagg        60
     ttcaaggtaa gaggccacag aatgtccggt gacattaata ccagcatggg aaacaagctt       120
     ataatgtgcg gcatgatgca cgcatatttc aagaagctgg gtgttgaagc tgaactatgc       180
     aacaacggag acgactgtgt catcatcact gacagagcca atgagaagct cttcgatggc       240
     atgtacgacc atttcctcca gtatggcttc aacatggtga ccgaaagacc agtttacgaa       300
     ctggaacaat tggagttttg ccagtcaaaa ccggtctcta ttaatggaaa gtatagaatg       360
     gtcagaaggc ccgatagcat aggcaaagat agcacaacac tactgagcat gctcaatcaa       420
     tccgacgtca agagctacat gtcggctgtc gctcagtgtg gtttggtgct caacgctgga       480
     gtacccatac ttgaaagttt ctataaatgc ctatatagaa gctcggggta caaaaaagtg       540
     agtgaggaat ttattaaaaa cgtaatatcg tatggaacag atgagagact tcaaggtaga       600
     cgtacctata acgaaacacc tatcacaaac cacagtagaa tgtcctactg ggaatcattc       660
     ggagttgacc ctaagataca gcaaatcgtc gagaggtact acgacggtct tacggtaagt       720
     gcccaactcc agagtgtgaa ggtgacgact ccacatctgc aatcaatact gctttccata       780
     ccggaaaacc actcacaaaa cgaatattaa ttaccaaatc ttagctgggt ttgggatcgg       840
     gtttatagtt agtataccct gtacattagc tctcgcgtac tttatttaca ataaagtttc       900
     agacaccact agagaggtgg tgaatgaatt cagtaggccg tagaggacct agacgcgcaa       960
     aycaaaatgg cmcaagaagg aggcgccgta gaacagttcg gccagtggtt gtggtccaac      1020
     ccaatcgagc aggacccaga cgacgaaatg gtcgacgcaa gggaagagga ggggcaaatc      1080
     ctgtatttag accaacaggc gggactgagg tattcgtatt ctcagttgac aaccttaaag      1140
     ccaactcctc cggggcaatc aaattcggcc ccagtctatc gcaatgccca gcgctttcag      1200
     acggaatact caagtcctac catcgttaca agatcacaag tatccgagtt gagtttaagt      1260
     cacacgcgtc cgccactacg gcmggcgcta tctttattga rctcgacacc gcgtgcaagc      1320
     aatcagccct gggtagctac attaattcct tcaccatcag caagaccgcc tccaaggtct      1380
     tcaggtcaga ggcaattaac gggaaggaat tccaggaatc aacgatagac caattctgga      1440
     tgctctacaa ggccaatgga accaccactg acacggcagg acaattyatc atyacgatga      1500
     gtgtcagttt gatgacggcc aaataggtag actcctcaac accggaacca a               1551
//