ID   AY836523; SV 1; linear; genomic RNA; STD; VRL; 1795 BP.
XX
AC   AY836523;
XX
DT   01-JUN-2005 (Rel. 84, Created)
DT   01-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus strain E polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1795
RA   Annamalai M., Baker C.A.;
RT   "Sugarcane mosaic virus strain E polyprotein RNA";
RL   Unpublished.
XX
RN   [2]
RP   1-1795
RA   Annamalai M., Baker C.A.;
RT   ;
RL   Submitted (20-NOV-2004) to the INSDC.
RL   Bureau of Entomology, Nematology and Plant Pathology, Florida Department of
RL   Agriculture and Consumer Services, Division of Plant Industry, 1911, SW
RL   34th Street, Gainesville, FL 32614, USA
XX
DR   MD5; b166a6559597ffa242294763080e88b7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1795
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="sugarcane"
FT                   /lab_host="maize"
FT                   /strain="E"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /clone="pMA9"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1564
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q4VM06"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q4VM06"
FT                   /protein_id="AAX35329.1"
FT                   /translation="STVVDNTLMVILAFNYAMLSSGIQDNEIDNCCKMFANGDDLLLAV
FT                   HPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTQGLKYEGIYIPKLEKERIVA
FT                   ILEWDRSNLPEHRLEAICAAMVEAWGYSDLIHEIRKFYAWLLEMQPFANLAKEGLAPYI
FT                   AETALRNLYLGSGIKEEEIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVDAGAQGGGGNA
FT                   GTQPPATGAAAQGGAQPPATGAAAQPPATQGSQPPTGGVTGGGGAQTGAGGNGSVTGGQ
FT                   KDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATRE
FT                   EFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGSWTMMDGDEQRAFPLKP
FT                   VIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMT
FT                   SRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQ
FT                   QHH"
FT   mat_peptide     1..622
FT                   /product="nuclear inclusion II protein"
FT   mat_peptide     623..1561
FT                   /product="coat protein"
FT   3'UTR           1565..1795
XX
SQ   Sequence 1795 BP; 571 A; 373 C; 440 G; 411 T; 0 other;
     atcaactgta gtcgacaaca cgctaatggt tatcttagca ttcaattatg caatgttatc        60
     aagtggaata caagacaatg aaatcgacaa ctgttgcaaa atgttcgcca atggagacga       120
     tttactgttg gcagtacatc ccgattatga acatatactg gacggatttc agacccactt       180
     tggaaacctt ggtttaaatt ttgaattcaa ttcacgaacg agggaaaaat cgaacttgtg       240
     gttcatgtcg acacagggac tcaagtatga aggcatttac ataccaaaac tcgaaaagga       300
     aagaatagtc gccatactcg agtgggatcg ttcaaatcta cccgagcacc gtttagaagc       360
     catttgtgca gcaatggtcg aagcgtgggg ctattcagat ctcatacatg aaattcggaa       420
     attttatgca tggcttctgg aaatgcaacc atttgcaaat ttagccaaag agggtctagc       480
     tccatatatt gcagaaacag cgcttcgtaa cttgtatcta ggttcgggga ttaaggaaga       540
     ggaaattgaa aaatacttca agcagtttgc aaaggacctc cctgggtatt tagaggatta       600
     caacgaagaa gtttttcacc aagctggaac agtcgatgca ggcgctcaag gaggaggtgg       660
     aaacgctgga actcagccgc cagccactgg agcagcagct caaggaggag ctcaaccacc       720
     agcaactgga gcagctgcac aaccacccgc aactcaaggt tcacaaccgc ccacaggggg       780
     agttactggt ggaggtggtg cacaaacagg agctggtgga aatggttcag ttacaggagg       840
     tcagaaagac aaggatgtag atgctggtac gacaggcaaa atcacagtgc caaaacttaa       900
     agccatgtcg aagaagatgc gcttgccaaa agcaaaagga aaggacgttt tgcatctgga       960
     ctttctgtta acatacaaac cgcaacaaca agacatatca aacacaagag caaccagaga      1020
     ggagtttgat aggtggtatg aagctataaa gaaggaatat gaaatagatg acacacaaat      1080
     gacagttgtc atgagtggtc taatggtatg gtgtattgag aatggttgct caccaaacat      1140
     aaacggaagt tggacaatga tggatggaga tgaacaaaga gccttcccat taaaaccagt      1200
     tattgaaaac gcatctccaa cattccggca aataatgcat catttcagtg atgcagctga      1260
     agcatatatc gagtatagaa actctacaga gcgatacatg ccacgatatg ggcttcagcg      1320
     aaatctcacc gactatagct tagcgcggta tgcatttgac ttttacgaaa tgacctcaag      1380
     gacaccagct agagctaaag aagcccacat gcagatgaag gccgcagcag tccgtggttc      1440
     aaacacacga ttgttcggtc tggacggaaa tgtcggcgag acccaggaga atacagagag      1500
     acacacagct ggcgatgtca gtcgcaacat gcactctctg ttgggagtgc agcagcacca      1560
     ctagtctcct ggaaaccctg tttgcagtac ctatagtatg tactaataat gtatatcagt      1620
     gaggttctac ctcgtcttca ctatattatg tatgtactta aagcgtgaac cagtctgcag      1680
     gacacagggt tggacccagt gtcttctggt gtaacgtgta ctagcgtcga gccacgtgac      1740
     ggacagcact gagtgtggct ttgccattag tgctgcgagt ctcttggtga gagac           1795
//