ID AY764390; SV 2; linear; mRNA; STD; VRL; 7030 BP. XX AC AY764390; XX DT 02-MAR-2005 (Rel. 83, Created) DT 24-JUN-2005 (Rel. 84, Last updated, Version 4) XX DE Cherry rasp leaf virus segment RNA-1, complete sequence. XX KW . XX OS Cherry rasp leaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Cheravirus. XX RN [1] RP 1-7030 RX DOI; 10.1007/s00705-005-0503-3. RX PUBMED; 15789268. RA James D., Upton C.; RT "Genome segment RNA-1 of a flat apple isolate of Cherry rasp leaf virus: RT nucleotide sequence analysis and RT-PCR detection"; RL Arch. Virol. 150(7):1469-1476(2005). XX RN [2] RP 1-7030 RA James D., Upton C.; RT ; RL Submitted (27-SEP-2004) to the INSDC. RL Biochemistry and Microbiology, University of Victoria, 150 Petch Bld, RL Victoria, BC V8W 3P6, Canada XX RN [3] RC Sequence update by submitter RP 1-7030 RA James D., Upton C.; RT ; RL Submitted (21-MAR-2005) to the INSDC. RL Biochemistry and Microbiology, University of Victoria, 150 Petch Bld, RL Victoria, BC V8W 3P6, Canada XX DR MD5; fdd44247907e1e653365d4cfd49c9693. XX CC On Mar 21, 2005 this sequence version replaced gi:59726920. XX FH Key Location/Qualifiers FH FT source 1..7030 FT /organism="Cherry rasp leaf virus" FT /segment="RNA-1" FT /strain="Flat Apple" FT /mol_type="mRNA" FT /country="Canada" FT /db_xref="taxon:202566" FT CDS 143..6850 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1; includes pro-co, helicase, c-pro, and RdRp; FT CRLV-FA-ORF1" FT /db_xref="GOA:Q5DIW8" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q5DIW8" FT /protein_id="AAW92113.2" FT /translation="MGIYTLCSCGTPCPTRSFYRRHMASGCDLLPTRQQLVDAGYVEPA FT VIAEVVIPPTTAEVVTPPTIVEVVTPPAVVVEISPPAATQFVDIGALVASGPCFFGSFG FT PFEEYYSSPIFPLSKWENLRREGAIRARANVRAAAARLQETEETLRATAESARALLPLW FT MRGLVAPPQKSKRALKREAQAKAKAAFLASDEAYYKATDGLTALPPGVARDAHMRQLDA FT MEVAYLAHVGDVAARGFQRRQALRAAYKARCEKRAFKCFLEEVDFLCLPVHIVDKIQTP FT FDGEQAAAPEMQKGVVHATSRRQVKTRRSFSSFLPKEDFSFTLGICPARSPTVTPSSTP FT SSSRSSSPEPRVSSPTGVLPEKAACISVCSHGSNCTEQFCFGFLDLKNEALASQYLAWL FT LQTKLPGDISCFELEVSPYLEQCQDTMEAIDLWWHAMDRYCFNFKSNKYIILDNFLCKR FT SIARDQTPREFLAKHRIAKAKALHRVPSRKEKMQALCEQRADKAWDAYVELNKNCKVGE FT GPLEYLKAAKDRCVEFFSPFTKYCNEAIRSLNPLVAILGPFKDGFWTCFNNLREKCLKM FT VNDHWLAFAAGTTLVLSLIFLLCIICLVKIFSILIANLGLGVVAITTLVTALVVGFFLL FT NGMLEQAADLQLCSLVASDFLNFLAQNQGSTLVAGTMASVQDDLRGQGVSWCFSALYKL FT ISRVVPVGIKETSILFNSIGSISRSANHSKDFFLNMKEMACSWMDALSDAMALISDDSV FT SAMQVLKHLCEHDFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYN FT PRIASKAPRLMLTEFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMA FT MMPLGNYMLDAIGEPKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTML FT DLVSPNALTLNMAAIGEKNTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEV FT VLVSGKPHFHEFNLLAPRTEQKVYLNRAMQESQVPDPLTPQEFYSLCTENFVNFLNQQS FT STVAISAGLNYVRSSDFSHLKDFLLFKIGLDFEENEVERIVTDYGNSLKNETIFPPEHE FT QIFQKWKDALDSLTLPELVSLLDKSVSETFVYTLISENHPNVVMSSLTPYECMIYAICK FT KKYREGTEAKLPFPEGETTSYGASFLSFVAQVALCIPKWALFCVALCAVLLVGYLIIKF FT AIFLFSGAVTLLGALAFSNLSGDGAEDSPSFDTNRKRGGVKFEYSTKWDAPSANRFAES FT YSENGTIPAGTSWADFFGEGPEEEPSQSLLNLLKHQVVLIAEPTKVVYNCIALGGRNFL FT ITKHVWDLMPACNYGLYGYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLP FT RDIFLENMAKAPKTANACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLG FT SKQMPACYSYVFETYAGLCTSPLIAQEGGRCIILGLHVVGDRSKMGYAQIVTLDDFSDV FT ALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTTLIPSLISTSIDVERT FT TEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSLDEDLEVFEDALDRVFLEIPEH FT ACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGASGKSWLFAGAPGDWHIVP FT GSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKPKTRLFTILPVDYNILV FT RKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTNWFNGDYSRFDGITPR FT NVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTRYGLTNGDLWYVTSG FT IPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSV FT NDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQGHVV FT APLNPVNITERLHWIRKGLGEADATLENCSSAAFEALFHGRCYYDTLVAKIYKACAASK FT LSIQLPTYNDALAIFLSNDSFAKAIQTISLDLPKAIFVNKSNYFVSEIFPDVFFCSNER FT NVTLHKLLEITTTRNICYISRNYESRNSSRGLFSLKGEGWALAPVSARLVVYKNMQKPV FT YFVDEANDGLALAYCLDYMLRIKGVSRSRLAQVLYNIFGHDETLCSRIASNFSLLDSNK FT YVPPHKK" XX SQ Sequence 7030 BP; 1790 A; 1426 C; 1596 G; 2218 T; 0 other; cgttttagag cttggcaatt gttgttgtct gttgttgttg ttgtttgtta tctcttattg 60 cgatccttca gttactttgt tgtcattctc taccgtcaaa ctttattttg ttgaaattta 120 aattttgaat tttaatttct ctatgggtat ttataccctt tgctcttgtg ggactccttg 180 tcccacacgt tctttttacc ggaggcatat ggcctctggc tgtgatttgc tgcctactag 240 gcagcaactt gttgatgctg gctatgttga gccagcagtt attgctgagg tggttattcc 300 acctactact gctgaggtgg taaccccacc tactatcgtt gaggtggtaa ccccacccgc 360 tgttgtcgtg gagatctctc cacctgctgc cacacagttt gtggacattg gggcacttgt 420 tgcctcaggc ccttgcttct ttggaagctt tgggcccttt gaggagtatt actcctcccc 480 tatttttcca ctttctaagt gggaaaatct gaggcgcgag ggcgccattc gagctcgcgc 540 taacgtgcga gcagctgctg cccgtctgca agagacggaa gagacgctta gggcgactgc 600 tgaatctgca cgggctctgt tgcccctgtg gatgaggggt cttgtggccc ctccccaaaa 660 atccaaacgc gcactaaagc gcgaagccca ggctaaggct aaggctgctt tcttggcctc 720 tgatgaggcc tactataagg ctactgatgg ccttactgct cttccccctg gtgttgccag 780 ggatgcccat atgcgtcaac tggacgctat ggaggtggct tatctcgccc atgtgggaga 840 tgtggccgct cgcggttttc aacgccgcca ggctctgcga gctgcctata aagctcgatg 900 tgaaaagcgc gcttttaagt gctttttgga ggaagttgat ttcctctgtc tcccagtcca 960 catagtggac aaaatccaaa cccctttcga tggggaacag gctgctgcac ctgaaatgca 1020 gaagggggtg gttcatgcta cttcccggcg gcaggtgaaa acccgccgct ccttctcctc 1080 tttcctccct aaggaggatt tctcttttac tttgggtatt tgccctgcga ggtcacctac 1140 ggtgacccca agttccactc cctcttcttc ccggagttcc tccccggaac ctcgggtttc 1200 ttcccctact ggggtgctgc ccgaaaaggc agcatgtata agtgtgtgct cccatgggag 1260 caattgtaca gaacaatttt gttttggttt tcttgacttg aagaatgagg cacttgcctc 1320 acaatatctt gcttggctcc tgcaaacaaa actgcctgga gatatctcat gctttgagct 1380 tgaggtctct ccctatttag agcagtgtca agataccatg gaggccatcg atttatggtg 1440 gcatgctatg gatagatatt gcttcaattt taagagtaat aaatacatta ttttagataa 1500 tttcctttgc aagcgttcta ttgcaagaga ccagactcca agagagtttt tggccaagca 1560 taggatagca aaagcaaagg ctttgcacag agttccctcg cgtaaagaga agatgcaagc 1620 tttgtgtgag caaagggctg ataaggcctg ggatgcttat gttgagctta ataaaaattg 1680 taaagtaggc gagggacctt tagagtacct gaaggctgcc aaggacaggt gcgtggagtt 1740 cttttctcca ttcacaaagt attgtaatga ggccattcga tcacttaacc ccctggttgc 1800 cattctggga cctttcaagg atggtttttg gacttgtttc aacaacctcc gcgaaaagtg 1860 tctcaaaatg gtcaatgatc attggctagc atttgcagca ggtactactt tagtactttc 1920 tttaattttt cttctgtgta taatttgttt agtaaaaatt ttttccattt taatagcaaa 1980 cctagggcta ggtgttgttg ctataacaac actcgttaca gctctagttg tagggttttt 2040 ccttctcaac gggatgcttg agcaggctgc agacttgcaa ctatgctctc ttgtcgcctc 2100 ggatttcttg aatttcctag cgcagaacca gggttccact ttagttgctg gaaccatggc 2160 atctgtgcag gatgacctga gaggacaggg tgtctcctgg tgcttctctg ctctgtataa 2220 actaattagc agagtagtac cagtgggcat aaaagaaact agcattcttt ttaactctat 2280 aggtagtatt agtcgtagtg ctaatcattc taaggatttt tttctaaata tgaaggaaat 2340 ggcctgctct tggatggatg ctctctctga tgctatggca ctcatatctg atgattctgt 2400 atcagctatg caagtgctta agcatctttg tgagcatgac ttcctggatt gggccaagaa 2460 ggttgagcga tatgctgggg agacttatga tagtttgatc attagtccag cagagcgact 2520 caaaatcctt agaatattag ctgaccaaca agaaagcttt cagaaagctt tctataaccc 2580 taggatagct agtaaggcac cacggcttat gcttactgag ttcaatcgtt tgtcgacgtt 2640 actgagggat gctcataatg ctttatctag agcatctctt tttgaccgac aacgaactcc 2700 acctttctgg gtgcatttgt actcagaaaa tggaggaact ggtaagtcca tggctatgat 2760 gcctttagga aattacatgt tagatgctat tggggaacct aaaacctgca ggtttgtcac 2820 taggaatgta gcctccaaat ttttgaatgg ctaccagcac cgaccttgtt ttttgatgga 2880 cgagtttggt gctgccccaa agcaggacta tagcgatgaa gtgacgatgc ttgatttggt 2940 ttccccaaat gctctgacat taaatatggc ggccattggg gagaagaata ctatgttcac 3000 ttcaaagctt attatttcca cagctaaccg tagattagca catcccgatg tcaagttggg 3060 agctaactta gatggattct tgcggcggag gaatatcctt gcagaggttg ttcttgtgag 3120 tggtaaaccc cattttcatg agttcaatct actggcgcct cgtacggagc agaaggttta 3180 cttaaaccgc gccatgcagg aaagccaggt ccctgaccct ctaacgccgc aagagttcta 3240 ttctttatgt acagaaaatt ttgttaattt tttaaaccag cagagtagta cagttgccat 3300 atctgctggt cttaattatg tgcgctcctc tgacttctct cacctcaagg acttcctatt 3360 gttcaaaata gggctggact ttgaggagaa tgaagttgag aggattgtca ctgactatgg 3420 caattcttta aagaatgaga ctatttttcc tccagagcat gaacagattt tccaaaaatg 3480 gaaagatgct ctggatagtc tcactcttcc tgagttagtt tctttattag ataagtcggt 3540 ttcagagact tttgtatata ccttaatctc tgaaaaccat cctaacgtag ttatgagtag 3600 tctaacccct tacgagtgca tgatttatgc tatttgtaag aaaaagtata gagaaggaac 3660 agaggcaaag cttccgtttc ctgaaggaga gaccacaagt tatggtgcct cctttctttc 3720 atttgttgcc caagtagctt tgtgtatacc caaatgggca cttttttgtg tagctttatg 3780 tgcagtttta cttgtaggat atttaattat taaatttgct atttttcttt ttagtggggc 3840 tgtcaccttg ctgggtgctt tagctttcag caatttgagt ggagatggcg ctgaggattc 3900 accatcattt gacaccaacc gtaaacgcgg aggtgttaaa tttgaataca gcaccaagtg 3960 ggatgcccca agtgccaacc gttttgcaga gagttattct gaaaatggca ccatcccagc 4020 tggaacttct tgggcagact tctttggaga aggacctgag gaggaaccta gccagtctct 4080 acttaacttg cttaagcacc aagtggtcct gatagctgaa cccactaaag ttgtgtataa 4140 ttgtatagcg ctaggtggta ggaatttttt aataacaaaa catgtttggg acctcatgcc 4200 agcttgtaac tatggattgt atggctatgc ggttgccaaa gataagattt ttattggtcc 4260 taggattaga ccatgtgcac aattgaaagg gcgggactta gttattgttc agttacccga 4320 ctcagttccg ccctttactt cgttacctag ggatatcttc cttgaaaaca tggctaaggc 4380 tcccaagaca gctaacgctt gtcttgtcgt agctaaacct ttgtttgaaa ggcgatcagt 4440 tgctaagctt gaacagacaa tttatccatt caagcaactg ccacaagtgc attcgaaaga 4500 cacatactct tgtggatcgt taggttcgaa acagatgcca gcatgttatt catacgtttt 4560 tgaaacttat gctggtttgt gcacatcccc cttgattgca caagaagggg gtagatgtat 4620 tatattaggt ttacatgttg taggagatag atctaagatg gggtatgcac agatagttac 4680 ccttgatgat tttagtgatg ttgctctcag tgataaggtc ggtcaaggcc cggaggaaat 4740 gtatatacct acaaaaaact ctgagtgctt tggatccgtt accaagttgg gagcttggac 4800 tggtcccaag ccttattttc ttgagaagac aacactaata ccatctctta tttctacgag 4860 tatagatgtg gaaagaacta ctgaacctgc catcctctcc cagcgagaca aacgacttaa 4920 ggacagcata aatcctgagt ttgatgtctt cctcgagggg atgaaaaaat atgcagtgga 4980 ggctcactcg ctggacgaag atctggaggt gtttgaggac gccctagatc gagtcttttt 5040 agagattcct gagcatgctt gtgaagatct aactaatgat caagtgtgca acgggattga 5100 ggatgatccc tacgctgaag gcattgtcat gcaaactgct gagggttttc ccttttgcac 5160 ccagcgtcca gctggtgcta gtggaaaatc ttggctgttt gctggtgctc ctggtgattg 5220 gcatatcgtt cctggctctt tgttagcaaa cgaaatgcac aagaaggagg ttgctcttag 5280 caggggcttg tttgagcctt tgattggtat tgactttccc aaggatgaga aggtagattc 5340 gtctaaagtg tatataaaac ctaagacgcg tctgttcacc atccttcctg tagattataa 5400 tattttagtt agaaaatatt ttctttcttt tgtgtcgcat attatgacac aacacaatac 5460 tattcctgtg aaggtaggta tagactgttt atctaatgag tggtccatac tttaccacca 5520 attgcgttcc aaagggacaa attggtttaa tggtgattat tcccgctttg atgggattac 5580 gcccaggaat gttttgcagg gtattgtgaa acgaataaat aaattttata ataacaaaaa 5640 ttctttagcc ataacggatt ctaacctttc tattaactcc gatcttgcga gatctttgtt 5700 aatggatatg gctagcactc ggtatggcct aaccaatggg gatctatggt atgtcacaag 5760 tggtattcct tcggggtttc ctttgactgt catagttaac tcccttgtga ataatttttt 5820 tattcatttt agttatatca agttgatgaa gagggaggag ttgaattcac tttacccact 5880 tcatagtttc cgtcagatgg tggcttatgc tacctacggt gatgacaact tggtttctgt 5940 aaatgatgta attacagaaa ggtttaattt agttaaaatt gctgacttgc ttgccgaaca 6000 tggcgtgacc cttaaaaatg gggctgataa aaatgaagag attttatccc cattttatcc 6060 tttggaaaag gttgattttc tcaaacgcaa gtttgtgcat tatcaagggc atgttgtggc 6120 acctctcaat cctgtaaata taactgagag gttgcattgg attagaaagg gtcttgggga 6180 agcagatgct actcttgaaa attgtagttc tgctgccttt gaggctcttt tccacggtag 6240 gtgttattat gataccttgg tagcgaagat ttataaggcg tgtgcagctt caaagttgtc 6300 tatacagctg cccacttata atgatgcgtt agccattttt ctttctaatg attcttttgc 6360 caaggcgatc caaactattt ctctggattt gccgaaggct atttttgtaa ataaaagtaa 6420 ttattttgtt tctgaaattt ttcccgacgt tttcttttgc tccaacgaaa ggaacgtcac 6480 tttacataag ttactggaga ttacaaccac acgcaatatt tgttatatct ccagaaatta 6540 cgagagccga aacagctcac gaggcttatt ctcactgaaa ggtgagggtt gggctctggc 6600 tcctgtttca gctcgcttag ttgtatataa aaatatgcaa aagcctgttt actttgtcga 6660 tgaggcaaat gatggacttg ctcttgcata ttgtttagat tatatgctta gaataaaagg 6720 agtctctcgg tctcgtttgg cccaagtgtt gtacaacatt tttgggcatg atgagactct 6780 gtgctccaga attgcttcta atttcagtct tttggactca aataaatatg tgccaccaca 6840 taagaagtga gttcttttgt tcctttttct agtctgtaaa tactcgtttt agctttccta 6900 gtgtaagctc ctgtttagca ggtcgtgcct tcagcaagca caccaaaaag atttgctttt 6960 tcttgagtct ttagagtctt ttggagggat ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa 7020 aaaaaaaaaa 7030 //