ID AY765253; SV 1; circular; genomic DNA; STD; VRL; 2725 BP. XX AC AY765253; XX DT 01-OCT-2005 (Rel. 85, Created) DT 28-OCT-2005 (Rel. 85, Last updated, Version 2) XX DE Cotton leaf curl Multan virus - [Hissar:04] segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl Multan virus - [Hissar:04] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2725 RA Radhakrishnan G., Padmalatha K.V., Varma A., Malathi V.G.; RT "Complete nucleotide sequence of Cotton Leaf Curl Virus isolated from RT Hissar, Haryana, India (Hissar-CLCuV-A)"; RL Unpublished. XX RN [2] RP 1-2725 RA Radhakrishnan G., Padmalatha K.V., Varma A., Malathi V.G.; RT ; RL Submitted (25-SEP-2004) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Road, New Delhi, Delhi, India XX DR MD5; 97eb07f4dd07424a11395b8147a42d30. DR EuropePMC; PMC6451280; 30954067. XX FH Key Location/Qualifiers FH FT source 1..2725 FT /organism="Cotton leaf curl Multan virus - [Hissar:04]" FT /segment="DNA-A" FT /mol_type="genomic DNA" FT /country="India:Hissar, Haryana" FT /note="Hissar-CLCuV-A" FT /db_xref="taxon:352883" FT gene 117..473 FT /gene="AV2" FT CDS 117..473 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:Q3L1C3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q3L1C3" FT /protein_id="AAX84743.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT gene 277..1047 FT /gene="AV1" FT CDS 277..1047 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q3L1C2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q3L1C2" FT /protein_id="AAX84744.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTLR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1147..1599) FT /gene="AC2" FT CDS complement(1147..1599) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:Q3L1C1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q3L1C1" FT /protein_id="AAX84746.1" FT /translation="MRSSSLSKDPCTQVPVKVQHREAKRRNRRRRVDLECGCFYYLSIN FT CHNHGFTHRGTHLCSSSREWRIYLGGSKSPLSQDHQPRQPSIHDEYGYTHDQDPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNLSPQISEQSRCNFN" FT gene complement(1188..1454) FT /gene="AC3" FT CDS complement(1188..1454) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q3L1C0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3L1C0" FT /protein_id="AAX84747.1" FT /translation="MDSRTGEPISAAQAGNGAYIWEVPNPLYLKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKT" FT gene complement(1496..2581) FT /gene="AC1" FT CDS complement(1496..2581) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:Q3L1B9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q3L1B9" FT /protein_id="AAX84745.1" FT /translation="MPRDLKTNAKNYFLTYPKCSLTKEETLSQLLNLHTPVNKKYIKIC FT RELHQNGEPHLHVLIQFEGKYQCTNKRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYIDK FT DGDTLEWGQFQIDGRSARGGQQTANDAYAAALNAGNKSEALRVIKELAPKDFVLQFHNL FT NANLDRIFQEPPAPYISPFSSSSFDQVPEELEVWAIDNVVDPAERPLRPRSIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQS FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKDTALKNWAVKNAIFIALEGPLYS FT GTSQSTAQGSEETQQEEESRS" FT gene complement(2128..2430) FT /gene="AC4" FT CDS complement(2128..2430) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q3L1B8" FT /protein_id="AAX84748.1" FT /translation="MGNLIFTCSSSSRGSTNARIKDSSTWYPQPGQHISIRTFRELNQA FT QMSRPTSTRTGTLSSGDSFRSMEDQQEEDNRQPTTLTPQHLTQAISQRLLESLRN" XX SQ Sequence 2725 BP; 693 A; 540 C; 653 G; 839 T; 0 other; accggatggc cgcgcgattt tttttgtggg cccccgattt atgagattgc tccctcaaag 60 ctaaataacg ctcccgcaca ctataagtac ttgcgcacta agtttcaaat tcaaacatgt 120 gggatccact attaaacgaa ttccctgata cggttcacgg gtttcggtgt atgctttctg 180 tgaaatattt gcaacttttg tcgcaggatt attcaccgga tacgcttggg tacgagttaa 240 tacgggattt aatttgtatt ttacgctccc gtaattatgt cgaagcgagc tgccgatatc 300 gtcatttcta cgcccgcgtc gaaagtacgc cggcgtctga acttcggcag cccatacacc 360 agccgtgctg ctgcccccat tgtccgcgtc acaaaacaac aggcatggac aaacaggcct 420 atgaacagga agcccaggat gtacaggatg tacagaagtc cagatgttcc tagaggatgt 480 gaaggtccat gtaaggttca gtcgtttgag tccagacatg atattcagca tataggtaaa 540 gtaatgtgtg ttagtgatgt tactcgtggt actgggctga cccttagagt tggtaagaga 600 ttttgtgtca agtctgttta tgtgttgggt aagatatgga tggatgagaa cattaagacg 660 aagaatcaca cgaatagtgt gatgtttttc ttggttagag atcgtagacc tgttgataaa 720 cctcaagatt ttggagaggt atttaatatg tttgataatg agcccagtac ggcgactgtg 780 aagaatgttc atcgtgatag gtatcaagtt ctgcgcaaat ggtatgcaac tgtcaccggt 840 ggacaatacg cttcaaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat 900 gttgtttaca atcaacagga agcaggaaaa tacgagaatc atacggaaaa tgcgttaatg 960 ctttatatgg cttgtactca cgctagcaac cctgtttatg ctacgttgaa gattaggata 1020 tatttttatg actctgtaac gaattgatat taataaagtt tgaattttat ttctgaatat 1080 tgatctacat acatagtttg ttggattaca ttgtacaata catgttctac agctttaata 1140 actaaattaa ttgaaattac accgagattg ttcagatatt tgaggactca ggttttgaat 1200 acccttaaga aaagaccagt ctgagggtgt aaggtcgtcc agattcggaa ggttagaaaa 1260 cacttgtgca gtcccagagc tttccgagtg ttgtagttga actggatcct gatcgtgagt 1320 atatccatat tcgtcgtgaa tggacggttg acgtggctga tgatcttgag atagagggga 1380 tttggaacct cccagatata tgcgccattc cctgcttgag ctgcagagat gggttcccct 1440 gtgcgtgaat ccatggttgt ggcagttgat tgacagataa taaaaacacc cgcactcaag 1500 atctactctc ctcctcctgt tgcgtctctt cgcttccctg tgctgtactt tgactggtac 1560 ctgagtacag gggtccttcg agagcgatga agatcgcatt ctttactgcc cagtttttta 1620 gtgcggtgtc cttttcctcg tctaggaatt ctttataact gctgttggga ccaggattgc 1680 agaggaagat tgttggtatc ccgcctttaa tttgaactgg cttcccgtac tttgtgttgg 1740 attgccagtc cctttgggcc cccatgaact ctttaaagtg tttgaggaaa tgcgggtcga 1800 cgtcatcaat gacgttatac caggcgtcgt tactgtagac cttgggactc agatccagat 1860 gtccgcacaa atagttatgt ggtcccagtg atctagccca catcgtcttt cccgttcgac 1920 tatctccttc aattactata ctccgaggtc taaggggccg ctcagcggga tcgacaacgt 1980 tatcgatggc ccaaacttca agttcttctg gaacctgatc gaaagaagaa gaagaaaaag 2040 gagaaatata gggagccggt ggctcctgaa agattctgtc tagatttgca tttaaattat 2100 gaaattgtag tacaaaatct ttaggagcta gttccttaat gactctaaga gcctctgact 2160 tattgcctgc gttaagtgct gcggcgtaag cgtcgttggc tgtctgttgt cctcctcttg 2220 ctgatcttcc atcgatctga aactgtcccc actcgagagt gtccccgtcc ttgtcgatgt 2280 aggccttgac atctgagctt gatttagctc cctgaatgtt cggatggaaa tgtgctgacc 2340 tggttgggga taccaggtcg aagaatcttt tattcgtgca ttggtacttc ccctcgaact 2400 ggatgagcac gtgaagatga ggttccccat tttggtgaag ctctctgcag atcttgatgt 2460 attttttgtt tactggtgta tgtaggttta gtaattggga gagggtttct tctttagtta 2520 gagagcattt gggataagtg aggaagtagt ttttggcgtt tgtttttaaa tcacgtggca 2580 ttttggcaat cggtgtacac tctaattcta tggcaatcgg ggtaacgggg tgcaatttat 2640 aggtgtaccc caaatggcat tatcgtaatt tgagaaatca tttcaaaatc ctcacgctcc 2700 aaaaagcggc catccgttta atatt 2725 //