ID AY842134; SV 2; linear; genomic RNA; STD; VRL; 2085 BP. XX AC AY842134; XX DT 27-DEC-2004 (Rel. 82, Created) DT 16-FEB-2006 (Rel. 86, Last updated, Version 4) XX DE Leek yellow stripe virus isolate pLYSVg1 polyprotein gene, partial cds. XX KW . XX OS Leek yellow stripe virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2085 RA Wei T., Pearson M.; RT "Molecular confirmation of Garlic yellow streak virus as Leek yellow stripe RT virus"; RL Unpublished. XX RN [2] RP 1-2085 RA Wei T., Pearson M.; RT ; RL Submitted (29-NOV-2004) to the INSDC. RL School of Biological Sciences, The University of Auckland, Private Bag RL 92019, Auckland, New Zealand XX RN [3] RC Sequence update by submitter RP 1-2085 RA Wei T., Pearson M.; RT ; RL Submitted (13-FEB-2006) to the INSDC. RL School of Biological Sciences, The University of Auckland, Private Bag RL 92019, Auckland, New Zealand XX DR MD5; 0c7b53824dcc442ca76b1c6a6bfbe2c2. XX CC On Feb 13, 2006 this sequence version replaced gi:56785931. XX FH Key Location/Qualifiers FH FT source 1..2085 FT /organism="Leek yellow stripe virus" FT /host="Garlic plant" FT /strain="Garlic yellow streak virus" FT /isolate="pLYSVg1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /db_xref="taxon:42004" FT CDS <1..1482 FT /codon_start=1 FT /product="polyprotein" FT /note="contains NIb and coat protein" FT /db_xref="GOA:Q5MAU6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5MAU6" FT /protein_id="AAW29096.2" FT /translation="GNNSGQPSTVVDNSLMVVFSMYYAMEMSTMENIYDKCVFFVNGDD FT LIIAVEPGSEAFLDSLQALFHQLGLNYNFNSRTRDKEKLCFMSHMGLLQDGVYIPKLDK FT ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILDQAPYSELSTLG FT KAPFISEAALRNLYTDCEATEAELARYLELYDSDVHIEETFEYQAGEELDAGMSANKNH FT KSSADKANEQRGSLTSQTGNQTGVGSSELSTNKDRDVNVGTTGTFSVPRIKQIPQKGMA FT IPMEGGKSLLNLDHLIQYKPSQLCISNTRATRVQFNNWMERVQEEYGVTKSEMSIILNG FT LMVWCIENGTSPNINGAWTMMDGDEQVEYPLRPIVEHAKPTLRQIMAHFSALAEAYIEM FT RNSEQAYMPRYGLQRNLTDMGLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRL FT FGLDGNVTTTDEDTERHTAHDVNARMHHLDGAHMQ" FT mat_peptide <1..630 FT /product="polymerase" FT mat_peptide 631..1479 FT /product="coat protein" FT 3'UTR 1483..2085 XX SQ Sequence 2085 BP; 646 A; 407 C; 501 G; 531 T; 0 other; gggaataata gcgggcaacc atccactgta gttgacaatt cattgatggt tgttttctcg 60 atgtactacg ccatggagat gagcactatg gaaaacattt acgataagtg tgttttcttt 120 gttaatggtg atgatttaat catagcggtg gaaccaggtt ctgaagcgtt tcttgatagc 180 ttacaggctt tatttcacca gcttggtctt aactacaatt tcaacagtcg aacgcgtgat 240 aaagagaagt tgtgcttcat gtcgcatatg ggcctgctac aagacggtgt ttacataccg 300 aagttagata aagaacgcat agtgtccata ttagaatggg atcgtgctca acaacccgag 360 cataggttgg aagccatttg cgcagctatg attgaagcat ggggctaccc agatcttctg 420 gatcgaattc gaaagtttta ctgttggatc cttgaccaag caccatatag tgaattaagc 480 acattgggca aagcgccatt catctctgag gcagcgttac gcaacttgta tactgattgt 540 gaagctacag aagcggagct agcaaggtac ctcgaactct atgatagtga tgtgcacata 600 gaggaaacat tcgagtacca agctggcgag gaattagatg cgggaatgtc agcaaacaag 660 aaccataaaa gtagcgcaga taaggccaac gagcaacgag gttcattaac gtcacaaact 720 ggaaatcaaa ccggtgtggg aagttcggaa ttgagcacaa ataaagacag ggatgtgaat 780 gttggtacca caggaacctt cagtgtgcca cgaataaaac aaataccaca aaaaggaatg 840 gcaattccca tggaaggggg aaagtcgtta ctcaacttag atcacctgat acaatataaa 900 ccaagtcagt tgtgcatatc aaacactaga gcgacgcgag tgcaattcaa taattggatg 960 gaaagagtac aggaggaata tggtgttaca aagagtgaaa tgagcatcat tttgaacggt 1020 ctaatggttt ggtgcattga aaacggaacg tcaccaaaca taaacggagc atggacgatg 1080 atggacggcg atgagcaggt tgaatatcct ctacgaccta tagttgagca cgcaaaacca 1140 actctacgcc aaataatggc gcatttttca gcacttgctg aagcttatat tgagatgagg 1200 aattcagaac aagcttacat gccaagatat ggcctacaaa gaaacttaac agacatgggt 1260 ctcgcacgct acgcatttga cttttatgaa gtcacgtcaa gaacaccagt tagagcgcgc 1320 gaggctcacg cacaaatgaa agcagcggcc ctacgtaatt caaggccaag gctgtttgga 1380 ctagacggta acgtcacgac cacggatgag gacacggaga ggcacacagc acatgacgtg 1440 aatgcacgga tgcaccatct tgatggtgcg catatgcagt gatgtttcgg ttagtaaccg 1500 gttatgggct tccatttaaa aagtcccgag tgccaaactt gtattttggc tagtgtagtg 1560 aaactatgat tcactcgttc aaggcagttt ctactctaag gatgacttgg gaattagtag 1620 ctcccaatgc cggtcacggt ggtggccacc aagagtcaac acttggtttg aagttgattg 1680 tctgaagatc tatccggagt acggttttgt aaagaaggtg gattcaattt ttaaggatag 1740 taagtctgaa gccttattgg tgtataagca gcctgaattc tgatacccca cctttaccct 1800 acaatggagt gctactttaa agactagcta ggattgagac cgaaatctca catactggca 1860 tggccagtag ttgatcactt aatgatcagg tgactacttt acagtcaagt tggaacccgt 1920 agtatcctat ccttacctaa tatcgtaagt tttatttact ggtgtagcgt ggttcaacca 1980 ccttataaac actttgaata ttaggatcga gctgttcgtc tgaaggcact aagagtggtt 2040 tgaccatgcg tgcgttctta cgttgcagta aaaaaaaaaa aaaaa 2085 //