ID AY789693; SV 1; linear; mRNA; STD; VRL; 3795 BP. XX AC AY789693; XX DT 01-DEC-2004 (Rel. 82, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Barley stripe mosaic virus segment RNA1, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3795 RA Sun X., Qiu B., Li Y.; RT "Barley stripe mosaic virus (China strain)"; RL Unpublished. XX RN [2] RP 1-3795 RA Sun X., Qiu B., Li Y.; RT ; RL Submitted (21-OCT-2004) to the INSDC. RL Department of Molecular Virology, Institute of Microbiology, Chinese RL Academy of Sciences, Zhongguancun Beiyitiao No.13, Haidian District, RL Beijing 100080, P.R. China XX DR MD5; 1a5c080affba0ce9ab5b79a836f8e7ec. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..3795 FT /organism="Barley stripe mosaic virus" FT /segment="RNA1" FT /strain="China" FT /mol_type="mRNA" FT /db_xref="taxon:12327" FT CDS 92..3508 FT /codon_start=1 FT /product="alpha protein" FT /note="BSMVs1gp1; contains methyltransferase and helicase FT domains" FT /db_xref="GOA:Q5Q1E1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q5Q1E1" FT /protein_id="AAV67979.1" FT /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIVD FT SVEKKAVSRKHVDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYL FT LDMVPMKETFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGS FT KDKPLRLLSRYQNILREQAARTTAFMAGEVNAGDLDGEVFCENTFQDCVRGVPEGFLKT FT AIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGR FT IKFFFANDPNAGYSHDLKDYLKYVEKAYVDIEDGVSAIELMQMRGDTMFFKITDVTAAM FT YHMKYRGMKRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKN FT KEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENS FT IISYFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYADFDLTTFDICD FT PVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLALKMAQKVTGTVTEC FT EKDLGHLVQPVKQILVQLMMPNVVRALCRPRSPTSPLDISIPRSTPSHSSSDSEQSVTE FT EASSSIAGSVPTWEIATKKDLTFQRIDEDMSRRTGMPPRPKVTSSYNMNARAEFLYYQL FT CSVICERAQILSVIEDFRQNLIFSDKVAVPLNARFYSFKSLKPGWVFKTPSYSEVGHSY FT AVHFDFKTVGTDLEESLAFCRLVPVSWDKSGKYIATIPHFPERHGYYVICDNTKLCNNW FT LIYNKLVDVYALVTDRPLKFELIDGVPGCGKSTMILNSCDIRREVVVGEGRNATDDLRE FT RFKRKKNLNSKIANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIMFCADKLGA FT SEILAQGDRAQLPMICRVEGIELHFQSPDYAKTIINPKLRSYRIPGDVAFYLSAKEFYK FT VKGVPQKVTTTNSVKRSLYARGETTPERFVGLLDVPVRKDTHYLTFLQAEKESLMSHLI FT PKGVKKEAISTIHEAQGGTYENVILVRLQRTPNEIYPGGLRFAPYIVVGTSRHTKTFTY FT CSVTDDKLLLDIADVGGIAHTPIRTFESHIV" XX SQ Sequence 3795 BP; 1123 A; 706 C; 894 G; 1072 T; 0 other; gtatgtaagt tgcctttggg tgtaaaattt cttgcatgca cataatcgta atcgattctt 60 cttgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgcaatct 120 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttccagtt cagtaaggtc 180 acccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggaaaagaa 240 agcggtcagt cgcaagcatg ttgatgtacg gcgcaacatc tcttctgaag agttgcagat 300 gttgataaat gcatatcctg aatatgccgt ttcatcttca gcttgtgaat ctggtactca 360 tagcatggcg gcttgttttc gatttctgga gacagaatac ctcttagata tggttccaat 420 gaaagagact tttgtctacg acattggtgg taactggttt tctcacatga agtttcgtgc 480 tgatagagaa attcattgtt gctgtccaat cttatcaatg agagattctg aaagactgga 540 aacacgcatg atggcgatgc aaaaatatat gcgtggatcg aaagataaac cgttgcgctt 600 gttaagccgt tatcaaaata tactgcgtga acaagcggcg agaacaactg cctttatggc 660 aggtgaggtg aatgcgggtg atcttgatgg agaggtgttt tgtgagaaca cgtttcaaga 720 ctgtgtgaga ggagtgcccg aaggtttttt gaagacagct atagcagttc atagcattta 780 cgatatcaaa gtggaagaat ttgcgtctgc gctgaaaaga aaaggtataa cacaggctta 840 tgggtgcttc ctgtttcctc ccgccgtatt gataggccag aaggaaggta ttttaccctc 900 cgtggacggt cattacttgg ttgagaatgg taggattaag ttcttctttg caaatgatcc 960 gaatgccggt tactcgcacg accttaagga ttatctgaag tatgtggaga aggcctatgt 1020 ggatatagag gacggagtgt ctgctattga gctgatgcaa atgcgaggtg ataccatgtt 1080 ctttaagatc acggatgtca ccgcagcaat gtatcatatg aaatacagag gaatgaaacg 1140 tgatgaaaca ttcaaatgta ttccgttgct aaagaattca tctgttgttg tgcctctatt 1200 ttcgtgggac aaccgttctt taaagatcac aagtggttta ctaccgcgaa ctttggttga 1260 gcaaggtgcg gcgttcatca tgaagaacaa ggaaaaagac ttgaacgttg ccgtgttgaa 1320 gaactacctt tccgctgtga acaattcata cattttcaac ggatctcagg ttagagatgg 1380 tgtgaaaatt gctccggatt taatttctaa attggcagtg actctgtatc tgagagaaaa 1440 agtctatcga caaagagaaa attcaatcat aagttatttt gaacaagaaa tgcttcacga 1500 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccgaata ctctttcgag 1560 tgtttggaag aacatgcgaa aatcactgat ggaatggttt ggttacgcag attttgactt 1620 gactactttt gatatttgcg atcccgttct ctatgtagag atagtggatc ggtacaagat 1680 cattcaaaaa gggcgaattc cacttggcga gttctttgat tgtcatgaag aatgcgagaa 1740 ttacgaacta cgtgagaagg agaaaaatga cctagcgttg aaaatggccc agaaggtaac 1800 agggacggtg actgaatgcg agaaggacct gggacatctt gttcagccgg taaaacagat 1860 actagttcaa cttatgatgc ccaatgttgt cagagcgcta tgtagacctc gtagcccaac 1920 gtctcctttg gacattagta tcccgaggtc aactccatca cactcaagtt cagattctga 1980 acaatctgtg actgaagaag cgagctcctc cattgcgggt agcgtaccaa catgggaaat 2040 tgcgactaag aaagatctaa cctttcagcg aattgatgaa gacatgtctc gacgaactgg 2100 tatgcctcca agaccaaaag taacttccag ttacaacatg aatgccagag ccgagtttct 2160 ctactatcaa ctgtgtagcg tgatttgcga aagggctcag attttgagtg tcatcgaaga 2220 ctttcgtcag aatttgatat tctcagataa agtggccgtt ccattgaacg ctagatttta 2280 cagttttaag tcgttgaaac ctggatgggt gttcaagact ccatcgtata gtgaagtagg 2340 ccacagctat gcagtacatt ttgacttcaa gacagtcgga actgatttgg aagaaagctt 2400 ggccttttgc cgattagtac cggtttcatg ggataaaagc ggcaaataca tcgcgacaat 2460 tcctcatttt cccgagagac atggttacta cgtgatatgt gacaacacta aattgtgtaa 2520 caattggctt atttacaata agttagttga cgtctacgca ttggtgactg atagacctct 2580 gaaatttgag ttgattgacg gagttcctgg ctgtggaaag tctaccatga ttttaaacag 2640 ctgtgacatt cgacgcgaag ttgttgttgg tgaaggacgg aatgcgactg atgacttaag 2700 agagaggttc aagcgtaaga aaaatttgaa tagtaagatt gctaatcata gagttcggac 2760 gcttgacagc ttattacttg ctgaaggacc ttgtgtacca caagctgata ggtttcattt 2820 tgatgaagct ctaaaagttc attacggtgc tataatgttc tgtgctgata agcttggtgc 2880 ctcagaaatt ctcgctcagg gcgatagggc tcaattgcca atgatctgtc gtgtagaagg 2940 aattgaactt cattttcagt ctcctgatta cgcgaagacg atcataaacc ctaagctgcg 3000 atcataccgt attcctggag atgttgcctt ctacctgagt gccaaggagt tttacaaagt 3060 taaaggagta cctcaaaagg ttacaactac taacagcgtg aaacgctcct tgtacgctag 3120 aggtgaaacg actccggaga gattcgtggg cttgcttgat gttccagtga gaaaagacac 3180 ccactatcta accttcttac aagctgagaa ggaaagtttg atgagtcatt tgattccaaa 3240 gggtgtgaag aaagaggcga tttcaacgat tcatgaggca caaggtggta cctatgaaaa 3300 tgtgattctg gtccgtttgc aacggacacc caacgaaata tatccgggtg gacttaggtt 3360 tgccccttac attgtggttg ggacttcaag gcatacaaaa actttcactt attgtagtgt 3420 tacggacgat aagttgcttt tagatatcgc cgatgtcggt ggtattgcac atacacctat 3480 tcgtactttt gaatctcata tagtttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3540 aaaaaaaaaa aaaaaatgtt tgatcagatc atacaaatct gatggtgccc atcaaccata 3600 tgatgggagt gtttacaagt ccactataat cgaacttgaa aaaccctgcc tgaattggaa 3660 accatgaatc ttaacggatt ctggagagaa aatttaggaa ttggtatgta agctacaact 3720 tccggtagct gcgtcacact ttaagagtgt gcatactgag ccgaagctca gcttcggtcc 3780 cccaagggaa gacca 3795 //