ID AY864851; SV 2; linear; genomic RNA; STD; VRL; 6546 BP. XX AC AY864851; XX DT 02-FEB-2005 (Rel. 82, Created) DT 13-AUG-2006 (Rel. 88, Last updated, Version 3) XX DE Impatiens flower break potyvirus polyprotein gene, partial cds. XX KW . XX OS Impatiens flower break virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-6546 RA Guaragna M.A., Jordan R.; RT "Detection and Characterization of a New Potyvirus Infecting New Guinea RT Impatiens"; RL Unpublished. XX RN [2] RP 1-6546 RA Jordan R., Guaragna M.A.; RT ; RL Submitted (23-DEC-2004) to the INSDC. RL Floral & Nursery Plants Research Unit, US National Arboretum, USDA-ARS, RL 10300 Baltimore Ave, Beltsville, MD 20705, USA XX RN [3] RC Sequence update by submitter RP 1-6546 RA Jordan R., Guaragna M.A.; RT ; RL Submitted (11-AUG-2006) to the INSDC. RL Floral & Nursery Plants Research Unit, US National Arboretum, USDA-ARS, RL 10300 Baltimore Ave, Beltsville, MD 20705, USA XX DR MD5; 7298d73551c3bf71e5410b620411de30. XX CC On Aug 11, 2006 this sequence version replaced gi:58294201. XX FH Key Location/Qualifiers FH FT source 1..6546 FT /organism="Impatiens flower break virus" FT /host="New Guinea Impatiens" FT /mol_type="genomic RNA" FT /country="USA" FT /note="causes flower break symptoms in several New Guinea FT Impatiens cultivars" FT /db_xref="taxon:2170135" FT CDS <1..6291 FT /codon_start=1 FT /product="polyprotein" FT /note="IFBV ORF 1; processed to RdRp and CP at VYLQ/SDTS FT cleavage site" FT /db_xref="GOA:Q5G1M7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:Q5G1M7" FT /protein_id="AAW70041.2" FT /translation="SRIALLNKIRETWIYCGRKIFSFIFSAVNRCYGDILYFVNVMLVF FT SLMVQMTSVMHGIINEARKNKALMHQMTIDQNEKAVVHIYDMCHKMEGNSLTRENFLNH FT IRSVRPDLEDTAQYMVCGKLSVATQAKTGTQVQFEKIIAFMALITMIIDTERSDAIFKV FT LNKLKSVFQTMGDNVQTQSLDEIISIDEDKKLTIDFEIDTSKESPSMSFDVNFESWWTV FT IAQIGHSTLQKYRAISRITRETSAHVANQISVASETEFLIRGAVGSGKSTGLPHHLSKK FT GKVLLLEPTRPLAENVSKQLAKEPFYQQVTLRMRGLSKFGSSNITVMTGGFAFHYYVNN FT PHQLRDFDYIIIDECHVLDSSLIAFNCVLKEFEFPGKLLKVSATPPGRECEFTTQHAVK FT LKVEDQLSFQQFVQAQGSGSNADMVQHGSNLLVYVASYNEVDTLSRLLVEKHFKVTKVD FT GRTMQMGGVEIITAGTESKPHFIVATNIIENGVTLDVDCVIDFGLKVVATLDSDNKCVR FT YNKKSVAYGERIQRLGRVGRYKPGFALRIGHTEKGIEEIPEFIATEAAFLSFAYGLPVT FT TQSVSTNILGRCTVKQARSALNFELTPFFVTHFVKFDGTMHPEIHKILKCFKLRESEML FT LNKTAIPYQYTSQWITRREMERIGVHIDCDDNVKIPFYVNGIPDKVFESLWDTVCKYRS FT DAGFGRLTSVNASKVCYTLSTDPTAVPRTIAIIDHLLSEEMMKKNHFDTLSSAITGHSF FT SLNGIAESIRKRYLRDHTASNIATLQQAKSQLQEFNVKHINFSNLGALEDLGILNAVQL FT QSKEEIGKFLGLKGKWDGKKFLNDIFLVGLALIGGGWMMWEYFTKKMNECVTTQGKKRM FT LQKLKFRDAFDRKVGREIFADDYTMEHTFGDAYTAKGKAKGSHHTKGMGRKTRNFTHMY FT GVEPENYSMIRFIDPLTGAVLDEDIHADIRLVQEEFGEIRKEKILEGDLDPQTIVSKPG FT IQAYFIGKGTEEALKVDLLPHRPTLMCKNMNAISGFPEREDELRQTGIPQKISRDKVPE FT PEAAVVVESKSVYKGVRDYNNIATLVCQLTNQSDGHSESIYGIGYGPYILTNGHLFRRN FT NGSLTVRTWHGEFEVKNTTQLKIHFIKGKDAIIIRMPKDFPPFARRNFFRGPVREERVC FT MIGTNFQEKSLRATVSESSLTTPEGSGSFWVHWITTQDGYCGMPLVSVNDGYIVGFHGL FT TSRDSSKNFFVPLENDFKEKYFDSAESLNWDKHWFWQPDKIAWGSLNLIENQPKDEFKI FT SKLITDLFKDTVAMQSKRDRWVYESATGNLKACGQAESALVTKHTIKGKCPQFAQYLAS FT NDEAMRFFKPLMGAYQPSKLNKAAFCKDFFKYNKPVVLNEVDFTSFEAAVSGVVAMMTS FT FGFSECMYVTDPDEILNSLNLKSAIGAQYKGKKQDYLSGCDEFDKERLLLLSSERLFCG FT MKGLWNGSLKAELRPLEKVVANKTRTFTAAPIDTLLGAKVCVDDFNNQFYSLNLKCPWT FT VGMTKFYGGWDQLMRKLPDGWVHCHADGSQFDSSLTPLLLNAVLGIRKTFMEKWWVGEE FT MLENLYAEIVYTPILTPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAVYYACHKEGWSDS FT DIQNRLVFFANGDDIILSIEKENEVILDTFATSFSELGLNYNFNERTTERENLWFMSHK FT AIKIEDLYIPKLEPERIVSILEWDRSKEVMHRTEAICAAMIEAWGYTDLLREIRKFYLW FT LIERDEYRELAAIGKAPYIAETALKKLYTDRDANEVELQKYLRSLTPDSMMSCGESVYL FT QSDTSSEPRNLDAGIEEKKKKEEKSQGGKEATYSKAGASSATKIDKDINTGTIGRVVPR FT LQRITKKMNLPTVKGNVILSLDHLLEYKPNQVDLFNTRATHKQFESWYEAVRSEYELND FT DQMGIVMNGFMVWCIDNGTSPDVTGTWVMMDGNEQVEYPLKPIVENAKPTLRQIMHHFS FT DAAEAYIEMRNSEGLYMPRYGLLRNLRDRNLARYAFDFYEVTSKTSDRAREAIAQMKAA FT ALSSVSIKLFGLDGSVAITSEDTERHTARDVNKNMHTLLGMNSPQ" FT mat_peptide <1..387 FT /product="P3 protein" FT mat_peptide 388..543 FT /product="6K1 protein" FT /note="VATQ/SDTS is predicted P3/6K1 cleavage site" FT mat_peptide 544..2439 FT /product="CI protein" FT /note="VQTQ/SLDE is predicted 6K1/CI cleavage site" FT misc_feature 778..1155 FT /note="DEAD-like helicase superfamily; Region: DEXDc" FT misc_feature 1321..1617 FT /note="helicase superfamily c-terminal domain; Region: FT HELICc" FT mat_peptide 2440..2598 FT /product="6K2 protein" FT /note="VQLQ/SKEE is predicted CI/6K2 cleavage site" FT mat_peptide 2599..3168 FT /product="NIa-VPg protein" FT /note="VTTQ/GKKR is predicted 6K2/NIa-VPg cleavage site" FT mat_peptide 3169..3897 FT /product="NIa-Pro" FT /note="VVVE/SKSV is predicted NIa-VPg/NIa-Pro cleavage FT site" FT mat_peptide 3898..5448 FT /product="replicase" FT /note="RdRp; VAMQ/SKRD is predicted NIa-Pro/NIb cleavage FT site" FT mat_peptide 5449..6288 FT /product="coat protein" FT /note="CP" FT 3'UTR 6292..6546 XX SQ Sequence 6546 BP; 2098 A; 1114 C; 1506 G; 1828 T; 0 other; agccgtattg ctttgttgaa taagattaga gagacttgga tatattgtgg tagaaaaatc 60 ttttcattta tatttagtgc cgtcaatagg tgttatggag atattttgta ttttgttaat 120 gttatgcttg ttttctcgct tatggtgcaa atgacatccg ttatgcatgg cataatcaat 180 gaagctagaa agaataaggc actcatgcat cagatgacaa tagatcaaaa cgagaaagcc 240 gttgtgcata tttatgacat gtgccataaa atggaaggca actcacttac acgcgagaat 300 ttcttgaatc acattcgtag tgtgcgacct gatcttgaag acacagcaca atatatggtt 360 tgtggaaaat taagtgttgc cacacaagca aagacaggaa cacaagtgca atttgaaaag 420 atcattgctt ttatggctct aattacgatg ataattgaca ctgaaaggag cgatgcgatt 480 tttaaagttc tcaacaaact gaaatctgtt tttcaaacaa tgggtgataa tgtgcaaaca 540 caaagtttag atgaaatcat cagcattgat gaagataaga aactcacaat agactttgaa 600 atcgatacaa gtaaggaatc accgtcaatg tcttttgatg tgaattttga atcatggtgg 660 accgtcattg cacaaatagg tcatagcaca ttacagaaat acagggcaat ttctcgaatt 720 acacgtgaaa cttcagcaca tgtggcgaat caaatttcag tggcaagcga gactgaattc 780 ctaattagag gtgctgttgg ttctggtaag tcaacgggtt taccacatca cttatctaag 840 aagggtaaag ttttattgct tgaaccaaca cggccattgg ctgaaaatgt tagtaagcag 900 ctagcaaaag aaccatttta ccagcaagtc actcttcgca tgcgcgggtt aagtaagttt 960 ggatctagta acattaccgt gatgacaggt ggatttgcat ttcactatta tgtgaacaac 1020 cctcatcaat tacgcgattt tgactatatt attattgatg aatgccatgt cttggacagt 1080 tcgctcatag ctttcaattg tgttcttaag gaatttgagt ttccaggaaa attacttaaa 1140 gtgtcggcaa ctccacctgg acgagagtgt gaattcacca ctcaacatgc agtgaagctc 1200 aaagttgaag accagttatc gttccagcaa tttgtgcaag cacaagggag tggttcaaat 1260 gcggatatgg tgcagcacgg ctcaaattta ttagtttatg tcgctagtta taatgaagtg 1320 gacacattgt ctcgactgct ggttgaaaag cactttaaag tgactaaagt tgacggaaga 1380 acgatgcaga tgggtggagt ggagattata acagccggta cagagagcaa accgcacttt 1440 atcgttgcaa cgaacattat tgaaaatggg gtcacattag acgtggattg tgttatagat 1500 ttcggtttga aagttgttgc tacgcttgac agtgataata agtgcgttag atataataag 1560 aaatctgtgg cgtatggtga gcgtattcag aggcttgggc gtgtcgggcg gtataaacct 1620 ggatttgcac taagaattgg acacactgaa aagggaatag aggaaatacc tgaatttatt 1680 gcaactgagg cggcgtttct atcgtttgca tatggattac cggtaacgac tcaaagtgtg 1740 tcaacgaata tactcggaag atgtacagtt aaacaggctc gaagtgcatt gaattttgaa 1800 ctcacacctt tctttgtaac acattttgtt aagttcgatg gcaccatgca tcctgagata 1860 cacaaaatcc ttaaatgctt taaacttaga gaatccgaga tgttattgaa caagacggca 1920 atcccatatc aatataccag tcagtggatt actagaagag agatggagag aattggagtt 1980 catattgact gcgatgataa tgttaaaatt cctttctatg ttaatggtat tccagataaa 2040 gtctttgaaa gcttgtggga caccgtctgt aagtatcgta gcgacgccgg atttggcagg 2100 cttacaagtg ttaacgcaag caaggtgtgc tataccctaa gcacggatcc gacagctgtg 2160 ccacgaacta tcgcaataat tgatcatctg cttagtgagg aaatgatgaa gaagaatcac 2220 ttcgatacat tgagttcagc aatcacaggg cactcgtttt ccctcaatgg aattgcagag 2280 tctattcgaa agagatattt gcgtgaccac acagctagta atattgctac tctacaacaa 2340 gcaaaaagcc aattacaaga atttaatgta aagcatataa atttcagcaa ccttggtgcg 2400 cttgaggatt taggtatttt aaatgcagtg caattgcaga gcaaagagga aattggcaag 2460 tttcttggtc tgaagggtaa atgggatgga aagaaatttt tgaatgacat atttcttgtt 2520 ggtttggcat tgattggtgg tggctggatg atgtgggagt acttcacgaa aaagatgaac 2580 gaatgtgtca caacacaagg taagaagcgg atgttacaga aactcaaatt tcgcgacgca 2640 tttgatagga aagttggaag agaaattttt gctgacgatt acacgatgga gcatactttt 2700 ggtgatgctt atactgcgaa gggtaaagca aagggaagtc atcacacaaa aggaatggga 2760 cgtaaaacgc gtaacttcac acacatgtat ggtgttgaac ctgagaatta cagtatgatt 2820 cgcttcattg atcccttaac tggtgcagtg cttgatgaag acatacatgc agatattcgg 2880 ctagttcagg aagagtttgg tgaaattaga aaggagaaaa ttttggaagg tgatcttgat 2940 cctcaaacaa ttgtcagcaa acctggaatt caggcatact tcataggaaa aggaacggaa 3000 gaagcactaa aagttgattt gctaccacac cgaccgaccc ttatgtgtaa aaacatgaat 3060 gcaatatccg gatttccaga gcgggaagat gaactacgtc aaactgggat accccaaaag 3120 atttcgcgtg acaaagtgcc ggaaccagaa gcagcagttg ttgtggaaag caagtcagtg 3180 tataaaggag ttcgtgatta caacaatatt gccacgttag tttgtcaact aacaaaccaa 3240 tcggacggac atagtgaaag catttatggg attggttacg gaccatacat actcacgaat 3300 ggacaccttt tcaggagaaa caatggtagc ttaacggtac gcacatggca tggtgagttt 3360 gaagtaaaga acaccacaca actaaagatt catttcataa aaggaaaaga tgccattata 3420 atacgtatgc ctaaagattt tccaccattt gcgagaagga atttcttcag agggccagtt 3480 agagaggaaa gagtttgtat gattggcaca aattttcaag agaagagtct tagagcaact 3540 gtatctgaat cctcactaac aacacctgaa ggatctggtt ctttttgggt acactggata 3600 acaacacaag atgggtattg tggtatgcca ttagtttcag ttaatgatgg ctatattgtt 3660 ggctttcatg gactgacatc gcgcgattct agcaagaatt tctttgtgcc attagagaat 3720 gattttaagg agaagtattt cgatagtgct gagagtctta attgggataa gcattggttt 3780 tggcaacctg acaaaattgc gtggggttca ctaaatttaa tcgagaatca gcccaaggac 3840 gaatttaaga tttcaaagtt gatcacagac ttattcaagg acaccgtcgc tatgcaaagt 3900 aaaagagata gatgggtgta tgaatcagcc actggcaatc taaaggcttg tggacaggcg 3960 gagagcgctc ttgtgactaa acacaccatt aaaggtaagt gtccccaatt cgcccaatac 4020 ttagcaagca atgatgaggc catgagattc ttcaaaccat tgatgggagc ttaccaacca 4080 agtaaattga ataaagcagc cttttgtaaa gatttcttta agtataacaa gccagttgtg 4140 ttgaatgagg ttgattttac atcttttgaa gcagctgtga gtggcgttgt cgcaatgatg 4200 acatctttcg gttttagtga atgtatgtat gtaacagatc ctgatgagat acttaattca 4260 ctcaacttga aatccgcaat tggtgcacaa tacaaaggca aaaagcaaga ctacctctct 4320 ggttgtgatg aatttgataa agagcggttg ctacttctca gtagcgaaag gttgttctgt 4380 ggaatgaaag gactgtggaa tggttcatta aaagctgaat tgagaccact cgaaaaggtc 4440 gtagctaata aaactagaac atttacggcc gctccaatcg atacacttct tggtgcaaag 4500 gtttgtgttg acgatttcaa caatcagttt tatagcttga accttaagtg tccatggaca 4560 gtaggaatga caaaattcta tggtgggtgg gatcaactca tgagaaagtt accagatggg 4620 tgggtacatt gccatgctga tggttctcaa ttcgacagtt cattaacacc acttttactc 4680 aatgctgttc taggtatacg gaagaccttt atggaaaagt ggtgggttgg tgaagaaatg 4740 ctcgagaact tatacgcaga gattgtatat accccaattc tcaccccaga tggcacaatt 4800 tttaagaagt ttagaggtaa taatagtggt caaccctcaa ccgttgtgga caataccctc 4860 atggtcgtta ttgctgtgta ttatgcatgt cacaaagaag gctggagtga ttcagatatt 4920 cagaataggc ttgtgttctt tgcgaacggt gatgatatca ttctgtcaat tgaaaaggaa 4980 aacgaggtga ttttggatac atttgcaact tctttttctg agttaggttt aaattataac 5040 ttcaatgaga gaacaactga acgcgaaaat ttgtggttca tgtcacacaa ggcaatcaaa 5100 attgaggatc tgtatattcc aaaacttgaa ccagaaagaa tcgtgtcaat tcttgaatgg 5160 gaccgaagta aagaagtcat gcacagaaca gaagctattt gtgctgcgat gattgaggca 5220 tggggttata ctgatttact acgtgaaatt cgaaagttct acctgtggct gattgagagg 5280 gatgagtatc gagaactcgc agcaattggg aaggcaccat atattgccga aactgcactt 5340 aagaagctat acactgacag agatgctaat gaggttgagc tacaaaaata tctcagatca 5400 ttaacaccgg atagtatgat gagttgtggt gaaagtgtct atctgcagtc tgacacgagt 5460 agtgaaccta gaaatcttga tgctggaatt gaagagaaga aaaagaaaga ggaaaagtca 5520 caaggcggaa aggaagctac atacagcaag gctggagcaa gtagtgcaac taaaattgac 5580 aaagatatta acactggaac aatagggcgt gtcgtgccac gacttcaaag aattactaag 5640 aaaatgaacc tcccaaccgt aaaaggaaac gttattctta gtctcgacca cttacttgag 5700 tataaaccca accaagttga tctttttaat acacgtgcta ctcataaaca atttgaatca 5760 tggtatgagg ctgttagatc agaatatgaa ttgaacgacg atcagatggg gatcgttatg 5820 aatggtttca tggtatggtg cattgataat ggaacttctc cggatgttac tgggacgtgg 5880 gtgatgatgg atggcaacga acaagtcgaa tatccactga agccaatagt tgaaaacgct 5940 aaaccaacac ttcgacaaat catgcaccat ttctcagatg cagctgaggc atatattgaa 6000 atgaggaact ctgaaggact atatatgcct aggtatggtc ttttgaggaa cttgagggat 6060 agaaatcttg ctcgatatgc atttgatttt tacgaagtta catccaaaac atcggatcga 6120 gcaagagaag caattgcgca gatgaaagca gcagccctca gcagtgtttc catcaaactc 6180 tttggacttg atggaagcgt tgcaatcact agcgaagata ctgaaaggca tactgcacga 6240 gatgtgaaca agaacatgca cacccttctt ggtatgaatt ctccgcagta aaggttaggt 6300 aaactaacca cagttacaac ttcgcgtcgt ctagtagtat tataaagtag atcatttact 6360 tccttttgtt tagtgtgggt ttcccatctt cgttggttca gttgtgttag tgtggttgtg 6420 ccaccattgt attatgcatc tactttagtt tacgaaaaac cgggagaacc actgcaacgt 6480 cggattttac cagtgtgagt ttctcacgag tgtggaacga gatttggcaa tgtttgttgt 6540 cctaaa 6546 //