ID AY860978; SV 1; linear; genomic RNA; STD; VRL; 7496 BP. XX AC AY860978; XX DT 29-JAN-2005 (Rel. 82, Created) DT 30-SEP-2006 (Rel. 89, Last updated, Version 4) XX DE Strawberry latent ringspot virus NCGR MEN 454.001 segment RNA1, complete DE sequence. XX KW . XX OS Strawberry latent ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-7496 RX DOI; 10.1016/j.virusres.2006.06.001. RX PUBMED; 16837095. RA Tzanetakis I.E., Postman J.D., Gergerich R.C., Martin R.R.; RT "A virus between families: nucleotide sequence and evolution of Strawberry RT latent ringspot virus"; RL Virus Res. 121(2):199-204(2006). XX RN [2] RP 1-7496 RA Tzanetakis I.E.; RT ; RL Submitted (19-DEC-2004) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 RL Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 4374c4fcba5d0931f5b88d9741d3bb10. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..7496 FT /organism="Strawberry latent ringspot virus" FT /segment="RNA1" FT /isolate="NCGR MEN 454.001" FT /mol_type="genomic RNA" FT /db_xref="taxon:28351" FT 5'UTR 1..252 FT CDS 253..6936 FT /codon_start=1 FT /product="250 kDa polyprotein" FT /db_xref="GOA:Q5G2U4" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q5G2U4" FT /protein_id="AAW63128.1" FT /translation="MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQ FT LGGLVSTGRCASAKERNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDP FT ITLCFAHHITYGPGDSYISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEV FT LTSVVRTAIVGGGFGSPTFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK FT GSLDLKLTLQDVDEMTQALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRT FT VALAQKAYDQAKEKPAVERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHN FT KKHDIDFVDCCDTEYQIQPSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGK FT TPLELMIQYQVEPTGDLLLDIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLR FT YCLYAPFIQGDQLKHLMVVLNAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGF FT LDGVMTKLKELIGPIINAASFVWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVC FT GLLLFLGSLKGLKTIVESFGIPLAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDL FT VQNWDKPSEVKCIDEQIIEVLVEESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQ FT KCANFKQAFEVGASEASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGG FT QDAAGRFFQDIVGGTQEVFYTITGEKSEFLDYIYATVGVDFQAWRAEVLELTTATPTSI FT FLGPQERLKRLRACKDKADRLILQMDSRKVPGAYITHFNSLLQSLDRALVECQQALSVG FT KWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQS FT AVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQAGL FT TPSAVIHCKKAFENRRLILAEVTAVEGGRYRDRYRFTIHQKNEPYARDDRFQVMNYDQF FT MQYVVNQSKDHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFKTAGITIPFCMLKCIEGR FT MVTYYDEEKFTEMTVELSETDADIIHSRLDPQMITQRLQMLLPKAAYVNLKNHFGLGTD FT PFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLETSKRGFLQVTKELAQGACRAISDAPFL FT VKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFAALGTMRASGSLSSSQDQETRRTASG FT RERRRYLLEASGPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLM FT VYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLE FT KWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKC FT VRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAG FT SGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGDEFFDAETVFPEGLLLPSQAPR FT QATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLKDRNLDIFKKGMMKYKAVAAD FT MSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLNGVNGDNEYRGMVVSTSEGW FT PEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDALSATTIPCIVGLDTAKDE FT RLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWT FT ILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGDEHRERRLHLMLAATTR FT LGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFTDCVELAVVG FT DDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFK FT ARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFHYGDKELYCKWRRD FT LISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKDAASDVAPNVHIV FT PAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRSTVRNSLKRVHQ FT RSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLLEAVTAAKGW" FT mat_peptide 253..2409 FT /product="protease cofactor" FT mat_peptide 2410..4053 FT /product="helicase" FT mat_peptide 4054..4137 FT /product="VPg" FT mat_peptide 4138..4908 FT /product="protease" FT mat_peptide 4909..6933 FT /product="polymerase" FT 3'UTR 6937..7496 XX SQ Sequence 7496 BP; 1850 A; 1507 C; 1834 G; 2305 T; 0 other; ttgaaaagca atctgcgaac tttgttacta aatatttctt ctaaagctat cctgtatttt 60 gatacagacc cctttcgcat ttcactagct gctgggccta tccagtttgt tctgttcctt 120 gctattgctt gttttgacaa gtattgttct tttgttgtgc tgcggttata cagctttcct 180 tgtggaattt gagtcttaac tcaaacaaca ttttctttta tcttactctc tgtttaacca 240 ttttaatttt ccatgggtta ctcacgaggt tcacgtggtg gtgctgataa gcccaaactg 300 tgtggaattt gttttgctag ctttcctgat gctcaggaga ggaagtgcca ctacaggaag 360 tataactgcc gggactctgg tggtcaactt ggtggccttg ttagcacagg gcgctgtgct 420 tctgctaaag agagaaattt gaaagttgag gctgatagga aggaactgga gtcctcctgt 480 gatgatttcc tgactgagca ggatatggag atgacattta tgtcagatct ctttgagttt 540 actgaagggt tctctggaga tcccataact ctttgttttg cccaccatat tacttatggt 600 cctggagatt cttatatctc aaggcccata taccaagcac ctggcttgga tgtagctgac 660 tatgccgcat tccagaatga gaaagttaag ggtactcagc gcgagttcct tactactgat 720 cgcaagtatg atgcggaggt tctaacttct gtggttagaa ctgctattgt gggtggtggt 780 ttcggatcac caaccttcga ttacactggt ctcggtggcg atggactcaa gtaccgattt 840 gattctgacg atctctggtc agaccattct aagggccttg gtaggtttgt ttctgcgggc 900 ttcactgaat cgactaaggg atcattggat ttaaagttaa cattgcagga cgttgatgaa 960 atgacccaag ctctttctga tgagtgggct gaatgggttt attttgaaga ggatctcgag 1020 gaatatttgg aggagtatct caactctaaa attgccctcg ctcaagagat tcgtgctcta 1080 aagcagaaaa gaactgttgc cctagctcag aaagcttatg accaagctaa ggaaaagcct 1140 gctgttgaga gacccatctc cccagatact gttcttcaat ctgccaattc ctatctgtct 1200 ggtaccaaat ggtgctacga ttctgaggat gaggactatc tcccagtagc tcctcttgat 1260 aagttccaca ataagaaaca tgatattgat tttgtggatt gttgtgacac agagtatcaa 1320 attcagcctt caggcacaat ctacacagag acttggttca ttgatggctg tctccccgga 1380 tgttggttta aaagaggagt tgctatcgat gaggcagttg tttgtgagaa actcccctta 1440 attgggaaaa ctcctctgga gcttatgatt cagtatcagg tggagccaac aggtgatctt 1500 ctcttggaca ttcaacgtgc attgtttgca tactatgaga aagaagcact tccaaataag 1560 aagtatttca acttgaatgg tgtgccaact atgattgttt tggaggattg gcgttgtgat 1620 ctaagatact gtctatacgc accattcatc caaggagatc aacttaagca cttgatggtg 1680 gttttaaacg ctccattacc aggttggtta gttgatttcc caaagaggag gaaatctggg 1740 gttttgcaag cgagtggttg gaatccactg cgctatttct cgaagcaggc aactcttggc 1800 ttcctcgatg gagtgatgac taagctgaag gaacttattg gtcctataat taatgctgcc 1860 tcatttgtct gggatttaat cattaaggcc aaagattggg cttttaaagc acttgaagat 1920 atgattgaga agcgtggtga aatattaaag gctcttctcc agcccctatt gtatgtgtgt 1980 ggtctccttc ttttcctggg ttctctgaag ggcttgaaga ctattgttga gtcatttggt 2040 attccacttg ccattttgac gggcgctgca atcggccttg gtgtgtatgt tcttgttaca 2100 ttcttggggc aggctcatat gggtgccctc aagaggtcaa ccaagatttg ggaccttgtt 2160 cagaattggg ataaaccttc tgaagttaaa tgcattgatg agcaaatcat tgaggttttg 2220 gtggaggaaa gtcctgacaa agaggagtgg gttcgagagt tactagcttc accgcattat 2280 gttcctgaat gtgttattga tcttactcat atgaaggatt tactctcccc acagaagtgc 2340 gctaatttca agcaagcctt tgaggtgggt gcaagtgagg cctcttctcc tggaatgctc 2400 tttggatctg gctttatttg gaagatcttg ctcctcttgt gtcccctttc catgtttgga 2460 gtttcaaaaa ctctatcatg tgcgaaggat ctgattacta ttcaaggggg ccaagatgct 2520 gctggacgct ttttccagga tattgttggt ggcacccagg aggtcttcta cacaatcact 2580 ggtgagaaga gtgagtttct ggattatatt tatgccacag ttggtgtgga tttccaggct 2640 tggcgtgctg aggttctgga gctaacaaca gcgactccta cctcaatctt cctgggtcct 2700 caagagcgtc ttaagagact ccgtgcttgc aaggataagg ctgatcggct catccttcag 2760 atggactcgc gaaaggttcc tggggcttat ataacacatt tcaatagcct tctgcaatcc 2820 ttggatagag ctttagtgga atgccaacaa gctctttccg ttggtaaatg gaggaagacg 2880 cctgcttgca tttggcttta tggtgattct catgttggga aatctgtttg ctcacagtac 2940 ttgattgatg atgttctaga ttctcttgat tatgcacaga ctggtagggt tttttcccgt 3000 aatggtagtg actctttctg gtcctgttac aagaatcaga gtgctgtttt gtacgatgat 3060 tttggagctg tctctgaggg tggtcatttt gatgaagcgg agattataag actgatagcc 3120 cctgctccct tacccctgaa tatgccaaat ttggaagcaa aggggaatac ctgctgtaca 3180 tcagattttg tgttcattac agccaatcaa gctggtttaa ctccgtctgc tgttattcat 3240 tgtaaaaaag catttgagaa caggcgattg atcttggccg aggttacagc agtagaaggt 3300 ggccgctatc gtgacagata cagattcacg attcaccaga agaatgagcc atatgctaga 3360 gatgaccgtt tccaggtgat gaattatgac caattcatgc agtatgtggt aaatcaatca 3420 aaggaccact tctcagagca agttgatctg cgtgatgctc ctcatacaca aatatttgct 3480 gcagctgacc agattgctgc tgaagctgag gagggtttca agacggctgg tataactatt 3540 cccttctgta tgcttaaatg tatcgagggg agaatggtga cgtactatga tgaagagaaa 3600 ttcactgaaa tgacagtaga attatccgaa actgatgcag atatcatcca ctcgcgcctt 3660 gatccacaaa tgataacgca gaggcttcag atgcttctac ccaaggctgc ctatgtcaat 3720 ttgaagaatc actttggtct tggaacagat ccgtttgagc agcccaatcc ttactttaac 3780 tgttcgcaac gggcaaaggt tattggacga tttttgaagc ctaaggtcac ggaggcccaa 3840 ctcgaaacca gcaagcgtgg ttttcttcag gtgactaagg agctagcaca aggagcttgt 3900 agagctatat ctgatgcccc ctttctggta aaacttttac tgggatttgg tgctttgtac 3960 tttgtgggtc tcccaatttt gggttggtta aagagcttgt actctgctcc ttccttgatg 4020 acatttgcag cattgggaac tatgagagcc tcgggttcgt tatcgagttc acaggatcag 4080 gaaacaaggc gaacagcctc tgggcgtgag agaagacgtt acctgttaga ggcttcaggt 4140 ccgggagctc tggaagccaa gccccaagat gttgaaactg agctggcatc actgtccaag 4200 catttggtcg gtttcaccag tatcgacttt cctgatcatc attatcgagg aatagccctt 4260 ggtggtacta gggttttaat ggtctatcat gtttggctgg aactacatag tggttgttac 4320 aaagtgggtt ctctctcgaa aacctttcct ttcaccgtta atcgaaagaa ctgcaaattc 4380 cagcggatag gattgaagga tttggttatt gttgactttc ctcctacttt tgtgtccttt 4440 ccagttctca agctggaaaa atggttgctt gcctctcatg atccgttcat ggcaggttcc 4500 gggtggttta tggaaatggt tttccaacgg aatggagtct tggaagtagc tcgagaagag 4560 gcggactata ctctcctcga tacacatgat gtttacgatg ccgcctttct taagggggtt 4620 gggctcaaca agtgtgtgag gtacactatc tgtgatgatg ccggtactgg ctatcggaat 4680 gattttttct atgtttcaca gtgtggcaca ccccttgttg ctaactatgg taaaggaaag 4740 ggcctaaaga tagcttctat ccatgtggtt caccacttct cagctactga gaaggatact 4800 attatagctg gctctggtag cttgctcaca aaagaggaat atctcgaggc tagtttgctg 4860 ctcggggata ttaaacaccc tcttgagact gaccgtattc aggcatcggg ttgcttatct 4920 ggggatgaat tttttgatgc tgagacagtt ttccctgaag gactcctact tccttcccaa 4980 gcccctcgcc aggccacaag tagtgagatt cataagagct ccatttcgga tggtttggaa 5040 aagctggttg gagagaagag gaaaacagag cctgccatca tcagcaatcg ggatactcgc 5100 cttaaagatc gcaatctgga tatcttcaag aagggcatga tgaagtacaa agctgttgct 5160 gcagacatga gcccagttac agatgaagag gagaaaattt ggaatgtgac ttgggatagt 5220 atctttgacc ttcctggtgg catccagagt aagtgtcatt tactctcgga agatgagaat 5280 ctcaatggag tgaacggaga taatgagtac cgtgggatgg ttgtctcaac cagtgaaggc 5340 tggccagaag ttttgaacag gaaaaatggt gaggcaggaa aggaaagatt tcttcttggc 5400 ctgcctggat gctacacgtt gaatcgtaat cttcctatgt accaaaggat attggatttg 5460 gatgctctga gtgcaaccac aataccctgt attgttggat tggatactgc caaagatgag 5520 agactcccac tttccaagat ataccaagat gttaaaactc gcctctttac cattctcccg 5580 atggagtata attacttggt gcgaaagtat tttggttcct ttgttgcaga gctaatgaag 5640 ttacacaatt gcataccaac aaaagtggga atcaaccctc ttggttatga ctggacaatc 5700 cttggaaaga agatgcatgc caaaggaacc aactggttca atggggatta ttcccggttt 5760 gatggtgtca caccacggtg ccttctgatt gaaatttcca atagaatcac aaaactttac 5820 ggtgatgagc atcgggaaag aaggctccat ttgatgttgg cagcaacaac gaggcttggt 5880 gtggcgggta ttggtcttta tcgggtctca gggggcattc cacccggttt cgcccttacg 5940 gttatagtta attcattggt caaccacttt ttggttagat ggagttggga gcacatgatg 6000 gctagttcct cccttttctt cacagattgt gttgagctcg ctgtggttgg ggatgacaat 6060 ttagttagtg tgaaacaggt tgccgctgag gatttcaact tgaagaaatt atctgcattt 6120 ctggcaggtt ttggtttcac cctgaaggat ggttctgata agaataagga aatcctacct 6180 gagtttaacc caccggagaa gtgtgatttc ctgaaacgat gtttcaaagc tcgaggagat 6240 cgttatctgg cacctctttc atggctctct ctctctgagt cattacactg ggttcgtgag 6300 acaaatatga caaatgctgc tgcaacccag aataatgtag agggattcct gagagaactt 6360 ttccactatg gtgataaaga gctgtattgc aagtggagga gagatcttat ctctttatgt 6420 gctgagaata gagttcccca tccaactagc tactcttttg aagagttgga gcgttcctgg 6480 ttatccggga aaactgtggc ttctatcttt gaaaaggagg agccagagat tgtggttctg 6540 aaagatgctg cttcggatgt tgccccgaat gtacatattg ttccagctca gacatgcctc 6600 aagtggaaac ccaatgaggt gccaactgtg gtttggtgtg gtcctaactg tccgaatcag 6660 cttaggaatg ccaatggttg cttccttatt caggcaccac agggctctcg ttatcctctc 6720 cgaagcacag taagaaattc actgaagagg gtacatcagc gttccgatga ggtttatttt 6780 gctggggctt tagaccaatc tttagttcat tgggttgccg ccttttatgc ctctatgtat 6840 cgtgagtcct ttagtcactc aaagtacatg gcagcatatt ttggggataa tgataaagga 6900 cttctggagg cagtcactgc agctaagggt tggtgattcg ctcttcttcc tcccttcttt 6960 tcttaggcat ttctcaagga gaatatccct ggcccagatg ggctttgaaa aggcaagccg 7020 gtgaacttta tgtgtcacta ccatggaact acatggttta gggtccttaa tcagtccctt 7080 ggttactttt acctcttcat tgtccatgtg ttgaggctga ctttaattag ttggatcttt 7140 ggacccctcc tcgggttatt aggtaagctg taagcaagca gccgctagcg ttctggaata 7200 ccaggcatag tgaggttcag tggcagaaca acgacgccac acgcttgtag accgtatgat 7260 agcctacttt tatgtgcttt tgtagtttag tgcctcctga tgttatctct ttgttgagtt 7320 gtacgtcatt tgttatgcca aattgctttc gtgtgttttc ttgagcctct catgtcttcc 7380 ttcattggat gtacgtgata gttatgctct tcgctttctt ttgtgtttaa taaaggatta 7440 accaggcatc ctcccaggtt tcaccgggtt tagttctggc acttagaata agcttt 7496 //