ID AY870390; SV 1; linear; genomic RNA; STD; VRL; 4763 BP. XX AC AY870390; XX DT 01-JAN-2006 (Rel. 86, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate M segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4763 RX AGRICOLA; IND44002381. RX DOI; 10.1111/j.1365-3059.2007.01707.x. RA Naidu R.A., Sherwood J.L., Deom C.M.; RT "Characterization of a vector-non-transmissible isolate of Tomato spotted RT wilt virus"; RL Plant Pathol. 57(1):190-200(2008). XX RN [2] RP 1-4763 RA Naidu R.A., Sherwood J.L., Deom C.M.; RT ; RL Submitted (29-DEC-2004) to the INSDC. RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building, RL Athens, GA 30602, USA XX DR MD5; a2add6aeafdde017f1d4f91d0da3d7be. XX FH Key Location/Qualifiers FH FT source 1..4763 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /lab_host="Emilia sonchifolia" FT /isolate="M" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:3052585" FT CDS 101..1009 FT /codon_start=1 FT /product="NSm" FT /note="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q2TI69" FT /protein_id="AAX62145.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFI FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTIIDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSIMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSLNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1272..4679) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1-G2" FT /db_xref="GOA:Q2TI68" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q2TI68" FT /protein_id="AAX62146.1" FT /translation="MRNLKLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP FT GVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVITITKLDNKRHFSVGTKFFISESLTQDNCPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLVKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPLKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKEANHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGMIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAAVPSINNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSHNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGLCSRITEEVPYENALFQADIQADLHNDGITIGKLIAHGPDSHI FT YSGNIANLNDPVKVFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISADACSLSTYQLAVKKGSNKYNITMFCSADP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKVEDD FT DDSEINAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4763 BP; 1525 A; 864 C; 846 G; 1528 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat aaatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaagggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tacgatcttt ctgcaagaat 360 gatagtagac acaaaccatc atatctcaaa ctggaaaaat gatcttttta ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctggttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataattgatc ctatatgttt tgtcttttat ctaaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtatcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagcagat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataatccct aaaggaaaca gtgaaaagca 900 gattaaaaaa cagcttaaag aattgagctt aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcattta aatcgaaaac caaacaaaaa 1080 acaagaagaa aaacaaaaaa tcaaacaaaa aacaaaaaca aaataaggct gaaaagccaa 1140 actttggtcc gaagactctt tttgttgttt tttgtttatt tgtatatata ttttcttgtt 1200 tgtttatttt atacatgcat aatctgacta atgtaaaaga ttggatcaaa ttcagcctgt 1260 gacaagcaga ctcagacaag gtgagagaaa tccataggtg gccttcgtct tgtcattgta 1320 tctttcatta acataggggc gttgatttca gaatcatcat catcctctac cttggatcta 1380 gatttataag attcattttt gacataccct ttacaaatgg ttgtcaaaat agaacagaaa 1440 taaatcacaa ggaaaatgaa tgcaataagc aataccactc tgatagtatc aaaaaatgag 1500 ccgaaataac ttgcaatgaa attgaatggg cttttaatat aatcccagaa gccccatgct 1560 gaagaatcag aattatattg ttgttcttca tgagcatact catcattttg atctattatg 1620 ttctctggtt cttctacaac aacattattg accaaaactt ccacagaaat atccggattg 1680 ccttctggat acaacgtcat tttcttctta tccggatcag cagaacaaaa cattgttatg 1740 ttgtatttat tagatccttt tttaacagcc agctgataag tagatagaga gcaagcatct 1800 gcagaaattg cagtagaaaa tgtcaaatct gagaaaaatt ccaaaacgca agataaacct 1860 tgaccgcata gaagacagcc gttgcaattt aagcttgttg aagttatgga aggtctctta 1920 ggagcaactt taaaaagatc tgatggaaga tcaacgacaa tcttgagttt ccctagactg 1980 aaagcttttt ccaagaaaaa actagagaaa tctttgaaac taacaggaat atctgatatt 2040 tgctctaaac cagatctaaa tctgtatgta tcatatccgc atgttttaat agtgattgat 2100 tttttcccta tcgctgcaca atcccaagac atatcatctc cttctagagt tttcttagta 2160 aaaataggca ctccatcatg agtcaattgt gggtgaccaa acactttcac aggatcattc 2220 aagtttgcta tatttccaga ataaatatgg ctatcaggtc catgggctat cagtttacct 2280 atagtgatac catcattgtg caaatctgct tgtatatcag cttgaaacaa ggcattttca 2340 taaggaacct cttcagtaat ccttgagcac agacctccta aaataccaga aatacaaaca 2400 tctgccacta tagttgattt cagcactgaa taaattctgt acgatttatc catgtcatag 2460 atattccgac agaatccgca tgtagcacct tcattaattg caaaacacca agcttcttca 2520 catccccaat aagaagttgg tgttatacaa aaatcttgga aaccagttaa agcttgattt 2580 tttctgcagg tgtcacagtt tcctgtacaa gtggaataaa aatctgtgtg ggtgctttgg 2640 ataggagctg ttgtgtattt ttctgacact tcataatgaa ttcccacact tttgatataa 2700 atcacaaatt tttttgctgt ttctgaagtc ttatcattta acatgaatat agtccctcct 2760 cctcctaaaa gagattgttc tatcatgtat ctatatttcc cgtccacaac agaatcaaag 2820 atcaatgatt gtctaggcag aatgttctct ggtatgcttg tttcgttttt gttcagagaa 2880 tctcctgcaa tcattccaga aattttatct gtacgattat gggaatctat tataccattc 2940 ctcaatctct tagcctcata cagaccaacc gatgttaacc ctaaagagct tcctgtataa 3000 tctgaaaacc cattatacaa aggtttgttc tgaaataaat ctaggtactc gcaacccagt 3060 ctgcatttta taagattatt aatagatggg actgcagcac aattctggtt ctctatgcaa 3120 tcatttggac cttctataac aatgttagtg ccaaaaatac tttctataat cttgtcttct 3180 ttcacattac agtaacattg atctttttct gggcattttt caaatttgct tgtaaccaaa 3240 aatggacagc ctggaacata aaaacatcca cttaaacatt gggtagtttg agccatagac 3300 atgggcattt gagacaaaat gatcatacct attaagattt cagttacaaa tttcagcaaa 3360 ctaaagctca gcttagtgtt cactattaga tggaaccact ccatgctagt ccacttgtgt 3420 ttgttgtagt catgatttgc ttctttggac aatatggggc actctgaaga atgttctttt 3480 gaagctttgc ttttgttgca gatgcaaatt ttagtacatt catgtgtgat tatgcacaaa 3540 ttgccacagt tagaacattt aagtggaaaa tatttccata agcagtttat gagcaacaaa 3600 atagggtatg tgatcaagcc tatgagatca taccagagaa agaggggttt ggttgtcttg 3660 tttactaacc accggatagg gaaatagatc aacaaagcta tcaatattaa tcttatccaa 3720 gaaaaattga tacaggctgt ttgtttataa atgctttttg aatatttgat tatgcaatct 3780 ctaactcttt tgtttgtttt tggtatttta gctgatttgt caccgcacag gagattgtgc 3840 tcaccatcta acatttcttc agtaaaagtg atgcttgctg atccagaaaa ggatatgacc 3900 ttgtgctcca cattttcacc aggctttttt actaaataac ccatgatctt ctcggggcta 3960 gtgatgctaa cagtataggg attggcaaag ttcgatttgg ttattttgca gtcaccagat 4020 aactttacag tttgtaatga tactgttcca ttagtagggt acgagttata ggttatagga 4080 caattatctt gtgtcaggct ttctgaaatg aagaattttg ttccaactga aaaatgcctt 4140 ttgttgtcaa gtttggtaat ggttataacc gggactttgg agaatctctt tggcagattt 4200 aaagaattgt cacatttttc taaaccttct gctgaatcag aaacacagga atatatgaca 4260 ccattatttt ccacttgata ataaacatta taagtggata tcccttttat ctcacatttt 4320 aatgaagaag cattcaagca gttgttagga agatccaaga cagagattgt tttttgcgta 4380 gttgactcag caaaaatagg gatggttgat tcttcttccc gtatttgacg ggttccagga 4440 gtctgagatt ctagcatcag attagtcaaa gtctccaaga tagccttgcg ttgaatcgat 4500 gcagcagtgg gtacttcatt ctcagcagaa tcatcataaa ccccaggatg gtctccacga 4560 attatttcta ctttggcatc tgtggctctg aaggtcaaga atgccaacaa gacagaactc 4620 agggcaattg tgaaaagact cacttttacc actagttcta gtagttttaa atttctcatc 4680 ttagacgtct gcccagatta taatggttat atgattaatt tcaagatgtc tggattaagg 4740 tttttgtttg cactgattgc tct 4763 //