ID AY830918; SV 1; linear; genomic RNA; STD; VRL; 4731 BP. XX AC AY830918; XX DT 30-MAY-2005 (Rel. 84, Created) DT 22-JUN-2006 (Rel. 88, Last updated, Version 3) XX DE Grapevine Algerian latent virus strain nipplefruit 92K protein, 33K DE protein, 40k protein, 24k protein, and 19k protein genes, complete cds. XX KW . XX OS Grapevine Algerian latent virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4731 RA Ohki T., Uematsu K., Nakayama Y., Lesemann D.-E., Honda Y., Tsuda S., RA Fujisawa I.; RT "Characterization of Grapevine Algerian latent virus isolated from RT nipplefruit (Solanum mammosum) in Japan"; RL J. Gen. Plant Pathol. 72(2):119-122(2006). XX RN [2] RP 1-4731 RA Ohki T.; RT ; RL Submitted (18-NOV-2004) to the INSDC. RL Department of Plant Pathology, National Agricultural Research Center, 3-1-1 RL Kna-nondai, Tukuba, Ibaraki 305-8666, Japan XX DR MD5; 3c7c092b8ef9a8e9fd278b422751fd0d. DR EuropePMC; PMC3234231; 22174683. DR EuropePMC; PMC4289286; 25367743. DR EuropePMC; PMC4752228; 26871901. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4731 FT /organism="Grapevine Algerian latent virus" FT /strain="nipplefruit" FT /mol_type="genomic RNA" FT /db_xref="taxon:208084" FT CDS 167..2623 FT /codon_start=1 FT /transl_except=(pos:1055..1057,aa:OTHER) FT /product="92K protein" FT /note="RNA-depentent RNA polymerase; readthrough stop FT codon" FT /db_xref="GOA:Q4VMI6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q4VMI6" FT /protein_id="AAX76898.1" FT /translation="METIRRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFLVELLKTDCAAKWEWFMKRRQRGDYIVPLSIAALPVIPLLSYATKV FT RAVSVKAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTAK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSVEALQYEHSFYRAMYPGNKLLGKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQRTLPEYFLNLGFTMKVEAPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVETFYSRFKLYDTPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWDMDLFGEEGTDAHEPSI FT LDSAVA" FT CDS 167..1057 FT /codon_start=1 FT /product="33K protein" FT /note="putative RNA-dependent RNA-polymerase" FT /db_xref="GOA:Q4VMI5" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q4VMI5" FT /protein_id="AAX76899.1" FT /translation="METIRRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFLVELLKTDCAAKWEWFMKRRQRGDYIVPLSIAALPVIPLLSYATKV FT RAVSVKAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2638..3768 FT /codon_start=1 FT /product="40K protein" FT /note="capsid protein" FT /db_xref="GOA:Q4VMI4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q4VMI4" FT /protein_id="AAX76897.1" FT /translation="MALALNTRRNNNGKVMEMLAYKAATAGAELALANVGGITRGVAQL FT GKSMMGKKKRNKNVSQVGALGGAVVAPVAVTRQIRGSKPRFSGRGTGSITVTHREYLGQ FT VVTTADLQVNGGITGNLLKVNPLNGILFSWLPTIAAGYDQYAFNRLSLQYVPLCATTAT FT GRVAMYWDKDSTDLEPTDRVELANQAILKETSPWAEANLTIPTDRIKRFCDDSAVADRK FT LVDLGQLGVATYGGTAVVAGDVFVSYTVTFYNPQPLATLMDTTRINASNTVITNVGPQY FT SRIDVVSGNQWLITFRGVGKFVIFGSIRGTGAVVLALSGVIVNSSTTLTTPTGAMYVAN FT VTVSSLPASLSYTMTTVTAGLHSAVRATRANDMGTP" FT CDS 3749..4381 FT /codon_start=1 FT /product="24K protein" FT /note="movement protein" FT /db_xref="GOA:Q4VMI3" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q4VMI3" FT /protein_id="AAX76896.1" FT /translation="MIWAHLSACQARKGLLEQDQFMDTEYEQVNKPWNELYKEATLGNK FT LTVNVGMEDAEVPLLPSNFLTKVRVSMSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRD FT ISDTTGRKLHCTELLDLGREVRLTMQHLDFLVSARSDVPIVFGFEDLVSPYLEGRELFS FT VSLKWQFGLSAQCYSLPPAKWKVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3844..4362 FT /codon_start=1 FT /product="19K protein" FT /db_xref="GOA:Q4VMI2" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:Q4VMI2" FT /protein_id="AAX76895.1" FT /translation="MERTIQGSDVREQANSERWDGGCGSTITPFKLPDESPSLYEWRLH FT NSEESEDKDHPLGFKESWCFGKVVFKRYLRYDGTEASLHRALGSWERSSVNDAASRFLG FT LGQIGCTYSIRFRGSCLTLSGGSRTLQRLIEMAIRTKCTMLQLAPCEVESDVSRRCPEG FT TEAFEKESE" XX SQ Sequence 4731 BP; 1243 A; 1002 C; 1319 G; 1167 T; 0 other; agaaattccc caggatttca cgacctagtt cgttgttatc tggtgacttg cgctaccgtt 60 gctttgcgta gggaatttct ctccatagtt taactttgac tgtggggttt gaaggttggg 120 tctacccttc ggggggataa attgtaactt ccaacaaaca agcgacatgg agaccatcag 180 gagaatgatt tggcctaaga aagagatttt tgtgggtgat ttcgcgatcg gagttaatag 240 gacggcaccg gtggacattt tccagttggt gtgccgtgta gtcctgagat acatgaggac 300 agggaaaata gagtgtgatt ctgatagcat gacgaagttt ctagttgaac tacttaaaac 360 tgattgtgct gccaaatggg agtggttcat gaagagacgg cagaggggtg attatattgt 420 ccctctttct atagccgccc tcccggtcat accgctgttg agttatgcca cgaaggtacg 480 tgcagtctca gtcaaagcgt tcggtaatga gctgtcgttc aatatccgag tgcctagacc 540 atctgtgccc aagaaaggat tactcctcag actggcggca ggcttagcgc tcgcacctat 600 atgcgcgcta gcagtgtacg ctacccttcc ccgggaaaaa ctgtcggtat tcaagcttag 660 gactgaagca cgcgcacaca tggaggatga gagagaagcg acagattgtt tggtggttga 720 gccggcacgg gagctcaagg gtaaggatgg tgaggatctc ctcactggta gtagaatgac 780 taaggtaatc gcgtccacgg ggcgccctcg caggaggcct tacgcagcaa agattgcaca 840 ggtcgcgaga gcaaaggtgg gttacctaaa gaatagtcct gaaaatagat tgatctacca 900 gcgagtgatg attgagatca tggacaaaga ctgcgtcagg tatgttgaca gggatgtcat 960 attgccattg gctattggat gctgttttgt ctatccggat ggagtggagg agtcggcagc 1020 actatggggt tcgcaggaat cccttggtgt caaataggga ggcctagtac gtctacctgg 1080 ggttgtgaca cagatcaatc gagatatccc atctgatgtg ttgctccccc aggaggtgct 1140 agaggttcgt acaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgcaggttg 1200 cccatcacag gcgcggttct tagtacacaa tcattgcctg aaaaacctca aaaggggtct 1260 tgtggagaga gttttctgtg ttgagagaaa tggaaagctc gctcgcactc cacaacctac 1320 caaaggagcc tttggacgtc tttccccgtt caggaaagca gtttgtgaga aggttggagt 1380 agcccaccga cttgggtatg atggatttct gtcgtactac agcggtgcga agctccgtac 1440 ttacacacga gctgtggaga gtctgcatat cactcctgtc tcagagaggg atagtcatct 1500 gactaccttc gtaaaggcag agaagatatc gacggctaaa ggtgacccag cgcctagggt 1560 aattcagcct cgaaacccta ggtacaatgt ggaacttgga agatatctgc ggcatatgga 1620 atccaagctg atgaaagctg tagatggcgt gttcggagag acgacatgca tcaaaggata 1680 caccgctgat gaggtgggcg ctattttcag agagaaatgg gacaggtttg ataagcctgt 1740 tgccataggt cttgatgcgt ccaggtttga tcaacactgt tccgtggaag ctttgcaata 1800 tgagcatagt ttctacaggg ccatgtaccc tggcaacaag ctcttgggca agttgttgga 1860 gtggcagctc cataataaag ggaaggggta tgttcctgat ggaactatca cctatcgtaa 1920 ggaaggctgt cgtatgagtg gggatataaa cacctcgttg gggaattacc tattgatgtg 1980 tgcaatggta cacgggtaca tgcgccattt ggggattaat gaatttagtc tggcgaactg 2040 tggggatgac tgcgttctaa tcttggaacg tagaaatctc aaacaggtac agaggactct 2100 acctgagtat ttcctaaacc tgggatttac catgaaggtg gaggcccctg tatttcaatt 2160 ggaagaggtt gaattctgcc aggcacaccc tgtacagttt caaggtggtt ggaagatggt 2220 ccggaacgtt cgcactgcca tgagcaaaga cgtgcactgt gttaataata tacgcgatct 2280 tgcgacgagg agagcatgga gtaatgccca gcatcatgga ggactggcgc ttagtgccgg 2340 tatacccgtg gttgagacat tttactccag atttaagtta tatgacacac ctcgcaaaca 2400 tcaacgtatt gacacggtca caaatgttca taaatggcgc ggatccggtg ggagctatgt 2460 tgtgacccct gagtctaggg ctagcttttg ggcagccttt ggtctcacgg gggatgagca 2520 actagctttg gaggaccgtc tggataggtg ggatatggat ctgtttgggg aagagggtac 2580 tgatgcgcat gagcccagta tccttgactc cgccgtagct tgaccaagta aacacaaatg 2640 gcattagcac taaacacaag acggaacaac aacggtaagg tgatggaaat gttagcatat 2700 aaagcggcca cggccggcgc tgagttggct ctcgccaatg tcggtggcat aacccgtggt 2760 gtggcacaat tgggtaagag tatgatggga aagaaaaaga ggaacaagaa cgtatcccaa 2820 gtgggtgcat taggtggggc agttgtagcc cctgtggcgg ttaccagaca aatacgtggg 2880 tctaaaccca ggttttccgg caggggaact ggtagcatta ctgttacgca tagagaatac 2940 ttgggccagg tagtcacgac ggctgaccta caagtgaacg gaggcattac gggcaaccta 3000 ctgaaggtaa atccattgaa tggaatactc ttctcttggt taccaactat tgcagccggt 3060 tatgaccagt atgccttcaa taggctatca ttgcagtatg tacctttgtg tgcaactaca 3120 gcgactggtc gtgtagcgat gtattgggat aaggattcca cggatctgga acccactgat 3180 cgagtcgaac tggccaatca agcaatcttg aaagagacgt cgccatgggc agaagcaaac 3240 ttaactatac ccactgatcg catcaagaga ttctgcgatg atagtgcggt cgcagaccgc 3300 aaacttgttg atctcggaca acttggagtg gctacatatg gggggacagc ggtggttgcc 3360 ggggatgtgt ttgtcagtta cactgtcaca ttctataatc cacagcctct ggccaccctc 3420 atggacacca cgcgtatcaa cgcctcaaac accgtaatca ctaatgtggg gccacagtat 3480 tcacggatcg atgtagtgtc aggcaatcaa tggctgataa cctttcgggg tgtcggcaag 3540 tttgtcatat tcggtagcat acgtggcact ggggctgtcg ttttggccct aagtggagtt 3600 attgtcaact cctccactac ccttaccaca cccacgggag caatgtatgt ggctaacgtg 3660 accgtatcat cattaccggc aagcttatca tacaccatga ccactgtaac agctggatta 3720 cattcggccg tccgtgcgac aagggcaaat gatatgggca caccttagtg catgccaagc 3780 aagaaagggg cttcttgaac aagaccagtt catggatact gaatacgaac aagtcaataa 3840 accatggaac gaactataca aggaagcgac gttagggaac aagctaacag tgaacgttgg 3900 gatggaggat gcggaagtac cattactccc ttcaaacttc ctgacgaaag tccgagtctc 3960 tatgagtgga ggctacataa cagtgaggag agtgaggata aagatcatcc ccttggtttc 4020 aaggaaagct ggtgtttcgg gaaagttgta tttaagagat atctcagata cgacgggacg 4080 gaagcttcat tgcacagagc tcttggatct tgggagagaa gttcggttaa cgatgcagca 4140 tctagatttc ttggtctcgg ccagatcgga tgtacctata gtattcggtt tcgaggatct 4200 tgtctcacct tatctggagg gtcgcgaact cttcagcgtc tcattgaaat ggcaattcgg 4260 actaagtgca caatgttaca gcttgccccc tgcgaagtgg aaagtgatgt atcaagaaga 4320 tgccctgaag gcactgaagc cttcgaaaaa gaaagcgagt aagacagact cttcagtctg 4380 agttggtgga tgtgagtgta ctttgtttga gcatacaggt tactcttagt atgattaggt 4440 ctacgtgatg acgagtcagg tcaggctccg cactgggttt ggtcgcccag gggatggaga 4500 cacggaaagg acatcgtgtg ctataagtct gacgtaagtc gagcttgcaa catgggtcta 4560 tgcctggata agtcacgtgg ttgcccctac tatgaattgg atgcctgttt acgactagca 4620 aacgacactc gtggaaacta atttggacac ggttgatctc acccttcggg ggggctatag 4680 agatcgctgg aagcactacc ggacaaccgg aacattgcag aaatgcagcc c 4731 //