Dbfetch
ID AY864852; SV 1; linear; genomic RNA; STD; VRL; 3534 BP. XX AC AY864852; XX DT 29-JAN-2005 (Rel. 82, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Watermelon silver mottle virus isolate DD6 S RAN segment S, complete DE sequence. XX KW . XX OS Orthotospovirus citrullomaculosi OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3534 RA Chen T.-C., Liu F.-L., Yeh S.-D.; RT "Sequence determination of S RNA of watermelon silver mottle virus, a melon RT isolate from Taiwan"; RL Unpublished. XX RN [2] RP 1-3534 RA Chen T.-C., Liu F.-L., Yeh S.-D.; RT ; RL Submitted (23-DEC-2004) to the INSDC. RL Plant Pathology, National Chung Hsing University, 250 Kuo Kuang Road, RL Taichung 402, Taiwan XX DR MD5; d62d8b5d5b464ad6f1db5d7ef45ea9fe. DR EuropePMC; PMC4439075; 25993336. XX FH Key Location/Qualifiers FH FT source 1..3534 FT /organism="Orthotospovirus citrullomaculosi" FT /segment="S" FT /host="melon" FT /isolate="DD6 S RAN" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:3052571" FT CDS 68..1387 FT /codon_start=1 FT /product="nonstructural protein" FT /note="NSs; gene silencing suppressor" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5G1M6" FT /protein_id="AAW64929.1" FT /translation="MSTAKNAASEFIKSYGTKDNRAVNDCYSVFTGEGVNFLNLFMHNN FT AGIKSAFSINDLGRNEDVKIHEAEVVDSCHDYHYFEKFGLDITFCEHEMNLIVRKPGVK FT NTGCKFTMHNQIFNPNSNILNMTPGTISEDAFYDRSKIASSGLLPSRWCLDECYKSNFY FT IATNGDLTLDYGFSVMGRTTSYWRESMSREKILSVKQKCFSDNTVPTNRLLSTSTVKGI FT QIGSELASDTTVILSCKQNLNIDLKSQYRISFHGIQEEGVFARTFCVPFENKSRMISFY FT AKTVADNSNERTTLIIKVVTKTVDSHLIIPIRNHINCEKKIGARVGLVDFCDSDPNYNQ FT LIVKNLLSVHTQFAINLSEVIQKPVIVFKMYDKELHNDYTEVSGRILNYQVDSEGNIYF FT LSKTLEVLPKSLSILSYLGSIAPIQWKECLEHQHFVVKAE" FT CDS complement(2642..3469) FT /codon_start=1 FT /product="nucleocapsid protein" FT /note="involved in nucleocapsidation" FT /db_xref="GOA:Q88929" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88929" FT /protein_id="AAW64930.1" FT /translation="MSNVKQLTEKKIKELLAGGTADVEIETEDSTPGFSFKAFFDNNKN FT IEITFTNCLNILKCRKQIFAACKSGKYNFCGKNIVATSVDVGPEDWTFKRTEAFIRTKI FT VSMVEKSKNEAARQEMYGKIMELPLVAAYGLNVPASYDSCALRMMLCIGGPLPLLSSIR FT GLAPIIFPLAYYQNIKKEKLGIKNFSTYEQVCKVAKVLSASQVEFKDDLDVMFKQAVKI FT LSESNPGTASSISLKKYEDQVKYMDRVFSANLSVDDYGDHSKKSSKPSTSLEV" XX SQ Sequence 3534 BP; 1198 A; 585 C; 569 G; 1182 T; 0 other; agagcaatcg aggcaaataa taattctaga acaaacaacg tcatactcaa gtaatactat 60 ttcaggcatg tctactgcaa agaatgctgc ttcagaattc atcaaaagtt atggcacaaa 120 agacaacaga gcagttaatg attgctactc tgtattcact ggagaaggtg tcaactttct 180 caatttgttc atgcataata atgcaggtat taaatctgca ttcagcatca acgatttggg 240 caggaatgaa gatgtcaaaa tccatgaggc tgaagttgtt gattcatgcc atgattatca 300 ttattttgaa aaatttggac tagacataac attctgcgag catgaaatga acttaattgt 360 aaggaaacca ggtgtgaaga acacaggctg caagttcaca atgcacaatc aaatctttaa 420 tccaaattcc aatatactga acatgacgcc cggaacaatt tcagaagatg ctttctatga 480 cagaagcaaa atagcatcta gtggactact tccttcgaga tggtgtttgg atgagtgcta 540 taagagtaat ttctatatag ctaccaatgg agatcttacc cttgattatg ggttttctgt 600 aatgggaaga acaacatctt actggagaga gagcatgtca agggaaaaga tcttgtcagt 660 taagcaaaaa tgcttttctg acaacactgt ccctaccaac agattgctat ctacatcaac 720 agtcaaaggc atccaaattg gttctgaact agcttctgat accacagtta tattatcatg 780 caagcaaaat ttaaacattg atttgaaatc ccaatatcgc atttcatttc atggtattca 840 ggaagaaggg gttttcgcaa ggactttctg cgtccctttt gaaaataaat ctagaatgat 900 cagtttttac gcaaaaactg ttgctgacaa cagtaatgag agaaccaccc ttatcataaa 960 ggtggttaca aagactgttg attctcatct tatcattcct ataagaaatc atatcaattg 1020 tgaaaagaaa atcggagcaa gagtaggtct tgttgatttc tgtgatagtg atcccaatta 1080 caatcaattg attgtcaaga atctgttaag tgtccatact cagtttgcta tcaatttatc 1140 tgaagttatt caaaagccag tcatagtgtt caaaatgtat gataaagagc tccacaatga 1200 ttatacagaa gtttccggga gaatcctgaa ttaccaggta gattcagaag ggaatattta 1260 tttcctctca aagactcttg aggttctgcc taaatcacta tcgatcctga gttatttagg 1320 cagcattgca ccaattcaat ggaaagagtg tctggaacat cagcactttg ttgtgaaagc 1380 agaataaact tatttgaaaa tcttatgcta tattaatatc tataaatagt atatcgcatg 1440 ttgtatgtct gcatttgtgc atttcaatta ataaattaat tttagttata aatccaagta 1500 tttgtattct taagtatttt atttaagttt aagttagtaa agtaagttta tttactagaa 1560 ttgaataaat aaatagataa taaatatata agtaaatgaa gctaaaaacc aaaatcataa 1620 aattaagtaa ataaaattag tcatgaatct aaatgtttgt gtgtctgagt gtttaattta 1680 agttcaagtt tagtagtatg agtctgtttg tgttgattaa gtaaataaac atataaataa 1740 gtgaaattat caaatcaaaa gtttacaaaa ttaaataaaa actcataaac aaaaaaccca 1800 taaaaatgaa ataacaaaaa aaccaaaaag acctcgaaag gggcaaattt ggcttcatca 1860 ccctgagcaa tttctaattc acatgtaaga ataatgggat tatttggatc atgtgtattt 1920 gtttatgatc gtgatgaaca agagtttgct tgaaattaat tatagttgga atcttttagg 1980 tcatttgcgt aagttgcaat gaaggagcat tattgttagt tagtttactc ttatcacatg 2040 attaataaaa ttctaacatg ctatgaccag ttgatcatga tattagaatt catgtaaatt 2100 atatattctg attgattcga gcagctttgg atctgtcatc taattctaag attcttcatc 2160 agtattgatc cttttatcta actattcatg tgttcaacca aatcaatcta aatcatttaa 2220 aaacttctaa tctaaacaaa ttgtaaagct aagtttgatc ttgcgattga tcattacagt 2280 taaatagaat catatttaca gaaaattggc cattggtttg cctccgaaga ggtctttttt 2340 tgtttttatt tttttgattt tttgggtttt ttggaatttt ttatatatat atatatattg 2400 tttatttatt tgttttattt attttattgt ttttatttat tttatttatt tattttatat 2460 ctatataagc acacacatag gtataactct ataatagcta ctcgtataat taaaataagt 2520 atatagttat ataagcacac acaaaaaact caaacaaaca taaatagatt tattaaatta 2580 tatagttaag cataaacaca aacacacatg tgcacatata tgcacggttg acacttcaaa 2640 gtcacacttc caaagaagtg ctaggctttg aacttttctt tgaatgatca ccatagtcat 2700 ccacagaaag gttagcactg aagaccctgt ccatgtactt aacctgatcc tcatatttct 2760 tgagcgaaat agagctagct gttccagggt tactctcact gagtattttg acagcctgtt 2820 tgaacataac atccaaatca tccttaaatt caacctgtga agcagaaaga accttagcca 2880 ccttacaaac ttgctcatag gtggagaagt tctttatacc taacttttct ttctttatat 2940 tttggtaata agctaaaggg aaaataatcg gtgctagtcc ccttatacta gataaaagag 3000 gtagaggtcc tccaatacat aacatcatcc tcaaggcaca agaatcataa gatgcaggca 3060 cattcaaccc ataagcagca actaatggta gttccatgat tttcccatac atttcctgtc 3120 tagcagcttc attcttactt ttctccacca tactaactat ttttgtcctg ataaaagctt 3180 ctgtcctctt gaatgtccag tcctcaggtc cgacgtcaac acttgtagca acaatatttt 3240 taccgcaaaa attatactta ccgctcttgc aggctgcaaa aatctgtttc ctgcatttca 3300 agatattcaa gcagtttgta aaagttatct ctatattttt gttgttgtca aaaaaagctt 3360 tgaagctaaa tccgggagtg gagtcctctg tttcaatttc aacatctgct gtaccaccag 3420 ccaaaagttc cttgattttc ttttctgtga gctgcttgac gttagacatg gtgtttacaa 3480 aggaaacgtc tgatatgttg tttgaactga tattattagc gcctcgattg ctct 3534 //