ID AY789694; SV 1; linear; mRNA; STD; VRL; 3263 BP. XX AC AY789694; XX DT 01-DEC-2004 (Rel. 82, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Barley stripe mosaic virus segment RNA2, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3263 RA Sun X., Qiu B., Li Y.; RT "Barley stripe mosaic virus (China strain)"; RL Unpublished. XX RN [2] RP 1-3263 RA Sun X., Qiu B., Li Y.; RT ; RL Submitted (21-OCT-2004) to the INSDC. RL Department of Molecular Virology, Institute of Microbiology, Chinese RL Academy of Sciences, Zhongguancun Beiyitiao No.13, Haidian District, RL Beijing 100080, P.R. China XX DR MD5; 2b540975eed78e8102ad827f3f6a6a32. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3263 FT /organism="Barley stripe mosaic virus" FT /segment="RNA2" FT /strain="China" FT /mol_type="mRNA" FT /db_xref="taxon:12327" FT CDS 90..686 FT /codon_start=1 FT /product="beta-A protein" FT /note="BSMVs2gp1; coat protein" FT /db_xref="GOA:Q5Q1D9" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q5Q1D9" FT /protein_id="AAV67980.1" FT /translation="MPNVSLTVKGGGHYNEDQWDTQVVEAGVFDDWWVHVEAWNKFLDN FT LRGINFSVASSRSQVSDYLAALDRDLPADIDRRFAGSRGTIGLPNYLPAPKFFRLDKRT FT IAELTRLSRLTDQPHNNRDVELSRTKRATTTPSPPAQALLETPTLRDVQPLKDSALHYQ FT YVLIDLQSARLPVYTRKTFERELALEWTIPDAEEA" FT CDS 804..2342 FT /codon_start=1 FT /product="beta-B protein" FT /note="BSMVs2gp2; putative helicase" FT /db_xref="GOA:Q5Q1D8" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5Q1D8" FT /protein_id="AAV67981.1" FT /translation="MDMTKTVEEKKTNGTDSVKDVFENSTIPKVSTGQEMGAHGDDSST FT SELRETLIANQTPLSVDNGAKSKLDSSDRQVPNPKLATTVEKKPELNKMKKSKKKRNQK FT PAQPSRPNDLKGKTKGKPQVGENVSENYTGVPMEAANQKPKTPKSVKMQSNLADKFKAN FT DTRRSELINKFQQFVHETCLKSDFEYTGRQYFRARSNFFEMIRLASLYDKHLKDCMARA FT CTLERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRTLLKGEFPAVCALANPA FT LMNDYSGIEGVYGLDDLLPSAVPITSDLLIIDEYTLAESAEILLLQRRLRASMVLLVGD FT VAQGKATTASSIEYLTLPVIYRSETTYRLGQETASLCSKQGNRMVSKGGKDTVIITDYD FT GETDETEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTLFLRNEDRKALADKHLR FT LVALSRHKSKLIIRADAEIRQAFLTGDIDLSSKASNSHRYSAKPDEDHSWFKAK" FT CDS 2311..2706 FT /codon_start=1 FT /product="beta-C protein" FT /note="BSMVs2gp3; putative transport protein" FT /db_xref="GOA:Q5Q1D7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q5Q1D7" FT /protein_id="AAV67982.1" FT /translation="MKTTVGSRPNKYWPIVAGIGVVGLFAYLIFSNQKHSTESGDNIHK FT FANGGSYRDGSKSISYNRNHPFAYGNASSPGMLLPAMLTIIGIISYLWRTRDSVLGNSG FT GNNSCGEDCQGECLNGHSRRSLLCDIG" FT CDS 2516..2983 FT /codon_start=1 FT /product="beta-D protein" FT /note="BSMVs2gp4" FT /db_xref="GOA:Q5Q1E0" FT /db_xref="InterPro:IPR007617" FT /db_xref="UniProtKB/TrEMBL:Q5Q1E0" FT /protein_id="AAV67983.1" FT /translation="MAMPHPLECCCPQCLPSSESFPIYGEHEIPCSETQAETTPAERTV FT RASVLTDILDDHYYAILASLFIIALWLLYIYLSSVPTETGPYFYQDLNSVKIYGVGATN FT PEVIAAIHHWQKYPFGESPMWGGLVSVLSILLKPLTLVLALSFFLLLSSKK" XX SQ Sequence 3263 BP; 971 A; 643 C; 741 G; 908 T; 0 other; gtaaaagaaa aggaacaacc ctgttgttgt tcgacactaa actaaatata tattatctta 60 ttagtgcatt tcttttaccg cttcacagta tgccgaacgt ttctttgact gttaagggtg 120 gggggcatta taacgaggat caatgggata cacaagttgt ggaagccgga gtgtttgacg 180 attggtgggt tcacgtagaa gcctggaata aatttctaga caatttacgt ggtattaact 240 tcagcgttgc ttcctctcgg tcgcaagttt ctgactactt agctgcgtta gatcgtgatc 300 tacctgctga catagacaga agatttgcag gttctagagg aacaatcggt ttacccaatt 360 atcttcctgc accaaaattc tttcgtctcg ataagcgaac tattgctgaa ctgactagac 420 tctctcgtct tacggatcag ccgcacaaca atcgcgatgt agagcttagc cgaacgaaaa 480 gagccacaac taccccatct cccccggcgc aggcactgtt ggagactcct actcttcgtg 540 atgttcaacc gttaaaggat agtgcgttgc attatcaata cgtgttgatt gatctacaga 600 gtgctagact cccagtgtat accaggaaga ctttcgaacg tgaactcgct ttggaatgga 660 ccattccaga tgccgaggaa gcgtgacctg ctgttgaagc ggtaaaagga tgtacatatg 720 tatcttaatt attttgttta tttactttct tttactttta gtttttgctt tttacgcttt 780 aactagatgt attgacttta gccatggaca tgacgaagac tgttgaggaa aagaaaacaa 840 atggaactga ttcagtgaaa gatgtttttg agaactcgac gattcccaaa gtttcaactg 900 gacaggaaat gggcgcacac ggtgacgatt cttctacttc tgaattaagg gaaactctaa 960 ttgccaatca gactccattg tccgttgata atggtgccaa atccaaattg gattcttctg 1020 atagacaagt tcctaatcca aagttggcaa caactgtgga gaagaaaccg gagttgaaca 1080 aaatgaagaa gtccaaaaag aaaagaaacc aaaaacctgc tcaaccgagt aggcccaatg 1140 accttaaagg aaagactaag ggaaaacctc aagtgggtga gaatgtgagt gagaactata 1200 ctggggttcc tatggaagca gctaatcaaa agccgaagac gcctaagtct gtgaaaatgc 1260 aaagcaatct ggccgataag ttcaaagcga atgacactcg tagatcagaa ttgattaaca 1320 agtttcagca atttgtgcat gagacttgtc ttaaatctga ttttgagtac actggtcgac 1380 agtatttcag agctagatcc aatttcttcg aaatgattag gctcgcatcc ttgtacgaca 1440 agcatctaaa agattgcatg gcgcgagcct gcaccttaga acgagaacga ttgaagcgta 1500 agttactcct agtacgagct ttgaaaccag cagtggattt ccttacggga atcatctctg 1560 gagttcctgg ctcaggaaaa tcaaccattg tgcgtacttt gctcaaaggt gaatttccgg 1620 ctgtttgtgc tttagccaat cctgccttaa tgaacgatta ttctggtatt gaaggcgttt 1680 acgggttaga tgacctgttg ccttctgcag ttccgataac gtctgattta ttgatcatag 1740 atgaatatac acttgctgag agcgcggaaa tcctgttgtt acaacgaaga ctcagagcct 1800 ctatggtgtt gttggtcggg gatgtagctc aaggaaaagc caccactgct tctagtattg 1860 agtatttaac tctgccggtg atctacagat cagagacgac ttatcgtttg ggacaagaga 1920 ctgcttcact ttgcagtaag cagggtaaca gaatggtttc aaagggtgga aaggacacag 1980 tgatcattac tgattacgat ggcgaaacag atgaaacaga gaaaaatatc gcttttactg 2040 tcgatacagt tcgagatgtg aaagattgtg ggtacgattg tgccctggca attgatgtgc 2100 aagggaaaga attcgattca gtgactttat tcctaaggaa cgaagaccgg aaagctttag 2160 cagataagca tttgcgttta gtcgctttga gcagacataa gtcgaagtta atcatcaggg 2220 ccgacgcgga aattcgccaa gcattcctga caggtgatat tgacttgagc tctaaggcga 2280 gtaactctca tcgttattct gcaaaaccgg atgaagacca cagttggttc aaggccaaat 2340 aagtattggc caattgtcgc cggaatcggt gtcgttggat tgtttgcgta tttgatcttt 2400 tcaaatcaaa aacactctac ggaatccggt gataatattc acaagttcgc taacggaggt 2460 agttacagag acgggtcaaa aagtataagt tataatcgca atcatccttt tgcctatggc 2520 aatgcctcat cccctggaat gttgctgccc gcaatgctta ccatcatcgg aatcatttcc 2580 tatttatggc gaacacgaga ttccgtgctc ggaaactcag gcggaaacaa ctcctgcgga 2640 gaggactgtc agggcgagtg tcttaacgga cattctcgac gatcattact atgcgatatt 2700 ggctagtctt tttatcattg ctctatggct attgtatata tatctaagca gtgtacctac 2760 ggaaactggt ccttacttct atcaagatct aaactctgtg aagatctatg gagtaggggc 2820 tacgaatcca gaagttattg cggccatcca ccattggcag aagtaccctt ttggggagtc 2880 tccgatgtgg ggaggtttag tcagtgtttt gagtattctt cttaaaccgc tgacgttggt 2940 tttagcgtta agcttttttc tcttgctttc ttcaaaaaag tgaaaaaaaa aaaaaaaaaa 3000 aaaaaaaaaa aaaaaaaaaa aaaatgtttg atcagatcat acaaatctga tggtgcccat 3060 caaccatatg atgggagtgt ttacaagtcc actataatcg aacttgaaaa accctgcctg 3120 aattggaaac catgaatctt aacggattct ggagagaaaa tttaggaatt ggtatgtaag 3180 ctacaacttc cggtagctgc gtcacacttt aagagtgtgc atactgagcc gaagctcagc 3240 ttcggtcccc caagggaaga cca 3263 //