ID AY787207; SV 1; linear; mRNA; STD; VRL; 2816 BP. XX AC AY787207; XX DT 14-NOV-2004 (Rel. 81, Created) DT 14-NOV-2004 (Rel. 81, Last updated, Version 1) XX DE Barley stripe mosaic virus segment RNA3, complete sequence. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-2816 RA Sun X., Qiu B., Li Y.; RT "Barley stripe mosaic virus (China strain)"; RL Unpublished. XX RN [2] RP 1-2816 RA Sun X., Qiu B., Li Y.; RT ; RL Submitted (19-OCT-2004) to the INSDC. RL Department of Molecular Virology, Institute of Microbiology, Chinese RL Academy of Sciences, Zhongguancun Beiyitiao No.13, Haidian District, RL Beijing 100080, P.R. China XX DR MD5; 1bd8b1d8c0c59375c8a2908ea23dbe28. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX FH Key Location/Qualifiers FH FT source 1..2816 FT /organism="Barley stripe mosaic virus" FT /segment="RNA3" FT /strain="China" FT /mol_type="mRNA" FT /db_xref="taxon:12327" FT CDS 90..2036 FT /codon_start=1 FT /product="RNA-directed RNA polymerase" FT /db_xref="GOA:Q5S2C7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5S2C7" FT /protein_id="AAV54032.1" FT /translation="MDVVKKFAVMSVTVAAGPVLTPSPVVVTFGTGLIAVSLVKRLLQE FT QPRVITYDHEHCPGGSESNSSSCATAPTLRNLSQNQCDSGNIGCNSSACSPSEVVKVTR FT QVVEVERGLYRDIFQDNEIPSVMEEKLQKLLYSEGEKIRRRCQFEASAMHSRKVKVPEV FT GTIPDIQTWFDATFPGNSVRFSDFDGYTVATEDINMDVQDCRLKFGKTFRPYEFKESLK FT PALRTAMPERRQGSLIESVLAFRKRNLAAPRLQGALNEWHTIENVLKKALKVFFFEDLI FT DRTDHCTYESALRWWDKQSVTARAQLVADQRRLCDVDFTTYNFMIKNDVKPKLDLTPQV FT EYAALQTVVYPDKIVNALFGPIIKEINERIIRALRPHVVFNSRMTADELNETVAFLTPH FT KYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQFQTYVKDRNFGLEA FT YLLYQQKSGNCDTYGSNTWSAALALLDCLPLEDAHFCVFGGDDSLILFDQGYIISDPCR FT QLAGTWNLECKVFDFKYPAFCGKFLLCIDGKYQFVPDAAKFITKLGRTDVRDVDVLSEI FT YISINDNYKSYKDFKVLDALDKALVDRYRSPYSAISALVSLCYHIFDFNKFKLLFNCEG FT KFVDKKLRKDFEW" FT CDS 2079..2540 FT /codon_start=1 FT /product="gamma b protein" FT /db_xref="UniProtKB/TrEMBL:Q5S2C6" FT /protein_id="AAV54031.1" FT /translation="MMATFSCVCCGTLTTSIYCGKRCERKHVYSETRNKRLELYKKYLL FT EPQKCALNEIVGHSCGMLCSIAEEACDRLPIVSKFCGQKHADLHDSLLKRSEQELLLEF FT LQKKMQELKLSHIVKMAKLESEVNTIRESIVSSCEDSVGCDDSSSVSKL" XX SQ Sequence 2816 BP; 819 A; 525 C; 658 G; 814 T; 0 other; gtatagcttg agcattaccg tcgtgtaatt gcaacacttg gcttaccaaa taacgctaaa 60 gcgttcgcga aacaaatcaa aaccttggca tggatgttgt gaagaaattc gccgtcatgt 120 cagtgactgt agcagcaggt cccgtcctta cgccctcacc tgtggtggtg acgtttggaa 180 caggcttaat tgccgtatct ttggtgaaac ggttgctaca ggaacaaccc cgtgtaatta 240 cttacgatca cgaacactgc ccaggtggtt ctgagagcaa ttctagctct tgtgctaccg 300 cgcctactct gcgtaatctc tcgcaaaatc agtgcgattc agggaacatt ggatgcaatt 360 ctagcgcctg ttctccgtct gaagttgtga aagttacaag gcaggtggtg gaagttgagc 420 gtggtcttta ccgggacatt tttcaggaca acgaaatacc atcagtcatg gaagagaaac 480 tccagaaact gctttactca gagggtgaga agattcgaag acgttgtcaa tttgaagcat 540 cggcgatgca ctcacgcaaa gtaaaggttc cggaggtagg tactatccca gatatccaaa 600 cttggttcga tgctacgttt cctggtaatt ccgttaggtt ttctgacttc gacggttata 660 ctgtcgctac ggaagacatt aacatggatg ttcaggattg taggcttaag ttcgggaaga 720 cttttcgacc ttatgaattt aaggaatcac tgaagccggc actgaggaca gcaatgccag 780 aaaggcgaca gggtagtttg attgaaagtg tgctggcctt tcgtaaaaga aatttggctg 840 cgcccagatt gcagggagct ttgaatgaat ggcatacaat tgaaaatgtg ctgaagaagg 900 cgttaaaggt attcttcttt gaagatttaa ttgatcggac ggatcattgc acttacgagt 960 cagcactcag atggtgggat aaacaatcag taacagcccg agcacagctt gtggcggacc 1020 aacggaggtt atgtgatgtt gacttcacga cttacaattt catgataaaa aatgatgtaa 1080 agccgaagtt agatctaaca cctcaagttg aatatgcagc tttgcagact gttgtgtatc 1140 ctgataagat agttaatgcc ctcttcggtc cgatcataaa agaaattaat gaacggatta 1200 tcagagcgct tagaccgcat gtggtcttta attctcgtat gactgctgat gaactgaatg 1260 aaacagttgc ctttttgaca cctcacaagt acagagcctt agagattgac ttttcaaaat 1320 ttgacaaatc aaagactggg cttcatatca aagctgtcat tggactctac aagctctttg 1380 gcctagatgg cctgttgaaa gtactctggg agaaatcgca atttcagact tacgtgaaag 1440 acagaaactt cggtctcgaa gcatatctat tatatcagca aaagtcagga aactgcgaca 1500 cttacggttc gaacacctgg tctgccgcct tggcgttact agattgtctt cctttggaag 1560 atgcgcattt ctgtgttttt ggtggtgatg attcattgat attgtttgat caggggtaca 1620 taatttccga cccttgccgg caacttgccg gtacttggaa ccttgaatgt aaagtgttcg 1680 actttaagta ccccgcattt tgtggtaaat ttctgctgtg tatcgatgga aaatatcagt 1740 ttgttccgga tgcagcaaag tttatcacaa aattaggtag aactgacgtg agagatgtag 1800 acgttctgag tgagatttat atctctatca atgacaacta caaatcttac aaagacttta 1860 aggtacttga tgctttggat aaggcgttag tagacagata tcgatcccca tatagtgcta 1920 tttctgcttt ggtttctttg tgttatcata tctttgactt taataagttt aagttgctgt 1980 ttaattgtga agggaaattt gtggataaga agctgagaaa ggacttcgag tggtgaactc 2040 tagggcctga tgtttaaatc tactgtattt accttcgcat gatggctact ttctcttgtg 2100 tgtgttgtgg taccttaact acgagtatct attgtggtaa gagatgtgag cgaaagcatg 2160 tatattctga aacgagaaat aaaagattgg aactttacaa gaagtattta ttggaaccgc 2220 aaaaatgcgc cctgaatgaa atcgttggac acagttgtgg aatgctatgc tccattgcgg 2280 aagaggcttg tgatcggctg ccaatcgtga gtaagttctg tggccaaaag catgcggatc 2340 tgcatgattc acttctgaaa cgttctgagc aggagttact tcttgaattt ctccagaaga 2400 agatgcagga gctgaaactt tctcatatcg taaagatggc taagcttgaa agtgaggtta 2460 acacaatacg tgagtccata gtttcttctt gcgaagattc tgttggatgt gatgactctt 2520 cttctgtttc taagttgtaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaatgt 2580 ttgatcagat catacaaatc tgatggtgcc catcaaccat atgatgggag tgtttacaag 2640 tccactataa tcgaacttga aaaaccctgc ctgaattgga aaccatgaat cttaacggat 2700 tctggagaga aaatttagga attggtatgt aagctacaac ttccggtagc tgcgtcacac 2760 tttaagagtg tgcatactga gccgaagctc agcttcggtc ccccaaggga agacca 2816 //