ID AY789137; SV 1; linear; genomic RNA; STD; VRL; 6181 BP. XX AC AY789137; XX DT 01-NOV-2005 (Rel. 85, Created) DT 24-SEP-2009 (Rel. 102, Last updated, Version 4) XX DE Dulcamara mottle virus, complete genome. XX KW . XX OS Dulcamara mottle virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6181 RX DOI; 10.1016/j.virol.2009.06.041. RX PUBMED; 19664793. RA Tzanetakis I.E., Tsai C.H., Martin R.R., Dreher T.W.; RT "A tymovirus with an atypical 3'-UTR illuminates the possibilities for RT 3'-UTR evolution"; RL Virology 392(2):238-245(2009). XX RN [2] RP 1-6181 RA Tzanetakis I.E., Martin R.R., Dreher T.W.; RT ; RL Submitted (22-OCT-2004) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; f4d89f8affe2d1a9fb364282c01c8817. XX FH Key Location/Qualifiers FH FT source 1..6181 FT /organism="Dulcamara mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:70823" FT 5'UTR 1..129 FT CDS 130..1860 FT /codon_start=1 FT /product="overlapping protein p62" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:Q32WC8" FT /protein_id="AAW65469.1" FT /translation="MANGFSVSPRSTQLDHTSRCCVSSNSNFGRSTSPGFSGNLSMASS FT KRGSSFLEQPGDTGFILRDYAPPSPHPQNSGDFSPTPTLELPLCHSLHSPLHETLEVSK FT APTEKPQFPGVKKLPAHVIRHRPVSHHLHHSSHNRVRLHARRSNVLPSQSNMRPLSEVS FT KHSETVLQLGDPTRVQLHGPFSPPRDLHLSDLRTNSSLRAGKSLIRFVQSTPQRTQLAK FT NSFYSQQSHYAQRHNIGLLGPPPLYLDTTGASLTAPCPCFSQHSFIQFGSLSPVPACAH FT STCFVPNPGSSRVAFSFLSKPTFETSACPCSSVQLPLHLHKSGSHSPNFRSSRLCSHAK FT QQATVLLGNSKRLGQSSNFRSSKCQRPPKDQVSLPGQPAAKDSPLLKAALHADIQPVCA FT PHVRTSRSPKAAGLSHPSSNNLTLVHCRTQLHQKTTSLDRSISPSQSFSSHSSEEIFYS FT PKASHSGPGILGRAPSPVTPTSPPSGLQKRKPPTSKLEVHAESRSDPRSFARLPSSDPP FT HSGPVLPRSVPPQPPSPKISPPVGTDLLLSRRNSSISSPASGILQFSFFNSTTPSSASV FT " FT CDS 137..5365 FT /codon_start=1 FT /product="replicase" FT /note="p196; contains methyltransferase, protease, helicase FT and polymerase signature motifs" FT /db_xref="GOA:Q32WC7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q32WC7" FT /protein_id="AAW65470.1" FT /translation="MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPWLLPKE FT ALPFLNNQGIPASSFGTMPHPHPIHKTLETFLLHQHWSFLCVTPSTVLFMKPSKFQKLQ FT RKNPNFQELKNYRLTSSDTVRYPTTSTTLPTTESVFMQDALMYFHPSQICDLFLKSPNI FT QKLFCSLVIPPESSFTDLSLHPEIYTYQISGQTLHYVPENHSSGSYNQPLSALSWLKIH FT SIASNHITLSVTILDSWGPLHSILIQRGLPSRHPAHVSPNIPSSNSDLFHRFQLVPTAL FT ASFRIPEALELPSASFLNQPLRHRLVPVQVYNSLFTYTRAVRTLRTSDPAGFVRTQSNK FT PQYSWVTPSAWDNLQTFALLNANVRQKTRYLFLDNPLQKILHYLKQHSMLIFSRSVPLM FT SALLVLPKLLGYRIPVPTISHLSIAGHSFIRKPPHLTVPFLHLKAFPRILQRKSFTLPK FT PLIQALEFLGAPLHPSPPLLPRLGFKRGSLPLPNWKFMLSLGLIPEVLLAFLHLTRPTQ FT DQSYHDLYHHNLHPQRFHLQWELTSFSVEEIHPFLPLHLESSNSHSSTPPPPVPPQFDQ FT TAVAHSPIAESPTLSPPVSLSFGSLPLVSTVNPDGSLTMHESVVNPRSPSPEPPQSALV FT NDPTCSGPVLPFEDLFPASYIHETPSFQTRLRVHPSSHLPIPARHCLLAALSDATNYSI FT DQLWDFLQEILPDSLLHNPEVDQFGLSSDILIALSYHLHFQVHVLSASGWLYYGLSNAS FT TCYYLKHEFGPPAHYSVYRRIVGGAPKAANSNRCTDYGRLMLRFKYNDSYLPFRQVHKF FT SPSLSHAKNLISNMKNGFDGILSTIDTPSSSSGPSPRERIYALDSICDVARTRCVDLVH FT IAGFPGCGKTHPLQQLLKTRAFSNFRISCPTTELRNEWKADMKPNPEEFWKFSTWESSL FT LKKGPILVIDEIYKLPRGYLDLSIIADPSIEFVVILGDPLQGEYHSSSPHSSNNRLQSE FT VSRLSRFIDCYCWWSYRIPKSIARLFNVHTFSSEEGFISTISSHRPNGKNLVNSISTAD FT TMHQLGHHALTISSSQGMTFDTPVSILLDRHTVLLSPSNTFVALTRSKKGVEFLGNLTV FT ASNNFGNNYMFSAALTSQEVCMSQCFPRLFDSLPKIYEPIKSRRVRLTGGDISQGEISK FT LESRAKPPHVSVDYNGDVVHFSSSVFGSNEERRLDVLHLPPTRLILQSDLVSGLPSDPS FT TSLCDAIFGTPFTPAYPEETFENLAAFFLPAHDPDLKEMLYRDDASSQFPYLDSPFLLS FT CQPSSLIAAIHKPATDSTLLPLSVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVYN FT RHPSESIPFDPVLFAECICINDYAQLSSKTKATIVANAERSDPDWRYTSVKIFAKSQHK FT VNDGSIFGNWKACQTLALMHDYVILTLGPVKKYQRFFDQKDCPAHIYKHCGKTPADLSI FT WCKTNLSHQVYIENDYTSFDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLKTNVDTQF FT GPLTCMRLTGEPGTYDDNTDYNLAVIYSQYSMGSTPCLVSGDDSVVAGQPPVNPAWNAI FT KNLLHLKFKTHCSAYPLFCGYYVSPVGAVRNPHALFAKLMIAHDDGSIPEKKLSYLSEF FT SVGHSIGHEFWSAIPDSIHCYQAAVYNFFCRHCSRSEKLLLTLDSIDESHLEKLSYKVK FT WVSKTLFSMLPQKARDHFISASKISSFPDDPSVSSLESELLHGFQ" FT misc_RNA 5361..6181 FT /product="subgenomic RNA" FT CDS 5370..5936 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O89519" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:O89519" FT /protein_id="AAW65471.1" FT /translation="MDESKIVTVKQPSISAPGFTLSAPEGEQAGSIRQIFQFEATSVGV FT VETLAQVSLSASESLAKLTAGYRRAKLVELFLTITPTQLAIDNPVTVDVVWVPANSTAT FT PSKILSVYGGQRFLIGGTLTTSQVIRVPCNLQSVNAMIKDSTIYTDSPKLLVYSPVAKG FT SPKTPSATVQIAGQILLSAPLLQAL" FT 3'UTR 5937..6181 XX SQ Sequence 6181 BP; 1462 A; 1992 C; 1056 G; 1671 T; 0 other; gtaattatcc agaacaacac cttgctcttc agcaaccttg ttctttacct ttcttccctt 60 ctactcgtta ccctcttctg agcctaacga atcttctttc ccaactgacc cacctcggtc 120 cgtcagttaa tggcaaatgg cttttcagtc agccctagaa gcactcaact cgaccacaca 180 tcgagatgct gtgtctcatc caattctaac ttcggtcgtt cgacctctcc aggattctct 240 ggaaacttat ccatggcttc ttccaaaaga ggctcttcct ttcttgaaca accaggggat 300 accggcttca tccttcggga ctatgcccca ccctcacccc atccacaaaa ctctggagac 360 ttttctccta caccaacact ggagcttcct ctgtgtcact ccctccacag tcctcttcat 420 gaaaccctcg aagtttcaaa agctccaacg gaaaaacccc aatttccagg agttaaaaaa 480 ttaccggctc acgtcatcag acaccgtccg gtatcccacc acctccacca ctcttcccac 540 aacagagtcc gtcttcatgc aagacgctct aatgtacttc catcccagtc aaatatgcga 600 cctctttctg aagtctccaa acattcagaa actgttctgc agcttggtga tcccaccaga 660 gtccagcttc acggaccttt ctctccaccc cgagatctac acctatcaga tctccggaca 720 aactcttcat tacgtgccgg aaaatcactc atccggttcg tacaatcaac ccctcagcgc 780 actcagctgg ctaaaaattc attctatagc cagcaatcac attacgctca gcgtcacaat 840 attggactcc tggggccccc tccactctat cttgatacaa cgggggcttc cctcacggca 900 ccctgcccat gtttctccca acattccttc atccaattcg gatctctttc accggttcca 960 gcttgtgccc acagcacttg cttcgttccg aatcccggaa gctctagagt tgccttcagc 1020 ttcctttcta aaccaacctt tgagacatcg gcttgtccct gttcaagtgt acaactccct 1080 cttcacttac acaagagcgg ttcgcactct ccgaacttca gatccagcag gctttgttcg 1140 cacgcaaagc aacaagccac agtactcctg ggtaactcca agcgcctggg acaatcttca 1200 aactttcgct cttctaaatg ccaacgtccg ccaaaagacc aggtatctct tcctggacaa 1260 cccgctgcaa aagattctcc attacttaaa gcagcactcc atgctgatat tcagccggtc 1320 tgtgcccctc atgtccgcac ttctcgttct cccaaagctg ctgggctatc gcatcccagt 1380 tccaacaatc tcacacttgt ccattgccgg acacagcttc atcagaaaac cacctcactt 1440 gaccgttcca tttctccatc tcaaagcttt tcctcgcatt cttcagagga aatcttttac 1500 tctcccaaag cctctcattc aggccctgga attcttgggc gcgccccttc acccgtcacc 1560 cccacttctc ccccgtctgg gcttcaaaag aggaagcctc ccacttccaa attggaagtt 1620 catgctgagt ctcggtctga tccccgaagt tttgctcgcc ttccttcatc tgacccgccc 1680 cactcaggac cagtcctacc acgatctgta ccaccacaac ctccatcccc aaagatttca 1740 cctccagtgg gaactgacct ccttctcagt agaagaaatt catccatttc ttcccctgca 1800 tctggaatcc tccaattctc attcttcaac tccaccaccc ccagttccgc ctcagtttga 1860 tcagactgct gttgctcaca gccccatagc ggaatctccc acactgtctc ccccagtctc 1920 tctctctttt ggatctcttc cactcgtctc caccgtcaac cctgacggtt ccctaaccat 1980 gcatgaaagc gtggtgaatc ccaggtcgcc aagcccagaa cctcctcaga gtgctttggt 2040 taacgacccc acctgttctg gtccggtcct ccccttcgag gatctgttcc ctgcctctta 2100 catccatgaa actccctctt ttcaaactcg tctccgagtc cacccctcct ctcatttgcc 2160 cattccagcc aggcattgcc tcctagccgc tctgagcgat gcaaccaatt acagcattga 2220 tcaactctgg gattttctcc aagaaatctt gcctgactcc ctactacaca acccagaagt 2280 tgatcagttc ggactttctt cggacatttt gatagctctg tcctaccacc ttcacttcca 2340 agtccacgtt ctttctgctt caggttggtt gtactatggc ttgtccaacg cttccacttg 2400 ttactatctg aagcacgagt tcggccctcc cgctcattac tctgtttatc ggagaattgt 2460 tgggggtgcc cccaaggctg ccaactcaaa tcgttgcacc gattatggtc ggctcatgct 2520 tcgtttcaag tacaacgatt cttatcttcc ctttcgacag gttcacaagt tcagcccctc 2580 cctctcacat gccaaaaatc tcatctcaaa catgaaaaat gggtttgatg gcattctttc 2640 taccatcgat actccaagct cctcatccgg tccttcacca cgtgagcgaa tctacgctct 2700 cgactcaatc tgtgatgttg ccagaactcg ttgtgtcgac ttagtccaca ttgctggctt 2760 ccctggatgc ggcaagactc accctcttca acaactgctc aagactcgag ctttcagcaa 2820 tttccgcatc tcatgcccaa caactgagct ccgtaatgaa tggaaagcgg acatgaaacc 2880 caatccagag gagttctgga agttctccac ctgggagtct tcactgctta aaaaaggtcc 2940 cattctggta atagatgaaa tctacaaact tcctcgaggg tatttggatc ttagcatcat 3000 cgccgatcca tcgattgaat tcgtcgttat tcttggggac cctcttcaag gcgagtacca 3060 ctcatccagc ccacactcat ccaacaaccg ccttcagtct gaagtttcta gactttctcg 3120 gttcatcgac tgctactgct ggtggtcata cagaatcccc aagtccatcg cccgtctttt 3180 caacgtccac actttcagct ctgaggaggg ctttatttcc actatctcct ctcataggcc 3240 caatggcaaa aacctggtga acagcatctc cactgctgat actatgcacc agcttggaca 3300 tcacgccttg actatttcaa gcagccaagg catgacgttc gacacccctg tctccatcct 3360 tttggatcgc cacactgttc ttctgtcccc ctccaacact tttgtggctc tcactaggtc 3420 caaaaaagga gtggagtttc tcggaaattt gaccgttgcc tccaacaact ttggcaacaa 3480 ttacatgttt tccgccgctc tcacatctca agaagtgtgc atgtcccaat gcttccctcg 3540 cctgttcgat tcactgccca agatctatga gcccatcaaa tctcgcagag ttcggctcac 3600 agggggcgac atctcccaag gcgaaatctc caagttggaa tcaagagcca agcctcccca 3660 tgtcagcgtc gactacaacg gcgacgtcgt tcacttcagc tcatctgttt ttggttccaa 3720 cgaagaacgt cgtcttgatg tcctccattt gcccccaact cgattaattc ttcagtccga 3780 tcttgtcagt ggactgccat cagacccctc cacttccctg tgtgacgcca ttttcggcac 3840 ccccttcaca cctgcctatc ctgaggaaac ttttgaaaac ctagcagctt ttttcctgcc 3900 cgctcatgac cctgacctca aggaaatgct ttaccgagat gatgccagct ctcagtttcc 3960 ttatttggat tcaccattcc ttctgtcctg ccagccttct tccctcattg ccgccattca 4020 caagccagcc accgactcca ctcttctccc actctctgtg aacaaaaggc tgcgatttcg 4080 gccttccact tctccgtact gtttcacccc caatgacttc atcctcggtg aacacctttt 4140 ccagtcgctc tgttctgtct acaaccgtca cccctcagaa tctatccctt ttgatccagt 4200 tctatttgct gaatgcatct gcatcaatga ctatgctcaa ctctcttcaa agaccaaagc 4260 cactattgtg gccaatgctg aacggtcaga ccctgattgg cgttacactt ctgtgaaaat 4320 tttcgccaag tcccaacaca aagtcaatga tggttcaatc tttggcaact ggaaagcctg 4380 tcaaactctc gccttgatgc acgattatgt cattctcacc cttggcccag ttaaaaaata 4440 tcagcgcttc tttgatcaaa aagactgccc cgcccacatt tacaagcatt gcgggaaaac 4500 tccagctgat ctctccattt ggtgcaagac caatctttcc caccaagtct acattgagaa 4560 cgactacacc tcctttgatc aaagccaaca tggcgaggcc gttgttcttg aagtcctgaa 4620 aatgcaaaga ctccagatcc caaaagagct aattgaattg cacgtccatc tcaaaaccaa 4680 tgtcgacact caatttggac cactcacttg catgcggctc acaggcgagc caggcactta 4740 tgatgacaac actgactaca atctggctgt catctattct cagtattcca tgggctctac 4800 tccttgtctc gtttctggag acgattccgt tgtcgctggg caaccgccag tcaacccagc 4860 ctggaatgcc atcaagaatc tcctccactt aaagttcaag acccactgca gcgcctaccc 4920 tctcttttgc ggatactatg tatcccctgt tggtgctgtt cgcaatccac atgctttgtt 4980 tgccaagctg atgatcgctc atgacgatgg ctcaatccct gaaaaaaaac tctcttatct 5040 cagcgagttt tccgttggtc actcaattgg tcatgagttc tggtcggcca tccccgactc 5100 tattcattgc tatcaggcgg ctgtttacaa tttcttctgc cgacattgct ccagaagcga 5160 aaagctcctc ttaactctag actccattga tgaatctcat cttgagaaac tctcttacaa 5220 agtcaagtgg gtctcaaaaa ctctgttttc aatgcttcca caaaaggcta gagatcactt 5280 catttcagcc agcaaaataa gcagctttcc tgacgatccc tcagtttcgt cacttgagtc 5340 tgaattgctt catggttttc aatagcaaaa tggatgaatc aaaaattgtg accgtcaagc 5400 agcccagcat atctgccccc gggttcactc tgtccgctcc agaaggagaa caggctggct 5460 ccatccgcca aatcttccag tttgaggcca cttctgtagg cgttgttgaa actctggccc 5520 aagtcagcct ttccgcctcc gagtctcttg ccaagctcac tgctggatac aggcgagcca 5580 aactcgtcga gctctttctc accatcactc ctactcagct tgccatagac aatcccgtca 5640 ccgttgacgt tgtctgggtt cctgctaatt ccacagccac tccctccaag atcctctccg 5700 tctacggtgg ccaaagattc ctcattggag gcactttgac cacctctcaa gttatccgcg 5760 ttccttgcaa cttgcaatct gttaacgcaa tgatcaagga ctccaccatt tacactgact 5820 ccccaaagct cctggtttac tcgccagtcg ccaaagggtc tcccaaaacc ccttctgcaa 5880 cagtccagat tgccggacaa atccttcttt ctgcccctct cttgcaggca ctctgatttc 5940 ttcacacttc agagccctgt cagcaaaaca aattaccaaa aaaaaaaaaa aaaaaaaaaa 6000 aaaaaaagaa aaaaaaaaaa aacaaaacaa aacaaacctt ttccctacag cctaccttct 6060 tcagtgggct ctctaatctg ccattctccg tcttggccga tccatccttc cctcattagt 6120 gtcaccacta agctcccccg ctccttcagc aagagccgtc ttcgcgacgt taaagcgatt 6180 c 6181 //