ID AY864849; SV 2; linear; genomic RNA; STD; VRL; 3010 BP. XX AC AY864849; XX DT 02-FEB-2005 (Rel. 82, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 4) XX DE Lily virus X replicase (RdRp) gene, partial cds; and triple gene block DE protein 1 (TGB1), triple gene block protein 2 (TGB2), and coat protein (CP) DE genes, complete cds. XX KW . XX OS Lily virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-3010 RX DOI; 10.1094/PDIS-92-4-0648A. RX AGRICOLA; IND44053810. RA Jordan R.L., Guaragna M.A., Van Buren T., Putnam M.L.; RT "First Report of a New Potyvirus, Tricyrtis virus Y, and Lily virus X, a RT Potexvirus, in Tricyrtis formosana in the United States"; RL Plant Dis. 92(4):648-648(2008). XX RN [2] RP 1-3010 RA Jordan R., Guaragna M.A.; RT ; RL Submitted (23-DEC-2004) to the INSDC. RL Floral & Nursery Plants Research Unit, US National Arboretum, USDA-ARS, RL 10300 Baltimore Ave, Beltsville, MD 20705, USA XX RN [3] RC Sequence update by submitter RP 1-3010 RA Jordan R., Guaragna M.A.; RT ; RL Submitted (23-JUN-2005) to the INSDC. RL Floral & Nursery Plants Research Unit, US National Arboretum, USDA-ARS, RL 10300 Baltimore Ave, Beltsville, MD 20705, USA XX DR MD5; 8fb8e021e65aa27be6afe5fecff63c19. XX CC On Jun 23, 2005 this sequence version replaced gi:58294197. XX FH Key Location/Qualifiers FH FT source 1..3010 FT /organism="Lily virus X" FT /host="Tricyrtis formosana var. stolonifera" FT /strain="TF" FT /mol_type="genomic RNA" FT /db_xref="taxon:12194" FT gene <1..1155 FT /gene="RdRp" FT CDS <1..1155 FT /codon_start=1 FT /gene="RdRp" FT /product="replicase" FT /db_xref="GOA:Q4QTI8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q4QTI8" FT /protein_id="AAY87148.1" FT /translation="ALLFQTIEARIKLATPADNEKEMLMKRDIGDILFLNYQKAMKLPV FT EPIPFSKELWQACREEVQAKYLEKPLANLINGKDRQSPDFPKDKIALFLKSQWVKKTEK FT IGAIKVKPGQTIASFMQDTVMVYGTMARYMRRIRRAYQPDNIFITCENTPEELNEWAME FT NWCFRGNAHSNDFTAFDQSQDGAMLQFEVLKAKHHCIPPDIIESYIMLKTNAHIFLGTI FT AIMRMSGEGPTFDANTECAIAYHHTKYQVEQGTAQLYAGDDMAQDTTPILKPSFKLIAD FT RIELKSKEVTHTQVPGEYATFCGWCITPKGIIKEPRKLFASLQLAKHIGKTMEVKTNYA FT NDLAHAYRLGDELQDVLTPDEAAFHQATVRDLVTMGGVDFQWHP" FT gene 1184..1834 FT /gene="TGB1" FT CDS 1184..1834 FT /codon_start=1 FT /gene="TGB1" FT /product="triple gene block protein 1" FT /db_xref="GOA:Q4QTI7" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q4QTI7" FT /protein_id="AAY87149.1" FT /translation="MEFCGGTLRTRFQRTSVPNSPVTVVHTVAGSGKTTFIRNLLIDHP FT QLVARTYGTPDVPNLLGYGIRDRHGDAHIVDEYPAADLRSHPSVSIVFADPLQHHGEVK FT PAHFTCSHTHRFGKSTCSLLGTLGVHCTSDKEDSVTFAEAYLAEPVGTFIALGEDAELV FT LDNHRVEYFTPCQALGLTFPSVTLLTDAPIEDQPPVSRYIALTRHTDSLLILS" FT gene 1831..2160 FT /gene="TGB2" FT CDS 1831..2160 FT /codon_start=1 FT /gene="TGB2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q4QTI6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q4QTI6" FT /protein_id="AAY87150.1" FT /translation="MMPLTPPPDYTKPFIAVVVGGTLAVLVLLLTRSTLPHTGDNLHSL FT PHGGSYCDGTKRIRYGGPHRSHVPELPAKSWALITVVAILIALHFSCLRTHRVHRCVLC FT HTTGN" FT gene 2295..2900 FT /gene="CP" FT CDS 2295..2900 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q5G1M9" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q5G1M9" FT /protein_id="AAW70039.1" FT /translation="MTTFVPDAKTWADTAYTAQSESVATTEELQSIATLWEGIGISAAN FT FFDVAFQLAMRCSDGHASSLTVLSGNCTVAPTVTLKAAAGLVKAVLPLRQFCRYYAKFV FT WNWRLSHDLPPANWADSQFPAEARFAAFDFFDGVTNSAAPLPPDGLIRPPTELELSAAQ FT TAKFAALARVRGSGFVTTAAEITHGRAEVSRTMLLSPP" FT 3'UTR 2901..3009 XX SQ Sequence 3010 BP; 745 A; 889 C; 707 G; 669 T; 0 other; gctctattgt tccagacgat agaggcccga atcaagctgg ccacgccagc agataatgag 60 aaggagatgc tcatgaagag ggacattggg gacatcctgt tcctcaatta ccagaaggct 120 atgaaattgc ccgtagagcc gatccccttc tccaaggagt tgtggcaagc ctgccgtgaa 180 gaggtccagg ccaaatacct tgagaaacct ttggctaacc tcatcaacgg caaagaccgc 240 cagtcccccg attttccaaa ggataagata gcactcttcc tgaagtcaca gtgggttaag 300 aagactgaga aaatcggggc tatcaaagtc aaaccagggc agaccatcgc gtccttcatg 360 caagacaccg tcatggttta tggcaccatg gccaggtata tgagacgcat ccgcagggcc 420 tatcaaccgg acaatatctt catcacctgc gagaatacac cagaggagct caatgagtgg 480 gccatggaaa attggtgttt tagaggcaac gcccactcca atgatttcac cgccttcgac 540 cagtcccagg acggggcgat gcttcaattc gaagtgttga aggcgaaaca tcactgcata 600 ccacctgaca tcattgagtc ttacatcatg ctcaagacta atgcgcatat attcttgggc 660 accattgcca taatgcggat gtcaggtgag gggcccacct tcgatgccaa cacagaatgc 720 gccatagcct accaccacac aaagtatcag gtggagcaag gcaccgccca actctatgcc 780 ggcgacgaca tggcacaaga cacaacaccg atccttaaac cgtctttcaa actcattgct 840 gataggatcg agttgaagtc caaagaggtc acccacacgc aagttcctgg ggagtacgcc 900 accttctgcg ggtggtgtat aacaccgaag ggtatcatta aagaacccag gaaactcttc 960 gcctcacttc agctggctaa gcacattggc aagactatgg aagtcaagac aaattacgcc 1020 aatgacttag ctcacgctta ccgtctgggt gatgaactgc aagacgttct tacaccagac 1080 gaggccgcct tccaccaagc caccgttagg gacttggtaa ccatgggagg cgtcgatttc 1140 caatggcacc cctagaaaag gggttaagtt accgccgatt tgaatggagt tttgcggcgg 1200 tacactacga acccgtttcc agcgcaccag tgttcctaat tcacccgtca ctgtcgtgca 1260 caccgtagct gggagcggaa aaactacatt tatcaggaac ctcttgatag accacccaca 1320 actagttgcg cggacttacg gcaccccaga cgtacctaat cttctaggtt acggcatccg 1380 cgaccgtcac ggtgacgctc acatcgtaga cgagtaccct gctgcagact tgaggtctca 1440 cccctctgtc tctattgtct ttgctgatcc actgcagcat cacggtgagg ttaagcccgc 1500 ccacttcacc tgctcccaca cgcacaggtt cggcaagtct acctgctcat tgctaggcac 1560 tctcggagtt cactgcacgt ctgacaaaga agactccgtc actttcgctg aagcatacct 1620 cgccgagcct gtgggcactt tcattgcgtt aggtgaagac gctgagcttg tgctcgacaa 1680 ccacagagtc gagtacttca ccccttgtca agctttgggc ctaactttcc cttcagtcac 1740 tctgttgaca gacgcgccca ttgaagacca accacccgtc tcgcgataca tcgccttgac 1800 aaggcatact gattcactgc tcatcctcag ctgatgcctc ttacaccacc accagactac 1860 acaaagcctt tcattgcagt tgtggtcgga ggcactttag cagttttggt actactgctc 1920 acacgcagca cccttccgca tacgggcgac aatttacaca gtctgcccca cggaggaagc 1980 tattgcgacg gtaccaaaag aatcagatac ggcggcccac accgctcaca cgtcccagaa 2040 ctacccgcca agtcctgggc cctcatcact gtcgtggcta tactcatcgc cctacatttt 2100 agctgcctac gcactcatcg cgttcaccgt tgtgtgttat gtcacacaac cggcaactga 2160 aacgtgttac atcgaggtca cagggcacaa tgcagtgata agaggttgcg tcaatgtgcc 2220 gcacttgcca gaggtcgtct cggcattagc cccagcatcg gggttaagtt gccaaaattt 2280 ccgaaatcat tactatgacg acttttgttc ctgacgctaa gacctgggct gacactgctt 2340 acacagctca gtctgaaagt gtagctacca ctgaggagct acaatccatt gccacactgt 2400 gggaaggaat cggcatatct gctgccaatt tcttcgatgt ggcattccag ctggccatgc 2460 gttgcagtga cgggcacgcc agctcactca cggtgctatc gggaaactgc accgtggccc 2520 cgacagtgac cctcaaggcc gctgccgggc tggttaaggc tgtactacca ttgcgacagt 2580 tctgtcgtta ttacgccaag ttcgtctgga actggcgcct tagccatgac ctcccgcccg 2640 ccaactgggc cgactcccaa tttcctgcgg aagcacgctt tgctgctttc gatttctttg 2700 acggagtaac caactctgct gccccactac cgcctgacgg ccttatccga ccaccgactg 2760 aactggagct ctccgcggcc caaactgcta agtttgcggc cctagctcgt gtccgtggtt 2820 cgggtttcgt cacaactgca gcagagatta cccatggccg agcggaggtg tctaggacaa 2880 tgctgttatc tccaccctag acaccaataa tcgcgagcag ggactcgtcc aggtacagcc 2940 tggttcaacc ctagcccacc atacactaaa cttaatcaac tgtgtgggcg aaactcccaa 3000 gagagtttta 3010 //