ID AY795607; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC AY795607; XX DT 01-NOV-2005 (Rel. 85, Created) DT 03-FEB-2006 (Rel. 86, Last updated, Version 3) XX DE Cotton leaf curl Rajasthan virus - [India:Hisa:2003] segment A, complete DE sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus - [India:Hisa:2003] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2752 RA Padmalatha K.V., Narayan Rishi, Malathi V.G.; RT "Complete nucleotide sequence of cotton leaf curl virus isolated from RT Hisar, Haryana, India"; RL Unpublished. XX RN [2] RP 1-2752 RA Padmalatha K.V., Narayan Rishi, Malathi V.G.; RT ; RL Submitted (27-OCT-2004) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; 715eb68e84732e6010a2e7972d6d8031. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Cotton leaf curl Rajasthan virus - FT [India:Hisa:2003]" FT /segment="A" FT /isolate="Hisar" FT /mol_type="genomic DNA" FT /country="India:Hisar, Haryana" FT /collection_date="AUG-2003" FT /note="acronym: CLCuRV-[Hisar]" FT /db_xref="taxon:369956" FT gene 131..487 FT /gene="AV2" FT CDS 131..487 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:Q32V64" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q32V64" FT /protein_id="AAX21508.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSEDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT gene 291..1061 FT /gene="AV1" FT CDS 291..1061 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q32V63" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q32V63" FT /protein_id="AAX21509.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQRAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFARVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1027..1467) FT /gene="AC3" FT CDS complement(1027..1467) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q32V62" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q32V62" FT /protein_id="AAX21512.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCSLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLYNINSLQSHKNIS" FT gene complement(1160..1612) FT /gene="AC2" FT CDS complement(1160..1612) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:Q32V61" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q32V61" FT /protein_id="AAX21511.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1509..2597) FT /gene="AC1" FT CDS complement(1509..2597) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:Q32V60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q32V60" FT /protein_id="AAX21510.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHLKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2141..2443) FT /gene="AC4" FT CDS complement(2141..2443) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q32V59" FT /protein_id="AAX21513.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQPGQHISIQTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQQMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2752 BP; 733 A; 555 C; 629 G; 835 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttgtcggag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc 300 gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg 360 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacgggcat 420 ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtgttagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgcca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattg atattataaa gtttgaattt 1080 tatttctgaa tattgatcta catacatagt ttgttggatt acattataca atacatgttc 1140 tacagcttta ataactaaat taattgaaat tacaccgaga ttgttcagat atttgaggac 1200 ttgggttttg aataccctta agaaaagacc agtctgaggc tgtaaggtcg tccagattcg 1260 gaatgttaga gaacacttgt gcagtcccag agctttccga gtgttgtagt tgaactggat 1320 cctgatcgtg agtatgtcca tattcgtcgt gaatggacgg ttgacgtggc tgatgatctt 1380 gaaataaagg ggatttggaa cctcccagat atatgcgcca ttccctgctt gagctgcagt 1440 gatgggttcc cctgtgcgtg aatccatggt tgtggcagtt gattgacaga taataagaac 1500 acccgcattc aagatctact ctcctcctcc tgttgcgcct cttcgcttcc ctgtgctgta 1560 ctttgattgg tacctgagta catgggtcta tcaagtgtga tgaagatcgc attctttaaa 1620 gcccaatttt ttagtgcaga attcttctct tcatccaaaa actctttata gcttgaattg 1680 ggccctggat tgcagaggaa gatagtggga attccgcctt taatttgaac tggcttcccg 1740 tattttgtat ttgattgcca gtccttttgg gcccccatga actccttaag gtgctttagg 1800 taatgcgggt cgacgtcatc aatgacgtta aaccaggcgt cattactgta tacccttgga 1860 ctcagatcta gatgtccaca cagataatta tgtggaccta atgatctggc ccacatcgtc 1920 ttccccgtcc tactgtcacc ctcaatcact acacttattg gtctattggc ccgcgcagcg 1980 gcactgacga cgttttcggc agcccacact tcaagttctt ctggaacttg atcgaaagaa 2040 gaagaggaaa aaggagaaac ataaggagct ggtggctcct gaaagattct gtctagattt 2100 gcatttaaat tatgaaattg cagtacaaaa tccttaggag ctagttcctt aatgactcta 2160 agagcctccg acttacttcc cgcgttaagt gctgcggcgt aagcgtcatt tgctgtctgt 2220 tgccctcctc ttgctgacct tccgtcgatc tgaaattgcc cccagtcgag aatgtccccg 2280 tccttctcga tgtaggattt gacgtcggag ctggatttag ctccctgtat gtttggatgg 2340 aaatgtgctg acctggttgg ggagaccaag tcgaagaatc gcatattctg gcacttgaat 2400 ttcccttcga actggatgag aacatgcaag tgaggagtcc catcttcgtg aagctctctg 2460 cagattctaa tatatttttt tgaagttggg gtttgtatat ttaataattg ggaaagtgct 2520 tcctctttgg tgagagaaca tttgggataa gtgatgaaat agtttttgga ataaataccg 2580 ttccgctttg gaggcatgtt gactaaaatt gatcaccgat tgaccgctct tgcaactctc 2640 cccggtatat cggtgatcaa tatatagtga tcaccaaatg gcataatggt aataaaaaaa 2700 ctttaatttg aaattcaaac caaaaggcta aagcggccat ccgtttaata tt 2752 //