ID AY870389; SV 1; linear; genomic RNA; STD; VRL; 4774 BP. XX AC AY870389; XX DT 01-JAN-2006 (Rel. 86, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate T segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4774 RX AGRICOLA; IND44002381. RX DOI; 10.1111/j.1365-3059.2007.01707.x. RA Naidu R.A., Sherwood J.L., Deom C.M.; RT "Characterization of a vector-non-transmissible isolate of Tomato spotted RT wilt virus"; RL Plant Pathol. 57(1):190-200(2008). XX RN [2] RP 1-4774 RA Naidu R.A., Sherwood J.L., Deom C.M.; RT ; RL Submitted (29-DEC-2004) to the INSDC. RL Plant Pathology, University of Georgia, 3409 Miller Plant Science Building, RL Athens, GA 30602, USA XX DR MD5; ddc07df6f40c9858bdfed0856685c29e. DR EuropePMC; PMC6611158; 31316531. XX FH Key Location/Qualifiers FH FT source 1..4774 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /lab_host="Emilia sonchifolia" FT /isolate="T" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:3052585" FT CDS 101..1009 FT /codon_start=1 FT /product="NSm" FT /note="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q2TI71" FT /protein_id="AAX62143.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGHDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKPVVALVDPNMPSEKQV FT ILKGQGTIIDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSIMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSLNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1283..4690) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1-G2" FT /db_xref="GOA:Q2TI70" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q2TI70" FT /protein_id="AAX62144.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPISAESTTQKT FT ISVLDLPNNCLNASSLKCEIKGISTFNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLVKKPGENAEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDHIGLITYPILLLINCLWKYFPLKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGMIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAADPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CNTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGLCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGAPIFTKKTLEGDDMSRDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISVDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYLCSILTTICKGYVKNGSYKSRPKVEDD FT DDSEINAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4774 BP; 1518 A; 857 C; 858 G; 1541 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caaggggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgccttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt cacgaccttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acctgtggtt gccctggttg atcccaacat gccgtctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataattgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtatcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataatccct aaaggaaaca gtgaaaagca 900 gattaaaaaa cagcttaaag aattgagctt aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcattta aatcaaaaac caaaacaaaa 1080 aacaagaaga aaaaacaaaa aatcaaaaac aaaaaacaaa aacaaaataa ggctgaaaag 1140 ccaaactttg gtccgaagac tctttttgtt gttttttgtt tatttgtata tatatttttt 1200 tgtttgtttt ttatttattt tatacatgca taatctgact aatgtagaag attgaatcaa 1260 attcagcctg taacaagcag actcagacaa ggtgagagaa atccataggt ggccttcgtc 1320 ttgtcattgt atctttcatt aacatagggg cgttgatttc agaatcatca tcatcctcta 1380 ccttgggtct agatttataa gatccatttt tgacatatcc tttacaaatg gttgttagaa 1440 tagaacataa ataaatcaca aggaaaatga atgcaataag cagtatcact ctgatagtat 1500 caaaaaatga gccgaaataa cttgcaatga aattaaatgg gcttttaata taatcccaga 1560 agccccatgc tgaagaatca gaattatatt gttgttcttc atgagcatac tcatcatttt 1620 gatctattat gttctctggt tcttctacaa caacattatt gaccagaact tccacagaaa 1680 tgtccggatt gccttctgga tacaatgtca ttttcttctt gtccggatta gcagaacaaa 1740 acattgttat gttgtattta ttagatcctt ttttaacagc cagttgataa gtagatagag 1800 agcaagcatc tacagaaatt gcagtagaaa atgtcaaatc tgagaaaaat tccaaaacgc 1860 aagataaacc ttgaccgcat agaagacagc cgttgcaatt taagcttgtt gaagttatag 1920 aaggtctctt aggagcaact ttaaaaagat ctgatggaag atcaacgaca atcttgagtt 1980 tccctagact gaaagctttt tccaagaaaa aactagagaa atctttgaaa ctaacaggaa 2040 tatctgatat ttgctctaaa ccagatctaa atctgtatgt atcatatccg catgttttaa 2100 tagtgattga ttttttccct atcgctgcac aatcccgaga catatcatct ccttctagag 2160 ttttcttagt aaaaataggc gctccatcat gagtcaattg tgggtgacca aacattttca 2220 caggatcatt caagtttgca atattaccag aataaatatg gctgtcaggt ccatgggcta 2280 tcagttcgcc tatagtgata ccatcattgt gcaaatctgc ttgtatatca gcttgaaaca 2340 aggcattttc ataaggaacc tcttcagtaa tccttgagca cagacctcct aaaataccag 2400 aaatacaaac atctgccact atagttgatt ttagtactga ataaattctg tatgatttat 2460 ccatgtcata gatattccga cagaatccgc atgtagcacc ttcattgatt gcaaaacacc 2520 aagcttcttc acatccccaa taagaagttg gtgttataca aaaatcttgg aaaccagtta 2580 aagcttgatt ttttctgcag gtgttacagt ttcctgtaca agtggaataa aaatctgtgt 2640 gggtgctttg gataggagct gttgtgtatt tttctgacac ttcataatga attcccacac 2700 ttttgatata aatcacaaat ttttttgctg tttctgaggt tttatcattt aacatgaata 2760 tagtccctcc tcctcctaaa agagattgtt ctatcatgta tctatatttc ccgtccacaa 2820 cagaatcaaa gatcaatgat tgtctaggca gaatgttctc tggtatgctt gtttcgtttt 2880 tgttcagaga atctcctgca atcattccag aaattttgtc tgtacgatta taagaatcta 2940 ttataccatt cctcaatctc ttagcctcat acagaccaac cgatgttaac cctaaagagc 3000 ttcctgtata atctgaaaac ccattataca aaggtttgtt ccgaaataaa tctaggtact 3060 cgcaacccag tctgcatttt ataagattat caatagacgg gtctgcagca caattctggt 3120 tctctatgca atcatttgga ccttctataa caatgttagt gccaaagata ctttctataa 3180 tcttatcttc tttcacatta cagtaacatt gatctttttc tgggcatttt tcaaatttgc 3240 tagtaaccaa aaatggacag cctggaacat aaaagcatcc actcaaacat tgggttgttt 3300 gagccataga catgggcatt tgagacaaaa tgatcatacc tattaagatt tcagttacaa 3360 atttcagcaa actaaagctc agcttagtgt tcactattag gtggaaccac tccatgctag 3420 tccacttgtg tttgttgtag tcatgatctg cttctttgga caatatggga cactctgaag 3480 aatgttcttt tgaagctttg cttttgttgc agatgcaaat tttagtacat tcatgtgtga 3540 ttatgcacaa attgccacag ttagaacatt taagtggaaa atatttccat aagcagttta 3600 tgagcaacaa aatagggtat gtgatcaagc ctatgtgatc ataccagaga aagagaggtt 3660 tggttgtctt gtttactaac caccggatag ggaaatagat caacaaagct attaatatta 3720 atcttatcca agaaaaattg atgcaggctg tttgtttata aatgcttttt gaatatttga 3780 ttatgcaatc tctaactctt ttgtttgttt ttggtatttt agctgatttg tcaccgcaca 3840 agagattgtg ctcaccatcc aacatttctt cagtaaaagt gatgcttgct gatccagaaa 3900 aggatatgac cttgtgttcc gcattttcac caggcttttt tactaaataa cccatgatct 3960 tttcggggct agtgatgctt acagtatagg gattggcaaa gttcgattta gttattttgc 4020 agtcaccaga taactttaca gtttgtaatg atactgttcc attagtaggg tacgagttat 4080 aggttatagg ataattatct tgtgtcaggc tttctgaaat gaagaatttt gttccaactg 4140 aaaaatgtct tttgttgtca agtttggtaa tgggaataac cgggactttg gagaatctct 4200 ttggcagatt taaagaattg tcacattttt ctaaaccttc cgctgaatca gaaacacagg 4260 aatatatgac accattattt tccacttgat aataaacatt aaaagtggat atccctttta 4320 tctcacattt taatgaagaa gcattcaagc agttgttagg aagatccaag acagagattg 4380 ttttttgcgt agttgactca gcagaaatag ggatggttga ttcttcttct cgtatttgac 4440 gggttccagg agtctgagat tctagcatca gattagtcaa agtctccaag atagccttgc 4500 gttgaatcga tgcagcagtg ggtacttcat tctcagcaga atcatcataa acctcaggat 4560 ggtctccacg gattatttct actttggcat ctgtggctct gaaggtcaag aatgccaaca 4620 agacagaact cagggcaatt gtgaaaagac tcacttttac cactagttct agtagtttta 4680 aaattctcat cttagacgtc tgctcagatt ataatggtta tatgattaat ttcaagatgt 4740 ctggattaag gtttttgttt gcactgattg ctct 4774 //