ID AY800279; SV 1; linear; genomic RNA; STD; VRL; 6066 BP. XX AC AY800279; XX DT 01-JUL-2005 (Rel. 84, Created) DT 23-DEC-2005 (Rel. 86, Last updated, Version 2) XX DE Nandina mosaic virus isolate PLH 1, complete genome. XX KW . XX OS Nandina mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6066 RA Hughes P.L., Harper F., Zimmerman M.T., Scott S.W.; RT "Nandina mosaic virus is an isolate of Plantago asiatica mosaic virus"; RL J. Plant Pathol. 113:309-313(2005). XX RN [2] RP 1-6066 RA Hughes P.L., Harper F., Zimmerman M.T., Scott S.W.; RT ; RL Submitted (28-OCT-2004) to the INSDC. RL Entomology, Soils, and Plant Sciences, Clemson University, Long Hall, RL Clemson, SC 29634-0315, USA XX DR MD5; e94e924bd86554c4b7c86c7856d3e4c5. DR EuropePMC; PMC5394712; 28466044. XX FH Key Location/Qualifiers FH FT source 1..6066 FT /organism="Nandina mosaic virus" FT /isolate="PLH 1" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:315713" FT CDS 86..4192 FT /codon_start=1 FT /product="viral replicase" FT /db_xref="GOA:Q4KU38" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q4KU38" FT /protein_id="AAX19931.1" FT /translation="MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSP FT DAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRY FT FHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALF FT AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQL FT EWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFL FT PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN FT YFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPI FT TLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEML FT ENSTESDVTHTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNHTHTSSDLLRRR FT HPRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDS FT PQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTD FT NAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ FT FRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEE FT ALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHL FT LVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSN FT HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEEC FT TTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARL FT TISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKS FT LNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT FT MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAML FT QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHT FT RFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYL FT ITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSP FT RQAHLHQVTVRDLVKFGGSPFLNSD" FT CDS 4194..4886 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:Q4KU37" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q4KU37" FT /protein_id="AAX19932.1" FT /translation="MDAIISTLTSNDFQRTNIPISKPLVVHAVAGAGKTTLIQNLLSEH FT PNFSAQTAGTPQSPNLTGAFIRKLTCPESNKINLLDEYAALQPLKGSWDVVLADPLQHT FT GLTLRPHFIKSVSHRLCPETTKLISKLICPCTSSRAETSTIQFSGLFDGPLLGTIIALD FT QTTQALLQAHNAPFLCPSAALGLEFDTVTVVSSQPLEEVSDQVGLYISLSRHRSQLYVR FT SPPPHPTY" FT CDS 4852..5184 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:Q4KU36" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q4KU36" FT /protein_id="AAX19933.1" FT /translation="MSGVHHLTPPTDYGKPVLAASIGISLALLVYTATRSTLPHVGDNL FT HALPHGGRYVDGTKSISYFSPNSSTRRDPFPYAFLLVFTLSGLILLLSRCRRPTANCPC FT CGRLHA" FT CDS 4988..5353 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:Q4KU35" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q4KU35" FT /protein_id="AAX19934.1" FT /translation="MPFRTEAATSTEPNPSATSAPTAPHAGTHSLTPSCSSSPSPDSSY FT YFLAAAVLLLTALAVAAFTPKSGCTIIITGHTTTIQGQCSTPPQLVLAAHPKGLSLELY FT SKFNELTGHGPHRSPNH" FT CDS 5325..5948 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q4KU34" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q4KU34" FT /protein_id="AAX19935.1" FT /translation="MALTAAPTTDALAAMTFQVSSPSVPTASELNTITQGLTTIGVPTD FT GLLSHALAVVNACFDAGSSTFVTLSGPSPTATISLAQIAGVIKVTTTLRKFCRFYAKII FT WNARLARNLPPAGFARANIKFEHRWAGFDFFDGLLNPAALEPLGGLSRTPTPDEVTANE FT TARSLNLFEARANSSNLASTSTQFTRGQLSSTAPQVQFLPAPSD" XX SQ Sequence 6066 BP; 1566 A; 2141 C; 1201 G; 1158 T; 0 other; gaaaacaaac atacacgaac cgaacgtcaa caaacataca cggccctaaa aggtaaccga 60 cttgctcaaa agctaggtta acggtatgtc taacgttcgg aacgttttct cgcaactcac 120 cgacccctcc ctcaaggccg tcattcaaga cgaggcctac cggactctca aacgggagct 180 tgcacaaaca cgccacacaa acccctttgc ccaatccccc gatgctgccg acgctctaga 240 agccttgggc atcaattccc acccctacgc cataacaccc cacacccacg ccgcagcgaa 300 ggccatagag tctgacctgt acgaagtagt ctcccactac ctccctaaag agaatcccgt 360 ctccttcctc tttatgaaac cagctaaact aagatacttc caccgaggcc ccacacatgg 420 cgacttcttc ctcaatgcac acgtggagcc caaagatgtc ccaaggtacc ctcaggacac 480 cgtgctgaac aggctggaaa acatttccac atccatcgcg ttcatgggag acaccttgca 540 cttcctcagc ccctcctttg tcaccgccct ctttgctcac tcaccaaaac ttcagacact 600 ctatgcaacc ctagtcctcc ctccggaagc cctctacaga cttcgatccc tctaccccca 660 aatctacaca ctcacgtact ctgaagacgg cttcatgtac atccccggag gccatgccgg 720 cgcgtcgtac ttccacaagt acgaccaact ggaatggctc acgatcggcc acctccaagc 780 acccaaccag cccacagtca cggctcagag actggaaaca aagggtgcta accacctctt 840 catcttccaa cgaggtaact acctcacgcc cgaaagacgc accttcacca ctactgaccc 900 atacgtcacg gttcctgaca tcttcctccc cgagaagtac aactgcagaa ccccgatttc 960 aaaaactata atgatgcaga tgttctttta cataaaatca gtcaaggagg ccaaagaaag 1020 ggacatctgg gcgaagtttc gacaactcat cagcaccaaa gaacttcaac actaccagcc 1080 ctcggagatc accctcctgg tcaactactt tgagttcgcc gcctcccttg actcccacac 1140 atgcttcgaa gacgtcctct caggcaacct gctgcaaaga ctgttgaggc cgcttcgggc 1200 ggacatgcag aggatcctcc actttttcag aggccgaccc tcattcgtca aactcattaa 1260 ggctctggac tggcaaccca tcacgctcga gttccctgtt cgacgtgtca acacacgttt 1320 gcggggaccg cccggcttcc tcagcccttt cacgcgtccc caacccgtga accccgatga 1380 cgctgagaca accgagtctt tccgggagtt tattcaaccc ttgaacccga gccccactgc 1440 caccgtcacc gaaatgcttg aaaactcaac tgaaagtgac gtcacccata cgagcttaaa 1500 agtagtgccc caaagcctct cccctgaaca actctcagca ctacacgagc ttggcaactc 1560 cagatgtggg ggccccatgc tgcccaaaag gagcagcaac cacacacaca ccagctccga 1620 cctcctccgc cgacgccatc cccgtcaaca acgatccaca aaccctccca tgggcagcct 1680 ggctgccaaa gctaaacgca ttgggtttga ggccttggaa atccaaaccg acccctcaac 1740 gggacagccc ataatgccca tcacagacac acgagagctc cccagagcca tcatgcccgc 1800 acactgggac agcccccagt tcgagaagat aatcgccact ctgcgaaacc tcaacagatt 1860 ccccacccct tggagcccag acagagcaag agctagggct ttcacctccg acgtgaagaa 1920 ttcccgaacg ggcaaagctc tccaccgaga gtcccaaact tggaaagaga cccaaaccat 1980 gctcactgac aacgccgaga tccacaccgc aatctctgtc atccacggcg ctggaggctc 2040 cggaaagagc caggccctgc agaccctcct tagacaaaat cctgaccttc ccattgaggt 2100 ggtgctcccc accaacgagt taagactcga ttggctcaag aagttgccgc acaacccccc 2160 cgaacagttc cggacattcg aaagggcttt cgtcagctcc agaggacccg tcgtgatttt 2220 cgatgactac ggcaaacttc cgcagggata cattgaagct ttcgctatga cgcacgccaa 2280 tcttgaactg atcattctaa caggtgaccc gaggcagtca acccaccacg aagcaaacga 2340 ggaggcgctc atctctaagc tcagccccgc caccaccaca ttttccgagc tgtctaggta 2400 ctacatcaat gccacccacc gcaactccaa attcctggcc aacaagcttg gaatttattc 2460 ctccaaccac tgtcccctca aagtcaccta cggatttcaa ccacaaccgg gcctacacct 2520 ccttgtcccc tccctcgtta agaaagccgc attcaccgac gctgggcaca aagtctccac 2580 ctacgcgggc tgtcaaggaa ttactgcccc ccgagtgcaa atactgcttg acaatgacac 2640 caccatgtgt actaaagagg ttctctacac agccctttca cgggcagtcg acagcaatca 2700 cttcgtgaac tcgaacgccc aatccagcgc cttctgggag aaacttgagg ccactccata 2760 cctcaagacc ttcctgagcc tagtccgcga agataaaatt gaggagttct ccgccccccc 2820 cgacccgccc aagtcggtca tgccgcctgt cacccacttc ccggtcgaag agtgcaccac 2880 ggcgcttgac gacttcagag aggagctcca cgacaaattt gaccgagaaa tcttcacaga 2940 ggcccatggg cacactaact gcgtccagac ggacgacccc acaacccagc tcttctccca 3000 ccaacaagct aaggacgaag ccctactctg ggaaaccata aaggccagac tcaccatctc 3060 caccccagag gcaaatatcg aggaattccg cgccaagaaa gacctgggtg atatcctctg 3120 gacaaactac cacaaagcca tgaacctacc aaaggaacaa cccgactttt cagaagagct 3180 ctggaccaga tgtgcggaag aggtccagaa cacctatctg aagaagagtc tcaaccaact 3240 caaaggtgga gagcgcagac agtccccgga tttccacgag catcaaatcc tcatcttcct 3300 aaaatcccag tgggtgaaga aaatggagaa attgggcgcc aagaagatca agcccgggca 3360 aactatagcc tccttccagc agcacgcagt aatgctctat ggcactatgg cccgttacat 3420 gcgaagattt cgtgacgcct tgagccccaa caacattatg atcaattgtg agaaaactcc 3480 ccaagacctt tccaggtggg ttctcagcta ctgggacttc tccaaaccgg cttacgccaa 3540 tgacttcacg gccttcgacc aatcacagga tggcgccatg cttcaattcg aaatactgaa 3600 agccaagtat ttcaacctcc cagagtgggt aatagaagga tatctggaca tcaaactctc 3660 acccaaaatc ttcctcggca cactctccat catgcgcctc accggcgagg gacccacgtt 3720 tgacgcaaac accgagtgca acattgctta cacccacacc cgcttcaaca ttccagaggg 3780 aacggcccaa atctacgctg gggacgactg tgccattgcc caagtgtgtc ctgaaaaacc 3840 ctcctttgcc ctcctgaagg atagaatcgc cctacaagca aagccggcct acacaccaca 3900 agagcgaggc caatgggcgg agttctgcgg ctacctgatc accccaaaag gcctgatcaa 3960 agacccactc aagctccatg cctccctaga actcgccaag gcccagaaga aagcaggagt 4020 caaagatgcc atcaccaacg tggtagccaa ctacagcctc gacgccaaac tcgcatactc 4080 gctcggagat gaacttcatg atctcctttc tcccaggcaa gcacacctcc accaagttac 4140 ggttcgtgac ttagttaagt ttgggggctc acctttcctc aactccgatt aacatggacg 4200 caattatttc aacactgaca tctaacgatt tccagcgaac taacatcccc atctcaaaac 4260 cactagtggt ccacgccgta gccggcgccg gcaaaaccac cctcatccaa aaccttctct 4320 cagaacatcc aaacttttca gcccaaaccg caggaactcc acagtcaccc aacctcacag 4380 gagccttcat tcggaaactc acctgcccag agtccaacaa gatcaacctt cttgacgaat 4440 acgcagcgct ccaaccgctc aagggctctt gggacgttgt cctcgccgac cccctccaac 4500 acacaggcct cactctccgt ccgcacttca ttaagtccgt cagccaccgc ctctgcccag 4560 agaccaccaa gcttatctcc aagctcatct gcccctgcac ttcaagccga gccgaaacgt 4620 ccaccatcca gttttcagga ctgttcgacg gcccactctt aggcacaata atcgcccttg 4680 accagaccac tcaagccctc ctccaggccc acaacgcacc cttcctgtgc ccctccgccg 4740 cattaggcct cgaattcgac acggtcactg tagtctcctc ccaaccccta gaagaagttt 4800 cggaccaggt cggcttgtac ataagccttt cccgccaccg cagccagctt tatgtccgga 4860 gtccaccacc tcaccccacc tactgactac ggcaagcccg tcctcgcggc atctataggg 4920 atctcccttg ccctactcgt ctacaccgcc accaggtcga cactcccaca cgtgggggac 4980 aaccttcatg cccttccgca cggaggccgc tacgtcgacg gaaccaaatc catcagctac 5040 ttcagcccca acagctccac acgcagggac ccattccctt acgccttcct gctcgtcttc 5100 accctctccg gactcatctt actactttct cgctgccgcc gtcctactgc taactgccct 5160 tgctgtggcc gccttcacgc ctaaatccgg gtgcaccatc atcatcaccg gtcatacaac 5220 caccattcaa ggccagtgct ccaccccacc gcagctcgtc ctcgccgccc atcctaaagg 5280 cttaagtttg gagctgtact cgaaatttaa cgaactcacc ggccatggcc ctcaccgcag 5340 ccccaaccac tgacgcttta gccgccatga ctttccaagt ctcctcacct tccgtcccca 5400 cggcttctga actcaacacc atcacgcagg gcctgaccac catcggggtc ccaacggacg 5460 gactcctcag ccacgcactg gccgtggtca acgcctgctt cgacgccggg tcttcaacct 5520 tcgtaaccct cagcggaccc agccccacag ccaccatctc ccttgcacag atcgcggggg 5580 tcatcaaggt caccacgacc ctgaggaagt tctgtaggtt ctacgcaaaa atcatctgga 5640 acgccaggtt ggcccgcaac ctcccacccg ccgggtttgc ccgtgcgaac atcaagtttg 5700 aacatcgctg ggccggtttt gatttcttcg acggacttct caacccagcg gccctcgaac 5760 ctctgggcgg cctctccagg accccaactc ccgacgaggt cacagccaac gagactgcca 5820 gatccctgaa ccttttcgaa gccagggcga acagttcaaa cctcgcctcc acttccacac 5880 aatttacccg cggccaactc tcaagcaccg caccacaggt ccagttcctt cccgcaccct 5940 ccgactagtc tataaccgtg gaaagacttt aaagagtcca cgcatcgcca aacttaatga 6000 gccctaaccc cggtgtgtat tttaccgttt taataagcct acgaccagtg aaaatctggt 6060 gggccc 6066 //