ID   AY845013; SV 1; linear; genomic RNA; STD; VRL; 1683 BP.
XX
AC   AY845013;
XX
DT   01-JAN-2006 (Rel. 86, Created)
DT   01-JAN-2006 (Rel. 86, Last updated, Version 1)
XX
DE   Ornithogalum mosaic virus isolate VM-19 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Ornithogalum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1683
RA   Smitha R., Krishna Reddy M.;
RT   "Molecular characterization of Ornithogalum mosaic virus from Vanilla
RT   fragrans";
RL   Unpublished.
XX
RN   [2]
RP   1-1683
RA   Smitha R., Krishna Reddy M.;
RT   ;
RL   Submitted (02-DEC-2004) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
DR   MD5; e5a975d7de22b68410174695de118128.
DR   EuropePMC; PMC5877448; 29607262.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1683
FT                   /organism="Ornithogalum mosaic virus"
FT                   /host="Vanilla fragrans"
FT                   /isolate="VM-19"
FT                   /ecotype="Shimoga"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /tissue_type="infected leaf"
FT                   /db_xref="taxon:12204"
FT   CDS             <1..1398
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q2TLZ8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q2TLZ8"
FT                   /protein_id="AAX54482.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAMNYALAKLSIPYEEMESRIRYFANG
FT                   DDLLIAVEPTRGGEILDSLQASFSELGLNYDFNDRTFDKTQLSFMSHQALWDGDMYIPK
FT                   IKQERVVSILEWDRSVLPEHRIEAVCAAMIEAWGYPELLQEIRKFYAYMVTQEPYSAIH
FT                   AQGKTRYISERALVTLYKDEKVVLSDIEPYLQKLAEMSLDCFDEIVSHQAESMDAGGSS
FT                   RPPAPLVRQQDQDVNVGTFSVARVKALSDKMMLPKVRGRTVLNLQHLVQYNPEQVEISN
FT                   TRATRTQFNNWYDKVRDNYGVTDDQMTVILNGLMVWCIENGTSPNLNGNWTMMDGDEQV
FT                   EYPLQPILEYAQPTFRQIMAHFSNAAEAYIEKRNSEQRYMPRYGSQRNLNDYSLARYAF
FT                   DFYELTSRTPNRAREAHIQMKAAALRNTKTKLFGLDGKVGTEEEDTERHVASDVNRNMH
FT                   SLLGVNM"
FT   mat_peptide     <1..636
FT                   /product="NIb protein"
FT                   /note="nuclear inclusion protein"
FT   mat_peptide     637..1395
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT   3'UTR           1399..1668
FT   regulatory      1669..1683
FT                   /regulatory_class="polyA_signal_sequence"
XX
SQ   Sequence 1683 BP; 527 A; 316 C; 404 G; 436 T; 0 other;
     ggtaacaata gtgggcagcc ttcaactgtt gttgacaata ctttgatggt cgtgttggct        60
     atgaactatg cattagcaaa actgtcgatt ccatatgagg aaatggagtc acggattcgc       120
     tactttgcaa atggtgacga tcttctgata gcggttgaac ccacacgagg gggcgaaatt       180
     ctcgattcac ttcaagcatc attctctgaa ctgggactca actatgattt caacgacaga       240
     actttcgaca agacgcaact cagcttcatg tctcaccagg ctttgtggga tggagacatg       300
     tatataccaa agatcaaaca ggagcgagtg gtgtcaattt tggaatggga cagaagcgtt       360
     ttaccagagc acagaattga agctgtatgt gcagctatga tcgaggcgtg gggttatcct       420
     gaactgcttc aggaaatacg aaagttctat gcgtatatgg ttacacagga accatatagt       480
     gcaatacacg ctcaaggcaa aactcgctac atttctgagc gagcactggt gacactctac       540
     aaggacgaga aggtggtgtt gagcgacatt gaaccctacc ttcaaaagtt ggccgagatg       600
     agcttggatt gctttgatga aattgtttcg catcaagcag aatctatgga tgcaggagga       660
     tcaagcagac caccagcgcc gttggtgaga caacaagatc aagatgttaa cgttggaacg       720
     ttttctgttg cgcgagtgaa agcgttgagc gacaagatga tgttaccaaa ggtgcgcggt       780
     agaacagtgc tcaacttaca gcatttggta caatacaacc ctgagcaagt cgagatttca       840
     aacactcgtg ccacaagaac acagttcaat aactggtacg acaaggtgag agataactat       900
     ggggttacag atgaccaaat gaccgtcatt ctaaatggct tgatggtatg gtgtattgaa       960
     aatggcactt caccaaactt gaacggtaat tggacgatga tggatggcga cgaacaagtc      1020
     gaatatcctc ttcaaccaat ccttgagtat gcgcagccaa cattcagaca gattatggcg      1080
     catttctcaa acgcagccga ggcgtatatc gaaaagagaa actcggaaca aaggtacatg      1140
     ccaaggtatg gcagccaacg aaatctgaac gactacagct tagcccgcta tgcatttgat      1200
     ttctatgaac tgacatcccg aacgcctaac agggctaggg aagcacatat acaaatgaaa      1260
     gcagcagctc ttcgaaacac caaaacgaag ttgtttggtt tggatgggaa agtgggtacc      1320
     gaggaagagg acacagaacg gcatgttgca agcgatgtta atcgtaacat gcattcacta      1380
     cttggtgtta atatgtgatt tagtgaaggt gagcttgatc tatacatgga ttagtttact      1440
     ctgttagcat cctttccttt gaattatgcg agatatcatt tatcttagtg accaacacag      1500
     tcaagtattg ggttgggtga taaggtaagt gaatattata gtgtgatttc gaacttatta      1560
     ttgttgtatt gtacttgtta gattaggtga ctgttctaat ttgcaatgaa ttacaacagg      1620
     tgactaatct agcacatatt ataatatctc aatagtgtgt aagagacaaa aaaaaaaaaa      1680
     aaa                                                                    1683
//