ID AY795983; SV 1; linear; genomic DNA; STD; VRL; 2798 BP. XX AC AY795983; XX DT 24-MAR-2005 (Rel. 83, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 3) XX DE East African cassava mosaic virus segment A, complete sequence. XX KW . XX OS East African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2798 RX DOI; .1186/1743-422X-2-21. RX PUBMED; 15784145. RA Ndunguru J., Legg J.P., Aveling T.A., Thompson G., Fauquet C.M.; RT "Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of RT cassava geminiviruses in Africa and evidence for East Africa being a center RT of diversity of cassava geminiviruses"; RL Virol J 2:21-21(2005). XX RN [2] RP 1-2798 RA Ndunguru J., Fauquet C.M.; RT ; RL Submitted (26-OCT-2004) to the INSDC. RL ILTAB, Donald Danforth Plant Science Center, 975 North Warson Road, St. RL Louis, MO 63132, USA XX DR MD5; 604e0c5d3ac34423ff4e93272086b1dd. DR EuropePMC; PMC1079959; 15784145. DR EuropePMC; PMC2092379; 18052529. DR EuropePMC; PMC3163225; 21812981. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic virus" FT /segment="A" FT /isolate="TZ1" FT /mol_type="genomic DNA" FT /country="Tanzania" FT /db_xref="taxon:62079" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q58WJ9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q58WJ9" FT /protein_id="AAX39340.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIWDL FT IGVLRCESYVEATRRYNNLNTRIQGAEEAELRQPIQEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q58WJ8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q58WJ8" FT /protein_id="AAX39341.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYKNRVVAPTVRVTRSKIWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDQYQVLRKFYATIVGGPSGNKEPSAGKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYEAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:Q58WJ7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q58WJ7" FT /protein_id="AAX39345.1" FT /translation="MDLRTGELITAPQAQNGAFIWEIPNPLYFKIINHNSRPFNMHHDI FT IDVQIRFNHNLRRALGMHKCFLNFRIWTRLHPQTWRFFKPFRTQVMKYLDNLGVISIST FT VIDAVHHVLNIVFVGTIYVSQDHEIKFNIY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:Q58WJ6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q58WJ6" FT /protein_id="AAX39344.1" FT /translation="MRSSSPSQSHSSPPPIKARHRQAKIRAPRRRRIDLSCGCSIYRSI FT NCHNHGFTHRGTHHCSSSAEWRIYMGDTKSPIFQNHQPQQQAVQHAPRHHRCPDSVQPQ FT PEESTGDAQVFSQLPDLDSFTSSDLAFLQTL" FT gene complement(1586..2644) FT /gene="AC1" FT CDS complement(1586..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:Q58WJ5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q58WJ5" FT /protein_id="AAX39342.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKTLSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLSSPFRSSQFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKPEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEEIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEYLDEDKNSNLKNWAIKNALFISLTEPL FT FSSSDQSQAQAS" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q58WJ4" FT /protein_id="AAX39343.1" FT /translation="MGCPISMFSSNSKASSNVLTRDSSISVPHSDHHSSIRTFRELNHR FT PMSKLTLKREGSFLTMEFSKSMPGVHGGRASI" XX SQ Sequence 2798 BP; 744 A; 554 C; 703 G; 797 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccatct gatgaccgcg cccgtgaaag 60 aaagtggtcc ccgcgcactt gtttctgtcg gccagttata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gctaagtagt taagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cctgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatcttgaa caggaatacg atcgcggtac tgtcggggct gagtatatat 300 gggatctaat aggggttcta cggtgtgaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacaagaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaggatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ttatgaacag agggatgatg tgaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtggg taagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggccgta tgggccgagc 780 ccgcaagatt ttggacaagt gttcaacatg ttcgataatg aacctactac tgcaacggta 840 aagaatgatc ttagggacca gtatcaggtg ttacgtaaat tctatgcgac tattgttggt 900 ggaccctccg ggaataagga accaagcgct ggtaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaaa tatgagaatc atacggagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcttcaaat cctgtgtacg ctactctgaa aatacgcatc 1080 tatttctatg aagcagtgac aaattaataa atattaaatt ttatttcatg atcttgtgat 1140 acatatatgg tgcccacaaa aactatattc aatacatgat gcactgcatc tattacagtt 1200 gaaatcgaaa taacacctaa attatcgaga tacttcatga cttgtgtcct aaagggtttg 1260 aagaaacgcc aagtctgagg atgtaaacga gtccagatcc ggaagttgag aaaacacttg 1320 tgcatcccca gtgctctcct caggttgtgg ttgaaccgaa tctggacatc tatgatgtcg 1380 tggtgcatgt tgaacggcct gctgttgtgg ttgatgattt tgaaatatag gggatttggt 1440 atctcccata taaatgcgcc attctgcgct tgaggagcag tgatgagttc ccctgtgcgt 1500 aaatccatgg ttgtgacaat ttatgctgcg atagatggaa cagccacaag ataggtcgat 1560 tcgtcgacgt ctgggtgctc tgatcttagc ttgcctgtgc ctggctttga tcggaggagg 1620 agaagagtgg ctctgtgagg gagatgaaga gcgcattctt gatcgcccaa ttctttagat 1680 tggaattctt gtcctcgtcg aggtattctt tataggacga atttggaccc ggattgcata 1740 agaagatggt gggaatccca cctttaattt gaatgggctt tccgtatttg gtgtttgatt 1800 gccagtcctt ttgggccccc atgaattcct tgaaatgctt tagataatgc gggtcgacgt 1860 catcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagggaac gagcccacat ggttttaccg gttcggctat 1980 caccttccag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ctgataccca tacctctatt tcttctggga cttgtgtaaa tgaggatgat aagaacggac 2100 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttt ggatcttttt ccttaataat ttgaagagct tcgggtttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccgtgcac 2280 tcctggcatc gacttggaaa attccatcgt caagaaactc ccctcccttt tcaatgtaag 2340 ctttgacatc ggacgatgat ttagctccct gaatgttcgg atggaactgt gatgatctga 2400 atggggaact gagatcgaag aatcgcgggt tagtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatggggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa agggttttta actgggaaag ggcctcttcc tttgttaagg 2580 aacatcgggg ataggttatg aaataatttt tggcatttat ttgaaaacga ccggctcgtg 2640 gcatatttgc tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg 2700 gggggcatta tataggatgt cccccaatgg cattgtgtat tggtagactt ccattcaaat 2760 ttttgattgc aaatagtggc ggccatccga ttaatatt 2798 //