ID AY765254; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AY765254; XX DT 01-OCT-2005 (Rel. 85, Created) DT 28-OCT-2005 (Rel. 85, Last updated, Version 2) XX DE Cotton leaf curl Rajasthan virus - [Sirsa:04] segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl Rajasthan virus - [Sirsa:04] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2739 RA Radhakrishnan G., Padmalatha K.V., Varma A., Malathi V.G.; RT "Complete nucleotide sequence of Cotton Leaf Curl Virus isolated from RT Sirsa, Haryana, India (Sirsa-CLCuV-A)"; RL Unpublished. XX RN [2] RP 1-2739 RA Radhakrishnan G., Padmalatha K.V., Varma A., Malathi V.G.; RT ; RL Submitted (25-SEP-2004) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi, India XX DR MD5; d1d4d46c3e1c51b75d59b76891c958cf. DR EuropePMC; PMC5727119; 29234082. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Cotton leaf curl Rajasthan virus - [Sirsa:04]" FT /segment="DNA-A" FT /mol_type="genomic DNA" FT /country="India:Sirsa, Haryana" FT /note="Sirsa-CLCuV-A" FT /db_xref="taxon:352884" FT gene 117..482 FT /gene="AV2" FT CDS 117..482 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:Q3L1B7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q3L1B7" FT /protein_id="AAX84749.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 277..1047 FT /gene="AV1" FT CDS 277..1047 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q3L1B6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3L1B6" FT /protein_id="AAX84750.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1050..1454) FT /gene="AC3" FT CDS complement(1050..1454) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q3L1B5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3L1B5" FT /protein_id="AAX84753.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY" FT gene complement(1147..1599) FT /gene="AC2" FT CDS complement(1147..1599) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:Q3L1B4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3L1B4" FT /protein_id="AAX84752.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1496..2584) FT /gene="AC1" FT CDS complement(1496..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:Q3L1B3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3L1B3" FT /protein_id="AAX84751.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAAFNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFNQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTTQGSEEAQQEEESRS" FT gene complement(2092..2430) FT /gene="AC4" FT CDS complement(2092..2430) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q3L1B2" FT /protein_id="AAX84754.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRNWLLR FT ILYCNFII" XX SQ Sequence 2739 BP; 724 A; 559 C; 622 G; 834 T; 0 other; accggatggc cgcgcgattt tttttgtggg cccccgattt atgagattgc tccctcaaag 60 ctaaataacg ctcccgcaca ctataagtac ttgcgcacta agtttcaaat tcaaacatgt 120 gggatccact attaaacgaa ttccctgata cggttcacgg gtttcggtgt atgctttctg 180 tgaaatattt gcaacttttg tcgcaggatt attcaccgga tacgcttggg tacgagttaa 240 tacgggattt aatttgtatt ttacgctccc gtaattatgt cgaagcgagc tgccgatatc 300 gtcatttcta cgcccgcgtc gaaagtacgc cggcgtctga acttcggcag cccatacacc 360 agccgtgctg ctgcccccat tgtccgcgtc acaaaacaac aggcatggac aaacaggcct 420 atgaacagga agcccagaat gtatcggatg tacagaagtc cggatgttcc aaagggttgt 480 gaaggcccat gtaaggtaca atcttttgag tcgagacatg atgtcgttca tattggtaag 540 gtaatgtgta tttctgatgt tactcgtggt gtcggtttga cccatcgtat tggtaaacgt 600 ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa tataaagacc 660 aagaatcaca cgaattcggt gatgttcttt ttagtccgcg atcgacgtcc tgttgacaaa 720 cctcaggatt ttggtgaggt attcaatatg tttgacaacg aacctagtac agcaactgtg 780 aagaatagtc atagggaccg ttaccaggtg ttgaggaaat ggcatgcaac cgttacgggt 840 ggtcaatatg ctagtaagga acaagctttg gtcaagaagt ttgtcagagt taacaattat 900 gttgtttaca atcaacagga agcagggaaa tacgagaatc atacggaaaa tgcgttaatg 960 ctttatatgg cttgtactca cgctagcaac cctgtttatg ctacgttgaa gattaggata 1020 tatttttatg actctgtaac gaattgatat taataaagtt tgaattttat ttctgaatat 1080 tgatctacat acatagtttg ttggattaca ttgtacaata catgttctac agctttaata 1140 actaaattaa ttgaaattac accgagattg ttcagatatt tgaggacttg ggttttgaat 1200 acccttaaga aaagaccagt ctgaggctgt aaggtcgtcc agattcggaa tgttagaaaa 1260 cacttgtgca gtcccagagc tttccgagtg ttgtagttga actggatcct gatcgtgagt 1320 atgtccatat tcgtcgtgaa tggacggttg acgtggctga tgatcttgaa ataaagggga 1380 tttggaacct cccagatata tgcgccattc cctgcttgag ctgcagtgat gggttcccct 1440 gtgcgtgaat ccatggttgt ggcagttgat tgacagataa taagaacacc cgcattcaag 1500 atctactctc ctcctcctgt tgcgcctctt cgcttccctg tgttgtactt tgattggtac 1560 ctgagtacat gggtctatca agtgtgatga agatcgcatt ctttaaagcc caatttttta 1620 gtgcagaatt cttctcttca tccaaaaact ctttatagct tgaattgggt cctggattgc 1680 agaggaagat agtgggaatt ccgcctttaa tttgaactgg cttcccgtat tttgtatttg 1740 attgccagtc cttttgggcc cccatgaact ccttaaagtg ctttaggtaa tgcgggtcga 1800 cgtcatcaat gacgttaaac caggcgtcat tactgtatac ccttgggctc agatctagat 1860 gtccacacag ataattatgt ggacctaatg atctggccca catcgtcttc cccgtcctac 1920 tgtcaccctc aatcactaca cttattggtc tattggcccg cgcagcggca ctgacgacgt 1980 tctcggcagc ccacacttca agttcttctg gaacttgatt gaaagaagaa gaggaaaaag 2040 gagaaacata aggagctggt ggctcctgaa agattctgtc tagatttgca tttaaattat 2100 gaaattgcag tacaaaatcc ttaggagcca gttccttaat gactctaaga gcctccgact 2160 tacttcccgc gttaaatgct gcggcgtaag cgtcattggc tgtctgttgc cctcctcttg 2220 ctgaccttcc gtcgatctga aattgccccc agtcgagaat gtccccgtcc ttctcgatgt 2280 aggatttgac gtcggagctg gatttagctc cctgtatgtt cggatggaaa tgtgctgacc 2340 tgcttgggga gaccaagtcg aagaatcgca tattctggca cttgaatttc ccttcgaact 2400 ggatgagaac atgcaagtga ggagtcccat cttcgtgaag ctctctgcag attctaatat 2460 atttttttga agttggggtt tgtatattta ataattggga aagtgcttcc tctttggtga 2520 gagagcattt gggataagtg atgaaatagt ttttggaata aataccgttc cgctttggag 2580 gcatgttgac taaaattgat caccgattga ccgctcttgc aactctcccc ggtatatcgg 2640 tgatcaatat atagtgatca ccaaatggca taatggtaat aaaaaacctt taatttgaaa 2700 ttcaaaccaa aaggctaaag cggccatccg tttaatatt 2739 //