ID AY795605; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC AY795605; XX DT 01-NOV-2005 (Rel. 85, Created) DT 03-FEB-2006 (Rel. 86, Last updated, Version 3) XX DE Cotton leaf curl Rajasthan virus - [India:New Delhi:2003] segment A, DE complete sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus - [India:New Delhi:2003] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2754 RA Padmalatha K.V., Malathi V.G.; RT "Complete nucleotide sequence of cotton leaf curl virus isolated from New RT Delhi, India (CLCuV-NEW DELHI)"; RL Unpublished. XX RN [2] RP 1-2754 RA Padmalatha K.V., Malathi V.G.; RT ; RL Submitted (27-OCT-2004) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; a2c743a2cb414c0c46f69b07196224b8. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Cotton leaf curl Rajasthan virus - [India:New FT Delhi:2003]" FT /segment="A" FT /isolate="New Delhi" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /collection_date="AUG-2003" FT /note="acronym: CLCuRV-[New Delhi]" FT /db_xref="taxon:369954" FT gene 131..487 FT /gene="AV2" FT CDS 131..487 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:Q32V76" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q32V76" FT /protein_id="AAX21496.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT gene 291..1061 FT /gene="AV1" FT CDS 291..1061 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q32V75" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q32V75" FT /protein_id="AAX21497.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(969..1469) FT /gene="AC3" FT CDS complement(969..1469) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q32V74" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q32V74" FT /protein_id="AAX21500.1" FT /translation="MDSRTGEPITAAQARNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSELKFKLYLISIRYRVIKIYPNLQRSINRVASVSTSH FT IKH" FT gene complement(1162..1614) FT /gene="AC2" FT CDS complement(1162..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:Q32V73" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q32V73" FT /protein_id="AAX21499.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSKEWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1511..2599) FT /gene="AC1" FT CDS complement(1511..2599) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:Q32V72" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q32V72" FT /protein_id="AAX21498.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTTTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSGALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHPDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2143..2445) FT /gene="AC4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q32V71" FT /protein_id="AAX21501.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRGLLESLRN" XX SQ Sequence 2754 BP; 736 A; 557 C; 628 G; 833 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttgtcgcag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc 300 gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg 360 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat 420 ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtgttagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgtca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattg atattaaata aagtttgaat 1080 tttagttcgg aatattgatc tacatacata gtttgttgga ttacattgta caatacatgt 1140 tctacagctt taataactaa attaattgaa attacaccga gattgttcag atatttgagg 1200 acttgggttt tgaataccct taagaaaaga ccagtctgag gctgtaaggt cgtccagatt 1260 cggaatgtta gaaaacactt gtgcagtccc agagctttcc gagtgttgta gttgaactgg 1320 atcctgatcg tgagtatgtc catattcgtc gtgaatggac ggttgacgtg gctgatgatc 1380 ttgaaataaa ggggatttgg aacctcccag atatatgcgc cattccttgc ttgagctgca 1440 gtgatgggtt cccctgtgcg tgaatccatg gttgtggcag ttgattgaca gataataaga 1500 acacccgcat tcaagatcta ctctcctcct cctgttgcgc ctcttcgctt ccctgtgctg 1560 tactttgatt ggtacctgag tacatgggtc tatcaagtgt gatgaagatc gcattcttta 1620 aagcccaatt ttttagtgca gaattcttct cttcatccaa aaactcttta tagcttgaat 1680 tgggtcctgg attgcagagg aagatagtgg gaattccgcc tttaatttga actggcttcc 1740 cgtattttgt atttgattgc cagtcctttt gggcccccat gaactcctta aagtgcttta 1800 ggtaatgcgg gtcgacgtca tcaatgacgt taaaccaggc gtcattactg tatacccttg 1860 ggctcagatc tggatgtcca cacagataat tatgtggacc taatgatctg gcccacatcg 1920 tcttccccgt cctactgtca ccctcaatca ctacacttat tggtctattg gcccgcgcag 1980 cggcactgac gacgttctcg gcagcccaca cttcaagttc ttctggaact tgatcgaaag 2040 aagaagagga aaaaggagaa acataaggag ctggtggctc ctgaaagatt ctgtctagat 2100 ttgcatttaa attatgaaat tgcagtacaa aatccttagg agctagttcc ttaatgactc 2160 taagagcccc cgacttactt cccgcgttaa gtgctgcggc gtaagcgtca ttggctgtct 2220 gttgccctcc tcttgctgac cttccgtcga tctgaaattg cccccagtcg agaatgtccc 2280 cgtccttctc gatgtaggat ttgacgtcgg agctggattt agctccctgt atgttcggat 2340 ggaaatgtgc tgacctgctt ggggagacca agtcgaagaa tcgcatattc tggcacttga 2400 atttcccttc gaactggatg agaacatgca agtgaggagt cccatcttcg tgaagctctc 2460 tgcagattct aatatatttt tttgaagttg tggtttgtat atttaataat tgggaaagtg 2520 cttcctcttt ggtgagagaa catttgggat aagtgatgaa ataatttttg gaataaatac 2580 cgttccgctt tggaggcatg ttgactaaaa ttgatcaccg attgaccgct cttgcaactc 2640 tccccggtat atcggtgatc aatatatagt gatcaccaaa tggcataatg gtaataaaaa 2700 aactttaatt tgaaattcaa accaaaaggc taaagcggcc atccgtttaa tatt 2754 //