ID AY870392; SV 1; linear; genomic RNA; STD; VRL; 3016 BP. XX AC AY870392; XX DT 01-JAN-2006 (Rel. 86, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate T segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3016 RA Naidu R.A., Sherwood J.L., Deom C.M.; RT "Characterization of vector non-transmissible isolate of Tomato spotted RT wilt virus"; RL Unpublished. XX RN [2] RP 1-3016 RA Naidu R.A., Sherwood J.L., Deom C.M.; RT ; RL Submitted (29-DEC-2004) to the INSDC. RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building, RL Athens, GA 30602, USA XX DR MD5; 2852a75eec51ca1165ae398e454f9e5d. XX FH Key Location/Qualifiers FH FT source 1..3016 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /lab_host="Emilia sonchifolia" FT /isolate="T" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:3052585" FT CDS 89..1492 FT /codon_start=1 FT /product="NSs" FT /note="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP49" FT /protein_id="AAX62149.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMSRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLSNNLQEDVIIYTLNNHELTPGKLDLGERTLNYSEDAYKRKYFLSKT FT LECLPTNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKV FT KEAYASGSK" FT CDS complement(2087..2863) FT /codon_start=1 FT /product="N" FT /note="nucleocapsid protein" FT /db_xref="GOA:Q2TI64" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q2TI64" FT /protein_id="AAX62150.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFFLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSVAMEHYSETLNKFYGMFGVKKQAKLTELA" XX SQ Sequence 3016 BP; 946 A; 565 C; 485 G; 1020 T; 0 other; agagcaattg tgtcagaatt ttgttcttaa tcaaacctca cttagaaaat cacaaaactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt caatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa agtaggggat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcaactc cattctattg gatctatcat 480 gagcagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgaaatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcgtttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcgggaga 900 tgagacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaattcgta aatgcaaagc 1020 tcctttcgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttcttagc aacaatttgc aagaagatgt gatcatctac accttgaaca accatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttgaat tacagtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca actaacacac aaactatgtc 1320 ttacttagac agcatccaaa tcccttcttg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg cagtctattt cagttgcaaa atctttgtta aagctcgatt taagcgggat 1440 caaaaagaaa gaatctaagg ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tgtccagcct tttctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tatttgtcat ttctttcaaa ttcctcctgt ctagtagaaa ccataaaaac aaaaataaaa 1620 taaaataaaa tcaaaataaa ataaaatcaa aaaatgaaat aaaaaacaaa aaataaaaca 1680 aaaaaccaaa aaagatcccg aaagggacaa ttttggccaa atttgggttt gtttttgttg 1740 tttttgtttt ttgttttttg tttttatttt attttatttt atttattttt attttatttt 1800 tgttttatct tatgtttttt tgttgttttt gttattttgt tatttattaa gcacaacaca 1860 cagaaagcaa actttatttt atcttattta tttttatttt atttttgttc ttatcttatt 1920 ttttgttgtt ttgttatttt gttatttatt aagcacaaca cacagaaagc aaactttaat 1980 taaacacact tatttaaaat ttaacacact aagcaagcac aagcaataaa gataaagaaa 2040 gctttatata tttgtaggct ttttataatt taacttacag ctgctttcaa gcaagttctg 2100 tgagttttgc ctgtttttta accccaaaca ttccatagaa cttgttaaga gtttcactgt 2160 aatgttccat agcaacactt cctttagcat taggattgct ggagctaagt atagcagcat 2220 actccttccc cttcttcacc tgatcttcat tcatttcaaa tgctttgctt ttcagcacag 2280 tgcaaacttt ccctaaggct tccctggtgt catacttctt tgggtcgatc ccgaggtcct 2340 tatattttgc atcctgatat atagccaaga caacactgat catctcaaag ctatcaactg 2400 aagcaataag aggtaagcta cctcccagca ttatggcaag cctcacagac tttgcatcat 2460 caagaggtaa tccataagct tgaatcaaag ggtgggaagc aatcttagat ttgatagtat 2520 tgagattctc agaattccca gtttcttcaa caagcctgac cctgatcaag ctatcaagcc 2580 ttctgaaggt catgtcagtg gctccgatcc tgtctgaagt tttctttatg gtaattttac 2640 caaaagtaaa atcactttgc ttaataacct tcattatgct ctgacgattc ttcaggaatg 2700 tcagacatga aataatgctc atctttttga tctggtcaag gttttccaga aaaaaagtct 2760 tgaagttgaa tgctaccaga ttctgatctt cctcaaactc aaggtctttg ccttgtgtca 2820 acaaagcaac aatgctttcc ttagtgagct taaccttaga catgatgatc gtagaagttg 2880 ttatatgctt tgaccgtatg taactcaagg tgcaaaagtg caactctgta tcccgcagtc 2940 gtttcttagg gttttaatgt gatgatttgt aagactgagt attaaggttt gaacacaaaa 3000 ttgacacgat tgctct 3016 //