ID AY795606; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC AY795606; XX DT 01-NOV-2005 (Rel. 85, Created) DT 03-FEB-2006 (Rel. 86, Last updated, Version 3) XX DE Cotton leaf curl Rajasthan virus - [India:Abohar:2003] segment A, complete DE sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus - [India:Abohar:2003] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2755 RA Padmalatha K.V., Monga D., Ajmera B.D., Malathi V.G.; RT "Complete nucleotide sequence of cotton leaf curl virus isolated from RT Abohar, Punjab, India (CLCuV-Abohar)"; RL Unpublished. XX RN [2] RP 1-2755 RA Padmalatha K.V., Monga D., Ajmera B.D., Malathi V.G.; RT ; RL Submitted (27-OCT-2004) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; 133a32e0fe8bf8d63f70165507f87bb6. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Cotton leaf curl Rajasthan virus - FT [India:Abohar:2003]" FT /segment="A" FT /isolate="Abohar" FT /mol_type="genomic DNA" FT /country="India:Abohar, Punjab" FT /collection_date="AUG-2003" FT /note="acronym: CLCuRV-[Abohar]" FT /db_xref="taxon:369955" FT gene 186..488 FT /gene="AV2" FT CDS 186..488 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:Q32V70" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q32V70" FT /protein_id="AAX21502.1" FT /translation="MLSVKYLQLLSQDYSPDTLGYELIRDLICILRSRNYVEASCRYRH FT FYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQEAQDVQDVQKSRCS" FT gene 292..1062 FT /gene="AV1" FT CDS 292..1062 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q32V69" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q32V69" FT /protein_id="AAX21503.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(970..1470) FT /gene="AC3" FT CDS complement(970..1470) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q32V68" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q32V68" FT /protein_id="AAX21506.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLYIISIRYRVIKIYPNLQRSINRVASVSTSH FT IKH" FT gene complement(1163..1615) FT /gene="AC2" FT CDS complement(1163..1615) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:Q32V67" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q32V67" FT /protein_id="AAX21505.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQNHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1512..2600) FT /gene="AC1" FT CDS complement(1512..2600) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:Q32V66" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q32V66" FT /protein_id="AAX21504.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSAFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2144..2446) FT /gene="AC4" FT CDS complement(2144..2446) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q32V65" FT /protein_id="AAX21507.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2755 BP; 735 A; 559 C; 626 G; 835 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccccc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 caattcaaac atgtgggatc cactattaaa cgaattcccc tgatacggtt cacgggtttc 180 ggtgtatgct ttctgtgaaa tatttgcaac ttttgtcgca ggattattca ccggatacgc 240 ttgggtacga gttaatacgg gatttaattt gtattttacg ctcccgtaat tatgtcgaag 300 cgagctgccg atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg tctgaacttc 360 ggcagcccat acaccagccg tgctgctgcc cccattgtcc gcgtcacaaa acaacaggca 420 tggacaaaca ggcctatgaa caggaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtattagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgtcaagtct gtttatgtgt tgggtaagat atggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacagg ctttggtcaa gaagtttgtc 900 agagttaaca attatgttgt ttacaatcaa caggaagcag gaaaatacga gaatcatacg 960 gaaaatgcgt taatgcttta tatggcttgt actcacgcta gcaaccctgt ttatgctacg 1020 ttgaagatta ggatatattt ttatgactct gtaacgaatt gatattatat aaagtttgaa 1080 ttttatttca gaatattgat ctacatacat agtttgttgg attacattgt acaatacatg 1140 ttctacagct ttaataacta aattaattga aattacaccg agattgttca gatatttgag 1200 gacttgggtt ttgaataccc ttaagaaaag accagtctga ggctgtaagg tcgtccagat 1260 tcggaatgtt agaaaacact tgtgcagtcc cagagctttc cgagtgttgt agttgaactg 1320 gatcctgatc gtgagtatgt ccatattcgt cgtgaatgga cggttgacgt ggctgatgat 1380 tttgaaataa aggggatttg gaacctccca gatatatgcg ccattccctg cttgagctgc 1440 agtgatgggt tcccctgtgc gtgaatccat ggttgtggca gttgattgac agataataag 1500 aacacccgca ttcaagatct actctcctcc tcctgttgcg cctcttcgct tccctgtgct 1560 gtactttgat tggtacctga gtacatgggt ctatcaagtg tgatgaagat cgcattcttt 1620 aaagcccaat tttttagtgc agaattcttc tcttcatcca aaaactcttt atagcttgaa 1680 ttgggtcctg gattgcagag gaagatagtg ggaattccgc ctttaatttg aactggcttc 1740 ccgtattttg tatttgattg ccagtccttt tgggccccca tgaactcctt aaagtgcttt 1800 aggtaatgcg ggtcgacgtc atcaatgacg ttaaaccagg cgtcattact gtataccctt 1860 gggctcagat ctagatgtcc acacagataa ttatgtggac ctaatgatct ggcccacatc 1920 gtcttccccg tcctactgtc accctcaatc actacactta ttggtctatt ggcccgcgca 1980 gcggcactga cgacgttctc ggcagcccac acttcaagtt cttctggaac ttgatcgaaa 2040 gcagaagagg aaaaaggaga aacataagga gctggtggct cctgaaagat tctgtctaga 2100 tttgcattta aattatgaaa ttgcagtaca aaatccttag gagctagttc cttaatgact 2160 ctaagagcct ccgacttact tcccgcgtta agtgctgcgg cgtaagcgtc attggctgtc 2220 tgttgccctc ctcttgctga ccttccgtcg atctgaaatt gcccccagtc gagaatgtcc 2280 ccgtccttct cgatgtagga tttgacgtcg gagctggatt tagctccctg tatgttcgga 2340 tggaaatgtg ctgacctgct tggggagacc aagtcgaaga atcgcatatt ctggcacttg 2400 aatttccctt cgaactggat gagaacatgc aagtgaggag tcccatcttc gtgaagctct 2460 ctgcagattc taatatattt ttttgaagtt ggggtttgta tatttaataa ttgggaaagt 2520 gcttcctctt tggtgagaga acatttggga taagtgatga aatagttttt ggaataaata 2580 ccgttccgct ttggaggcat gttgactaaa attgatcacc gattgaccgc tcttgcaact 2640 ctccctggta tatcggtgat caatatatag tgatcaccaa atggcataat ggtaataaaa 2700 aaactttaat ttgaaattca aaccaaaagg ctaaagcggc catccgttta atatt 2755 //