ID AY870391; SV 1; linear; genomic RNA; STD; VRL; 3047 BP. XX AC AY870391; XX DT 01-JAN-2006 (Rel. 86, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate M segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3047 RX AGRICOLA; IND44002381. RX DOI; 10.1111/j.1365-3059.2007.01707.x. RA Naidu R.A., Sherwood J.L., Deom C.M.; RT "Characterization of a vector-non-transmissible isolate of Tomato spotted RT wilt virus"; RL Plant Pathol. 57(1):190-200(2008). XX RN [2] RP 1-3047 RA Naidu R.A., Sherwood J.L., Deom C.M.; RT ; RL Submitted (29-DEC-2004) to the INSDC. RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building, RL Athens, GA 30602, USA XX DR MD5; 60c600191fb7953b15287bfe24fdd622. XX FH Key Location/Qualifiers FH FT source 1..3047 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /lab_host="Emilia sonchifolia" FT /isolate="M" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:3052585" FT CDS 89..1492 FT /codon_start=1 FT /product="NSs" FT /note="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q2TI67" FT /protein_id="AAX62147.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MLAENNIMPNSQAFVKASTDSNFKLSLWLRVPKVLKQISIRKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCKTPFELSMMFSDLKEPYNIIHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPEKLDLGEITLNYKEDAYKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLNLDLSGIKKKESKI FT KEAYASGSK" FT CDS complement(2118..2894) FT /codon_start=1 FT /product="N" FT /note="nucleocapsid protein" FT /db_xref="GOA:Q9YIT0" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q9YIT0" FT /protein_id="AAX62148.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLGNLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSS FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 3047 BP; 923 A; 551 C; 506 G; 1067 T; 0 other; agagcaattg tgtcagaatt ttgttcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatccct gctcatgtta gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttctac tgattctaat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcggaaa ttgttcaagg ttgcagggga 900 tgagacaaat aaaacatttt atttatctat tgcctgcata ccaaaccata acagtgttga 960 gacagctttg aacattactg ttatttgcaa gcatcagctc ccaattcgta aatgtaaaac 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttattcatga 1080 tccttcatat cctcaaagga ttgttcatgc tctgcttgaa actcacacat cttttgcgca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct 1200 aactcctgaa aagttagatt taggtgaaat aaccttgaat tacaaagaag acgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttagac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctattt cagttgcaaa atctttgtta aatcttgatt taagcgggat 1440 taaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tatcctgctt tttctaatta tgttatgttt gtttctttct ttacttataa ttatttctct 1560 gtttgtcatt tccttcaaac tcctcctgtc tagtagaaac cataaaaaca agaataaaaa 1620 taaaataaaa tcaaaataaa ataaaaatca aaaaatgaaa taaaaacaac aaaaaattaa 1680 aaaacaaaaa accaaaaaag atcccgaaag ggacaatttt ggccaaattt gaggtttgtt 1740 tttgtttgtt tgtttgtttg tttgtttgtt tgtttgtttg tttgtttgtt tgtttgtttg 1800 tttgtttgtt tgtttgtttg tttgtttgtt tgttttgttt gttttgtttg tttttttgtt 1860 ttttgttttt gtttttgttt ttatttttat tttttatttt atttttattt ttgttttatt 1920 ttattttatt tttgttttta ttttatgttt ttttgttgtt tttgttattt tgttatttat 1980 taagcacaac acacagaaag caaactttaa ttaaacacac ttatttaaaa tttaacacac 2040 taagcaagca caagcaataa agataaagaa agctttatac atttacaggc tttttataat 2100 ttaacttaca gctgctttca agcaagttct gtgagttttg cctgtttttt aaccccaaac 2160 atttcataga acttgttaag agtttcactg taatgttcca tagcaacact tcctttagca 2220 ttaggattgc tggaactgag tatagcagca tactctttcc ccttcttcac ctgatcttca 2280 gtcatttcaa atgctttgct tttcagcaca gtgcaaactt tccctaaggc ttctctggtg 2340 tcatacttct ttgggtcgat cccgaggtcc ttgtattttg catcctgata tatagccaag 2400 acaacactga tcatctcaaa gctatcaact gaagcaataa gaggtaagct acctcctagc 2460 attatggcaa gcctcacaga ctttgcatca tcaagaggta atccataggc ttgaatcaaa 2520 gggtgggaag caatcttaga tttgatagta ttgagattct cagaattccc agtttcctca 2580 acaagcctga ccctaatcaa gctatcaagc cttctgaagg tcatgtcagt ggctccaatc 2640 ctgtctgaag ttttctttat ggtaatttta ccaaaagtaa aatcactttg cttgataacc 2700 ttcattatgc tctgacgatt cttcaggaat gtcagacatg aaataatgct catctttttg 2760 atctggtcaa ggtttcccag acaaaaagtc ttgaagttga atgctaccag attctgatct 2820 tcctcaaact cgaggtcttt gccttgtgtc aacaaagcga caatgctttc cttagtgagc 2880 ttaaccttag acatgatgat cgtagaagtt gttatatgct ttgaccgtat gtaattcaag 2940 gtgcaaaagt gcaactctgt atgccgcagt cgtttcttag ggttttaatg tgatgatttg 3000 taagactgag tgttaaggtt tgaacacaaa attgacacga ttgctct 3047 //