ID AY751778; SV 1; linear; genomic RNA; STD; VRL; 6285 BP. XX AC AY751778; XX DT 22-SEP-2005 (Rel. 85, Created) DT 19-OCT-2005 (Rel. 85, Last updated, Version 2) XX DE Nemesia ring necrosis virus from Nemesia fruticans putative movement DE protein, polyprotein, and coat protein genes, complete cds. XX KW . XX OS Nemesia ring necrosis virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6285 RX DOI; 10.1099/vir.0.80916-0. RX PUBMED; 15914862. RA Koenig R., Barends S., Gultyaev A.P., Lesemann D.E., Vetten H.J., Loss S., RA Pleij C.W.; RT "Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a RT histidylatable tobamovirus-like 3' end"; RL J. Gen. Virol. 86(Pt 6):1827-1833(2005). XX RN [2] RP 1-6285 RX DOI; 10.1007/s00705-005-0545-6. RX PUBMED; 15883655. RA Koenig R., Pleij C.W., Lesemann D.E., Loss S., Vetten H.J.; RT "Molecular characterization of isolates of anagyris vein yellowing virus, RT plantago mottle virus and scrophularia mottle virus -- comparison of RT various approaches for tymovirus classification"; RL Arch. Virol. 150(11):2325-2338(2005). XX RN [3] RP 1-6285 RA Koenig R.; RT ; RL Submitted (17-SEP-2004) to the INSDC. RL Institut fuer Pflanzenvirologie, Mikrobiologie und Biologische Sicherheit, RL Biologische Bundesanstalt fuer Land- und Forstwirtschaft, Messeweg 11, RL Braunschweig D38104, Germany XX DR MD5; 4ace238e8ca3aa5e035ad447097dd792. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6285 FT /organism="Nemesia ring necrosis virus" FT /host="Nemesia fruticans" FT /mol_type="genomic RNA" FT /db_xref="taxon:312009" FT CDS 154..2052 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF1; suppressor of RNA silencing" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:Q3MLL0" FT /protein_id="AAW88522.1" FT /translation="MEHGLPVSSRRPVHHLPPRFISESGSQSLGHAASAVARPLPLDHH FT QGLSAFPQLLRNPGLGIRHHPPPPRCSQGYRDLPALLPLELSSLHSQLRHVYETIKVSQ FT TGGHQPKLRRTHQLSSHSRRHRSLPHHFLLSPPARNRLHARRADVLYAASNRRSFRTLP FT TPQPVALQPSGAPRKQLHRSLPSPNHLHLHSEFQQPSLHSRRSSRRKLRPASVRHSLVE FT ASTDLQPVLQSFSDYPGILGPRPLHPHPERVPRERLSRPPSRLVQRPSSSRASRGDVPQ FT PTSSSPPRSIRGLRRSVHLHPSRPNTSDLRPCRLRQDTLKQAEACMGDSSGLGQPANLR FT ALERPCPPKSRVQLLPLSPAKGSALPVPAPQSLLGPSPSILGPRPSNLEGAHSWLTSPL FT GVIPSDCTPGSSGTSARAFTSRSPTRGSTHPPRTTEPIVFGTLSEDSGLQQVLPGRLPT FT PLCAPLGIEPIHDPPPFLAPDHSHLPHSGGRVTHSGLRAASVHPEPARRVPHPPSPPGI FT QPELAPRVFPCASSSELPAARHGGQPPTSALAFRVPPVSIDVSLRCSADHSGQPSSVSR FT PSSPSCSSLDSGTSTPTISAPTRTERRSEHVSLSAPSSESLLSFRFPRFSLSGDSC" FT CDS 161..5530 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF2; contains replication-associated proteins" FT /db_xref="GOA:Q3MLK9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q3MLK9" FT /protein_id="AAW88523.1" FT /translation="MAFQLALDALSTTSHRDSSLNPVLNHSVTPLQRSLDLFPWIITKD FT SLPFLNSCGIPVSGFGTTPHPHAVHKAIETFLLFSHWSSLASTLSSVMFMKPSKFRKLA FT AINPNFDELTNFRLTPADTVRYPTTSSFLPQHEIVFMHDALMYFTPHQIVDLFERCPLL FT NRLHCSLVVPPESSFTDLSLHPTIYTYTLNSNNLHYTPEGHHAGSYDQPRSAIRWLKLR FT RISSPFFNLSVTILESWGPVHSILIQRGSPVSDSLAPPHASFNVPQARVLPEATFLNQP FT VRHRLVPSEVYDALFTYTRAVRTLRTSDPAGFVRTHSNKPKHAWVTPQAWDNLQTYALL FT NAPVRPRVVYNFFLSPLQKAQLYLSQHLNPFLVRALPFLGLVLPTLKVLTRGLPAPSVS FT SLQIAHRVLVGPQPEPSPLAHPLVAQLILHAQRNPLFLELCQKIPVFNKFFLAACRPPS FT ALRLELSRSMIHLPSWPLTILISLIPVVASPTLAFVLPQSIQSLHDGYHTHLHPPEFSL FT SWPLESFHVPARRNFLPPGMAANPPPAPLPFVSPPFPSTSASAAPLITPVNPAQSVAPP FT APPALASTLEPQLPPSQPPPEPNADPSTSHSRPPAPSPCSPSASPDSPSPATHVENPTH FT GSCQCSDCRPEPQHLRSINEFGALNQNPTPSPSPILNQSDPKSDLPGSDLLSDPSCAGP FT VVEFECLFPGTYHHSNGTFLTRQRVQPSSQAPLPQKNCLLTSIAPQLGVSEAVLWSYLC FT EMLPDSLLDNSEIRNFGLSTDHLTALSSRLNFECVIHTGQTTLPYGCVGATNRIQITFH FT PGPPKHFSPNIRLSASAPGSNPSKSPLVRAALRFQLNGDFLPFLGSHKHKVSVPHAKNL FT ISNMKNGFDGITSQLTESVGRSPKQKLLELDATIDVVFPRDVDVIHIAGFPGCGKSHPI FT QKLLQTKAFKHFRLSVPTNELRTEWKTDMALPESEVWRLCTWETSLFKSSNVLVIDEIY FT KLPRGYLDLALLADPSTSLVILLGDPLQGEYHSSHPSSSNSRLESETSRLSKYIDCYCW FT WTYRCPKAVADLFGVKTFNPERGFIRGELSHPQGLPNLVNSIATATTMQNLGHHALTIS FT SSQGMTYSTPTTILLDRHSTLLSPQNCFVALTRSRKGVIFIGNMYQASGHFGTSYMFTQ FT ALTGSPVDLMCAFPLYHTLPLIFDPIRSRRHRLVAGDHPTPSVDSTALRRYGHLPPHIP FT VDYSKDCFVSHKVVYRDGEDRSLTTLHLPPARLPLHLQVEPSIPSEVETSSTPPCRTPI FT TMALHGESFEELSAHFLPAHDPEVKEIAFADQRSSQFPFMDQPFELSCQPSSLLAASHR FT PASDPTLLVSSIKKRLRFRASESPYFITPNDMILGHHLFDSLCRAYGRDPSVVIPFDPA FT LFAECIALNEYAQLSSKTKATIVASASRSDPDWRFTAVRIFAKAQHKVNDGSVFGSWKA FT CQTLALMHDYVIMTLGPVKKYQRILDHNDRPRHIYTHCGKTPSQLASWCQEFACEGLSL FT CNDYTSFDQSQHGEAVVLECLKMRRCSIPDSLIQLHLHLKTNISTQFGPLTCMRLTGEP FT GTYDDNTDYNLAVIYSQYQMGSTACMVSGDDSVIFSSPPTHPSWAAVKDLLHLRFKTES FT TFQPLFCGYYVGPHGCCRNPYALFAKLMISTDRGNISDTLPSYLYEYSIGHRLGDACLD FT LVPDHLHSYLSACFDFFCRKASPLQKTLLSFDEPSPSVLKKLASSSAWASSPLLAELDD FT QSLQALLARSNLPSSHLDARVQRLESELLHSFQ" FT CDS 5532..6110 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q3MLK7" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3MLK7" FT /protein_id="AAW88524.1" FT /translation="MEELKPISVKQPSIPAPGTKLPPAPGQQSSAIVQPFQISVTDLGV FT AEVNVQITLSSDPTLSQLTAFYRHADLVECSAVLFPNFTSSSNPTHCDLAWVPANSTAS FT PKAILRTYGGNRFTLGGPITANEVISIPLPMNSVNCTIKDSVMYTDSPRLLAYSPAPLT FT AKTTPSGTLVIRGKVRLSSPLLQPLTASS" XX SQ Sequence 6285 BP; 1223 A; 2385 C; 1210 G; 1467 T; 0 other; gtaattcgtt tccagctcag cccgattcat ttcgccctga gttttctttt ccataccctg 60 cttagctctc cggccctaag cactatttcc gcccctcagc ttcgctctcc ggcccgaagc 120 ttttctctaa cagaccgtta attccctctg ttaatggaac atggccttcc agttagctct 180 cgacgccctg tccaccacct cccaccgaga ttcatctctg aatccggttc tcaatcactc 240 ggtcacgccg cttcagcggt cgctcgacct cttcccttgg atcatcacca aggactctct 300 gcctttcctc aactcttgcg gaatcccggt ctcgggattc ggcaccaccc cccaccccca 360 cgctgttcac aaggctatcg agaccttcct gctcttctcc cactggagct ctctagcctc 420 cactctcagc tccgtcatgt ttatgaaacc atcaaagttt cgcaaactgg cggccatcaa 480 cccaaacttc gacgaactca ccaactttcg tctcactccc gccgacaccg ttcgctaccc 540 caccacttcc tcctttctcc cccagcacga aatcgtcttc atgcacgacg cgctgatgta 600 ctttacgccg catcaaatcg tcgatctttt cgaacgctgc ccactcctca accggttgca 660 ctgcagccta gtggtgcccc ccgaaagcag cttcaccgat ctctcccttc acccaaccat 720 ctacacctac actctgaatt ccaacaacct tcactacact ccagaaggtc atcacgccgg 780 aagctacgac cagcctcggt ccgccattcg ttggttgaag cttcgacgga tctccagccc 840 gttcttcaat ctttcagtga ctatcctgga atcctggggc cccgtccact ccatcctcat 900 ccagagaggg tcccccgtga gcgactctct cgccccccct cacgcctcgt tcaacgtccc 960 tcaagctcgc gtgcttcccg aggcgacgtt cctcaaccaa ccagttcgtc accgcctcgt 1020 tccatccgag gtctacgacg ctctgttcac ctacacccga gccgtccgaa cacttcggac 1080 ctccgaccct gcaggcttcg tcaggacaca ctcaaacaag ccgaagcatg catgggtgac 1140 tcctcaggct tgggacaacc tgcaaactta cgcgctcttg aacgcccctg tccgcccaag 1200 agtcgtgtac aacttcttcc tctctcccct gcaaaaggct cagctttacc tgtcccagca 1260 cctcaatccc ttcttggtcc gagcccttcc attcttgggc ctcgtccttc caaccttgaa 1320 ggtgctcact cgtggcttac cagccccctc ggtgtcatcc cttcagattg cacaccgggt 1380 tctagtggga cctcagcccg agccttcacc tctcgctcac ccactcgtgg ctcaactcat 1440 cctccacgca caacggaacc cattgttttt ggaactttgt cagaagattc cggtcttcaa 1500 caagttcttc ctggccgctt gccgaccccc ctctgcgctc cgcttggaat tgagccgatc 1560 catgatccac ctcccttctt ggcccctgac cattctcatc tccctcattc cggtggtcgc 1620 gtcacccact ctggccttcg tgctgcctca gtccatccag agcctgcacg acgggtacca 1680 cacccacctt caccccccgg aattcagcct gagctggccc ctcgagtctt tccatgtgcc 1740 agctcgtcgg aacttcctgc cgcccggcat ggcggccaac cccccaccag cgcccttgcc 1800 tttcgtgtcc cccccgtttc catcgacgtc agcctccgct gctccgctga tcactccggt 1860 caacccagct cagtcagtcg cccctccagc ccctcctgct ctagcctcga ctctggaacc 1920 tcaactccca ccatctcagc ccccacccga accgaacgcc gatccgagca cgtctcactc 1980 tcggccccca gctccgagtc cctgctctcc ttccgcttcc ccagattctc cctctccggc 2040 gactcatgtt gagaatccaa cccacggctc ttgccaatgt tcggattgcc gccccgagcc 2100 tcaacacctc agatccatca atgagttcgg agctctcaat cagaatccaa ctccttctcc 2160 cagccccatt ctgaaccagt cggatcccaa gtctgatctt cctgggtccg accttctttc 2220 cgacccctct tgcgccggtc cggtcgttga gttcgagtgt ctgttccctg gaacctacca 2280 ccactccaac ggaactttct tgaccaggca gagggttcaa ccttcttctc aggctccctt 2340 gcctcagaag aactgtcttc tgacctctat cgctccccag ctcggagttt ccgaagccgt 2400 cctctggtcc tatctttgcg agatgctgcc cgacagcctt ctcgacaact cagagatcag 2460 gaacttcggt ctttccacag accacctcac cgctctctcc tctcgcctca attttgagtg 2520 cgttatccac accgggcaga ccacactccc atatggctgc gttggtgcca ccaatcgcat 2580 ccaaatcacc ttccatcctg gccccccaaa gcacttttca cccaacatcc gactctcggc 2640 ttctgctccc ggatccaacc cctccaaatc tccactggtt cgagctgccc tcagattcca 2700 gctgaatggg gatttcctgc ctttcctcgg ctcccacaaa cacaaagtgt ccgtcccgca 2760 cgccaagaat ctcatatcca acatgaagaa tggcttcgac ggaatcactt ctcaactcac 2820 ggagtctgtc ggcaggtccc ccaaacaaaa acttctggaa ctcgacgcga cgatcgacgt 2880 cgtttttccc cgcgacgtcg acgttattca catcgccggt ttcccaggct gtggcaaatc 2940 tcaccccatc caaaagctgc tgcagaccaa ggccttcaag cacttccgcc tctccgtccc 3000 caccaacgag cttcggaccg aatggaaaac cgacatggcg ctccccgagt ccgaagtttg 3060 gcgcttgtgc acatgggaga ccagcctctt caagagctcc aatgtgcttg tcatagacga 3120 aatctacaag ctcccaaggg gttacctaga tctggctctc cttgcagatc cctccacttc 3180 tctcgtcatt ctcctcgggg accctctgca aggcgagtac cactcttccc atccctcttc 3240 ctccaacagc cgcctggagt ctgagacctc cagactttcc aagtacatcg actgctactg 3300 ctggtggacc taccgatgcc cgaaagccgt cgccgacttg ttcggcgtca aaactttcaa 3360 ccctgagcgc ggtttcatcc gaggcgagtt atcccacccg caaggtttgc ctaacctcgt 3420 caacagcatc gccactgcga ccaccatgca gaaccttggt caccacgcat tgacgatttc 3480 cagcagccaa ggcatgacgt actccacccc aaccaccatt cttcttgacc gccacagcac 3540 tcttctgtcc ccccagaact gcttcgtggc gctcactcgc agcagaaaag gcgtaatctt 3600 catcggcaat atgtatcaag cctccggaca tttcgggact tcctacatgt tcactcaagc 3660 tctcacaggc tcacccgtcg atctgatgtg cgccttcccc ctctaccaca ctctgcctct 3720 cattttcgac cccatccggt ccaggcggca ccgactcgtg gctggtgatc atccaacccc 3780 atccgtcgac tccacagccc ttcgccgcta tggtcatctc cctcctcaca taccggtcga 3840 ctactccaag gactgcttcg tgtcccacaa agtggtctac cgtgacggag aagaccgctc 3900 gctcaccacc ttgcatctac ctcccgcccg tctccctctc cacctccaag tcgagccctc 3960 aatcccctca gaggttgaga cctcttccac tcccccgtgc agaaccccta tcaccatggc 4020 attgcacggc gaatccttcg aggagttgtc tgcccacttc ctcccagctc acgaccccga 4080 ggtcaaagag atcgcattcg ccgaccagcg cagctctcag tttcctttca tggatcaacc 4140 ctttgagctg tcttgtcagc cgtcatctct gctcgccgca tcacatcgcc cggcctccga 4200 cccaactctc ctcgtgtcat ccatcaagaa gcgactccgc tttcgagcgt ctgagagccc 4260 gtacttcatc accccaaatg acatgatcct cggccaccat ctcttcgact ctctctgccg 4320 agcatacggt cgggatcctt cggtcgtcat ccctttcgac ccagctctct tcgcagaatg 4380 catcgccctg aacgagtacg cccagctttc atccaaaacc aaagccacca ttgtggccag 4440 cgcttctcgc tcagatcctg attggcgttt caccgccgtg cgaatcttcg ccaaggccca 4500 acacaaagtc aatgacggct ccgtcttcgg atcctggaaa gcctgccaga ctctagcact 4560 catgcatgac tatgtcatca tgactctggg cccggtgaag aagtaccagc gcattctcga 4620 ccacaacgat cgaccccggc acatttacac ccactgcggc aaaacccctt ctcaactagc 4680 ttcttggtgt caagagttcg cctgcgaggg cctttccctg tgcaatgact acacgtcttt 4740 cgaccaaagt caacacggcg aagccgtcgt gctagagtgt ctcaagatgc gtcgctgcag 4800 catcccggat tccttgatcc agctccactt gcacctcaaa accaacatct ccacccagtt 4860 cggacccctc acatgcatgc gcctcactgg cgaaccaggc acttacgacg acaacacgga 4920 ttacaatctg gctgtcatct actctcagta ccaaatgggt tccaccgcct gcatggtgtc 4980 gggagacgat tccgtcatct tttcctcgcc cccaacccat cctagctggg cggccgtcaa 5040 agacctcctc catctccgtt tcaaaactga gtccactttc cagcccctct tctgcggcta 5100 ctacgtcggc ccccacgggt gctgccgcaa cccgtacgcc ttgttcgcaa aactgatgat 5160 ctccacggac agaggcaaca tttccgacac actcccttcc tacctttacg agtactccat 5220 aggccatcgt cttggcgacg cctgcctcga tctcgtgccc gaccatctcc actcctacct 5280 cagcgcctgc tttgacttct tctgccggaa agcctcgccc ctgcagaaga ctctcctcag 5340 cttcgacgag ccttccccgt ctgtgctcaa gaagctggcg tcctcttcag cttgggcctc 5400 tagccccctc ctggctgaac tcgacgacca gtcacttcag gcacttcttg cccgatccaa 5460 tctgccaagc tcccacctcg acgccagggt tcaaaggctt gagtctgaat tgcttcactc 5520 atttcaataa catggaagaa ctcaaaccga tcagcgtcaa acagccctct attcccgctc 5580 ccggcaccaa gcttcctcct gcaccgggtc agcaatcatc cgccatcgtt caacccttcc 5640 agatctccgt caccgacctc ggcgtcgccg aagtcaacgt tcagatcacc ctctcctcgg 5700 accccactct ctctcagctc acagctttct accgtcatgc tgacctcgtg gaatgctccg 5760 ctgtactctt cccaaacttc acctcttcat ccaaccccac tcactgcgat ctcgcctggg 5820 ttcccgccaa ttccaccgcg tcacccaagg caatccttcg aacctacggt ggcaatcgct 5880 tcaccctcgg aggccccatc accgcgaacg aggtgatctc cattcctctg cccatgaact 5940 ctgtcaactg caccatcaag gacagcgtca tgtacaccga ctcaccccgt ctcctagcct 6000 actctccggc ccctctcacg gccaaaacca ccccttccgg cactcttgtc attcgtggca 6060 aggtccgtct ctcttccccc ctcctccagc ctctcacagc ttcctcgtga gggtggcgca 6120 caccacagtg cgtagtgttt cggcttccac ttaaatcgaa agccaacccc tccagttttc 6180 tggttgttcc ttggattgct acgttcacca gatttgtgta atctggccgt taggaactta 6240 aaattgcgcg gagttcgaat ctccccctgt cccgggtagg gaacc 6285 //