ID   AY842136; SV 1; linear; genomic RNA; STD; VRL; 2099 BP.
XX
AC   AY842136;
XX
DT   27-DEC-2004 (Rel. 82, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Leek yellow stripe virus isolate pLYSVg2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2099
RA   Wei T., Pearson M.;
RT   "Molecular confirmation of Garlic yellow streak virus as Leek yellow stripe
RT   virus";
RL   Unpublished.
XX
RN   [2]
RP   1-2099
RA   Wei T., Pearson M.;
RT   ;
RL   Submitted (29-NOV-2004) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, Private Bag
RL   92019, Auckland, New Zealand
XX
DR   MD5; 3df60d71dcbe3853a2d15e90abd1069e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2099
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Garlic plant"
FT                   /strain="Garlic yellow streak virus"
FT                   /isolate="pLYSVg2"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1488
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and coat protein"
FT                   /db_xref="GOA:Q5MAU4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q5MAU4"
FT                   /protein_id="AAW29098.1"
FT                   /translation="NNSGQPSTVVDNSLMVVFSMYYAMEMSNVSSIHDKCVFFVNGDDL
FT                   IIAVEPGSETFLDSLQNLFHQLGLNYNFDNRTRNKEELCFMSHMGILQEDIYIPKLDKE
FT                   RIVSILEWDRAQQPEHRLEALCAAMIEAWGYPELLDRIRKFYYWVLEQAPYNELSALGK
FT                   APFISEAALRNLYTDCEATEAELARYLELYDSDTPVEDTFVFQANDELDAGMQTSKKQK
FT                   DGNDKSIEQRDPTSSQVSSLGKKDGEGSSGTSRNKDRDVNIGTTGTFSVPRIKQIPQKG
FT                   ISIPMDGGKSILNLDHLLQYKPNQLNISNTRATVAQFKTWMERVQEDYGVTKGEMGIIL
FT                   NGLMVWCIENGTSPNINGTWTMMDGDEQVAYPLRSIVEHAKPTLRQIMAHFSALAEAYI
FT                   EMRNSEQAYMPRYGLQRNLTDMGLARYAFDFYEVTSRTPVRAREAHARMKAAALRNSRP
FT                   RLFGLDGNVTTTDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..618
FT                   /product="polymerase"
FT   mat_peptide     619..1485
FT                   /product="coat protein"
FT   3'UTR           1489..2099
XX
SQ   Sequence 2099 BP; 668 A; 400 C; 492 G; 539 T; 0 other;
     aataatagtg ggcagccatc cacagttgtt gacaattcat taatggtcgt cttttcaatg        60
     tactatgcaa tggaaatgag caacgttagt agcatccacg ataaatgtgt tttcttcgtg       120
     aacggtgatg atttaattat agcagttgaa ccaggctctg aaacattcct tgatagcttg       180
     caaaatctct tccatcaact tggcttaaat tacaactttg acaatcgaac gcgcaataag       240
     gaagagttgt gtttcatgtc acacatgggt attttacaag aagacatata tataccaaaa       300
     ctggataagg agcgcatagt gtcaatattg gagtgggatc gcgctcagca gcctgagcat       360
     agattggaag ctctatgcgc agccatgatt gaagcttggg gatatccgga attgctagat       420
     cgaatccgaa agttctatta ttgggttctt gaacaagcac cgtataatga gttgagtgca       480
     ttaggtaaag cgccatttat ctctgaagca gccctgcgga atttatacac cgattgtgag       540
     gcaacggaag cggagttagc acgatatctc gaactgtacg acagcgatac acctgtagaa       600
     gacacatttg tgttccaagc taatgatgaa ttagatgcag gcatgcaaac aagtaagaaa       660
     cagaaggatg gtaatgataa atctattgaa caacgcgatc caacatcatc acaagttagt       720
     tcactaggca agaaagacgg tgaaggcagt tcaggaacga gtagaaacaa agacagggat       780
     gtgaacattg gcacaacagg gacttttagt gttccacgaa tcaaacagat accacagaaa       840
     ggtatttcga taccaatgga cggaggaaag tcaatactca acttagatca cttactacag       900
     tataaaccaa atcaattgaa tatatcgaac acaagagcca cagtggcaca atttaaaacc       960
     tggatggaga gagtgcaaga ggattacggt gtcactaaag gtgaaatggg cataattctg      1020
     aatggtttga tggtgtggtg catcgaaaat ggaacctcac caaatataaa tgggacttgg      1080
     actatgatgg atggcgatga gcaagtcgcg taccctttac ggtcgatcgt tgaacatgcg      1140
     aaaccaacct tacggcaaat aatggcgcat ttttcagcac tcgcggaggc gtacattgaa      1200
     atgagaaatt cagagcaggc ttatatgcca agatatgggc tacaaagaaa tcttacagac      1260
     atgggcctcg cacgatatgc atttgatttt tatgaagtca catcaagaac accagttaga      1320
     gcgcgcgagg ctcacgcacg aatgaaagca gcggccctac gtaattcaag gccaaggctg      1380
     tttggactag acggtaacgt cacaaccacg gatgaggaca cggagaggca cacagcacat      1440
     gacgtgaatg cacggatgca ccatcttgat ggtgcgcata tgcagtgatg tttcggttag      1500
     taaccggtta tgggcttcca tttaaaaagt cccgagtgcc aaacttgtat tttggctagt      1560
     gtagtgaaac tatgattcac tcgttcaagg cagtttctac tctaaggatg acttgggaat      1620
     tagtagctcc caatgccggt cacggtggtg gccaccaaga gtcaacactt ggtttgaagt      1680
     tgattgtctg aagatctatc cggagtacgg ttttgtaaag aaggtggatt caatttttaa      1740
     ggatagtaag tctgaagcct tattggtgta taagcagcct gaattctgat accccacctt      1800
     taccctacaa tggagtgcta ctttaaagac tagctaggat tgagaccgaa atctcacata      1860
     ctggcatggc cagtagttga tcacttaatg atcaggtgac tactttacag tcaagttgga      1920
     acccgtagta tcctatcctt acctaatatc gtaagtttta tttactggtg tagcgtggtt      1980
     caaccacctt ataaacactt tgaatattag gatcgagctg ttcgtctgaa ggcactaaga      2040
     gtggtttgac catgcgtgcg ttcttacgtt gcagtaaaaa aaaaaaaaaa aaaaaaaaa       2099
//