Dbfetch
ID AY751777; SV 1; linear; genomic RNA; STD; VRL; 6206 BP. XX AC AY751777; XX DT 23-OCT-2005 (Rel. 85, Created) DT 23-OCT-2005 (Rel. 85, Last updated, Version 1) XX DE Scrophularia mottle virus putative movement protein, polyprotein, and coat DE protein genes, complete cds. XX KW . XX OS Scrophularia mottle virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6206 RX DOI; 10.1007/s00705-005-0545-6. RX PUBMED; 15883655. RA Koenig R., Pleij C.W., Lesemann D.E., Loss S., Vetten H.J.; RT "Molecular characterization of isolates of anagyris vein yellowing virus, RT plantago mottle virus and scrophularia mottle virus -- comparison of RT various approaches for tymovirus classification"; RL Arch. Virol. 150(11):2325-2338(2005). XX RN [2] RP 1-6206 RA Koenig R., Pleij C.W.A., Lesemann D.-E.; RT ; RL Submitted (17-SEP-2004) to the INSDC. RL Institut fuer Pflanzenvirologie, Mikrobiologie und Biologische Sicherheit, RL Biologische Bundesanstalt fuer Land- und Forstwirtschaft, Messeweg 11, RL Braunschweig D38104, Germany XX DR MD5; ea9a1cbacd22891c84bd7a220e95cfaf. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6206 FT /organism="Scrophularia mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:312273" FT CDS 127..1980 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF1" FT /db_xref="InterPro:IPR004935" FT /db_xref="InterPro:IPR007110" FT /db_xref="UniProtKB/TrEMBL:Q3BDA0" FT /protein_id="AAW88519.1" FT /translation="MSYGFPACTRLSLIDRPQRRVFEPCSEPLSTTPPRLPSAIPLDHP FT EGTSAFPDSLWNSSFRIRNFSPSPCCAQSYRNILAFLSLELHGLDPFFCHVHETLQVRT FT LAIRQSKFLRASQLSAYSRRLSSLPHHLHLSSIPRSRLHARCSHVLRAFPNSPAVFELS FT QPSTTTLQPSRSPRKQLHRPLPPPIRLHLHPSREHSPLRSRRTPRWKLRSTSISHSMVE FT NQSDRFPSPQPVCQSPGILGPVPLYSHSTRSSPSSFQRKTDNLFPNSKMPRSARGDLSS FT STTSPPSRPVGSLRRTVHIHSSSENSSNFRPRRVRPNSLEQAPVRMGFVSSLGQSPNVR FT SAELSRPSKCRFRLLPVAPQQTATVPLSASAPNCRENPSILGPHPSTVQSLDTWNSNSS FT SVRFPPSVLRGDRPARPLVFGSVSTTSPTTGHPDEHSVSSSVFSPSNPQSSRTLQPALP FT QTICFPPAIPQITSSVALVENHSPSELLRTLSCSIPALHQSSLPSISTRWIQRSPSSFG FT LQSGVVVGNVFCPTTHPVPSTPPQSPRSSSRDSDDSSAFSSCPESPTGSLSSGYTTLST FT LSPRHWISRSPCGSRPVSPSSPPIQSFNQRASNGLSFSFFR" FT CDS 134..5536 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF2; contains replication-associated proteins" FT /db_xref="GOA:Q3BD99" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q3BD99" FT /protein_id="AAW88520.1" FT /translation="MAFQLALDSHSSTVHKDASLNPVLNHSVQPLQDSLQQFPWIIQKE FT HLPFLIACGIPASGFGTSPHPHAVHKVIETFLLFSHWSFMASTPSSVMFMKPSKFARLR FT SVNPNFSELVNYRLTAADSVRYPTTSTSLPSHEVVFMHDALMYFVPSQILQLFLSYPNL FT QRLHCSLVVPPESSFTDLSLHPSVYTYTLHGNTLHYVPEGHHAGSYDQPLSAIRWLKIN FT QIASPHLNLSVKVLESWGPCHSILIQRGLPPLHSKERQTISFRIPKCLALPEATFLHQP FT LRHRLVPSEVYDALFTYTRAVRTLRTSDPAGFVRTHSNKPQYAWVSSQAWDNLQTYALL FT NSPVRPNVVFDFFLSPLNKLRLYLSQHLHPIVVKTLPFLAPILPLFKALTPGIPIPVLS FT DFHLLFCVVIGQRGPLSLAAFPQPLQPLATLMNTRLVHRSFPPPILKALEHFNLLCPKP FT SAFRLRFLRSLLQWPSWRITLLLSSFAPCLAAFLHFTSPLSLQSLHDGYNAHLHPSDFS FT LEWSLETFSVPQPTPFLPLHLNLPDPVPEIPMIAPPFPAVPSLRLDPSPPATQPSQPSA FT PGTGSPAPPAVLDQSHQAPPQSKASTKEPPMDLAFLSLDEDKKVRPASPALDYIPCEAL FT EALPQHLRSINEFGSLNQVPLSMVSPLQNHSSEKENFPESDLLSDPSCCGPIVLFEDLF FT PGNYHHSNGSFPTRQRSQASSSIPMPEKNCLLASISSQVPYSPQELWNFLCELLPDSLL FT SNQEISSFGLSTDHLTALCFRLRLECIIHAPHILLPYGLKHSTSVVHISYSEGPPKHFS FT PYIKLTASAPGSNQSKSALVRSALRFQFNGAFLPFLQAHSHLISVPHAKNLISNMKNGF FT DGITSQLSNSPGVSPKSKLLELDSLIDVAQPRNVDIIHIAGFAGCGKSHPVQHLLKTKP FT FRHFRLSVPTNELRSEWKRDLDLPESEAWRLCTWETSLFKSSSVIVIDEIYKLPRGYLD FT LILLSDPSIQLAILLGDPLQGEYHSTHPSSSNARLPSETIRLAPYIDCYCWWTYRCPKK FT IADLFGVKTFSDKEGFIRSALSHPQGLPNLVNSIATANTMQNLGHHALTISSSQGMTYS FT SPVTILLDRHSSLLSPQNGLVALTRSKSGVVFIGNMFQASGHFGTSYIFTQALSNQPVD FT LMSAFPIYHKLPLIHEPIKSRRHRLVAGDRLPTPSINVKALLPKSLPPHISTSYDRDVL FT ISNPVCFSRAPESRLATLHLPTTRLPLHFDLESCAISDSSASAIPKLPTPFSHCFHGES FT FEELAAFFLPAHDPSLKEIVFLDHSSSQFPFLDVPFSLSCQPSSLLAASHKPSSDPTLL FT ISSIKKRLRFRPSSAPYSFTPNDILLGGILFESWCRAFGRSTSQTLPFKPALFAECICL FT NEYAQLSSKAQATIVANASRSDPDWRYTAVRIFAKSQHKVNDGSIFGSWKACQTLALMH FT DFVILTLGPVKKYQRIIDHFDRPSHIYTHCGKTPSQLNDWSQSFLQGSNFICNDYTSFD FT QSQHGEAVIFEALKMQRVSIPQHLIDLHIFLKTNVSTQFGPLTCMRLTGEPGTYDDNTD FT YNLSVIFSQYAISSHPIMVSGDDSVICGSPLERSNWPQIKSLLHLRFKTEFTSLPLFCG FT YYVGEAGCCRNPFALFAKLMISYDKGNLQETLPSYLYEFSIGHKLGDLVLSLFPSQLIQ FT YYSACFDLFCRKCPPSQKIILSFEPIPESFFLRLLNGSKWVSKTLFSDLPSSLLELMIG FT FSRLQSSHSDPKVQYLESELLHTFNHGGSQTNQSSTAIHPSARN" FT CDS 5478..6053 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q3BD98" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3BD98" FT /protein_id="AAW88521.1" FT /translation="MEEVKPIKVQQPSIPAPGTKLVPNDGQQSPAMVMPFQLTVTDFGV FT KETSVQITLSSDPGIAAITASYRHASIVECQAVLFPNRTSSSNPTHCDLVWVPANSTAS FT PTTILKTFGGSRFTLGGPITANQIITIPLPLDSVNCRIKDSVLYTDSPRLLAHSPAPST FT TQTVPSGSLIIRGKIRLSSPLLQPSSSS" XX SQ Sequence 6206 BP; 1332 A; 2081 C; 1038 G; 1755 T; 0 other; gtaatttatt cccgttcaac ccttttcagc cttgaacgtt tcctgtttta aactttccat 60 acttccgctt cgctctccgg cccgaagctt ttccccgttt cactccttcc gaccagtgat 120 tcacccatga gttatggctt tccagcttgc actcgactct cactcatcga ccgtccacaa 180 agacgcgtct ttgaaccctg ttctgaacca ctcagtacaa cccctccaag actcccttca 240 gcaattcccc tggatcatcc agaaggaaca tctgcctttc ctgatagcct gtggaattcc 300 agcttccgga ttcggaactt ctccccatcc ccatgctgtg cacaaagtta tcgaaacatt 360 cttgcttttc tctcattgga gcttcatggc ctcgacccct tcttctgtca tgttcatgaa 420 accctccaag ttcgcacgct tgcgatccgt caatccaaat ttctccgagc tagtcaacta 480 tcggcttaca gccgccgact cagttcgcta ccccaccacc tccacctctc ttccatccca 540 cgaagtcgtc ttcatgcacg atgctctcat gtacttcgtg ccttcccaaa ttctccagct 600 gtttttgagc tatcccaacc ttcaacgact acactgcagc ctagtcgttc ccccagaaag 660 cagcttcacc gacctctccc tccacccatc cgtttacact tacacccttc acgggaacac 720 tctccactac gttcccgaag gacaccacgc tggaagctac gatcaacctc tatcagccat 780 tcgatggttg aaaatcaatc agatcgcttc ccctcacctc aacctgtctg tcaaagtcct 840 ggaatcctgg ggcccgtgcc actctattct cattcaacgc ggtcttcccc ctcttcattc 900 caaagaaaga cagacaatct ctttccgaat tccaaaatgc ctcgctctgc ccgaggcgac 960 ctttcttcat caaccacttc gccaccgtct cgtcccgtcg gaagtttacg acgcactgtt 1020 cacatacact cgagcagtga gaactcttcg aacttccgac cccgccgggt tcgtccgaac 1080 tcactcgaac aagccccagt acgcatgggt ttcgtctcaa gcttgggaca atctccaaac 1140 gtacgctctg ctgaactctc ccgtccgtcc aaatgtcgtt ttcgacttct tcctgtcgcc 1200 cctcaacaaa ctgcgactgt acctctctca gcatctgcac ccaattgtcg tgaaaaccct 1260 tccattcttg gcccccatcc ttccactgtt caaagccttg acacctggaa ttccaattcc 1320 agttctgtcc gatttccacc ttctgttctg cgtggtgatc ggccagcgag gccccttgtc 1380 tttggcagcg tttccacaac ctctccaacc actggccacc ctgatgaaca ctcggttagt 1440 tcatcggtct tttccccctc caatcctcaa agctctcgaa cacttcaacc tgctttgccc 1500 caaaccatct gctttccgcc tgcgattcct cagatcactt cttcagtggc cctcgtggag 1560 aatcactctc cttctgagct ccttcgcacc ttgtcttgca gcattcctgc acttcaccag 1620 tcctctctcc cttcaatctc tacacgatgg atacaacgct caccttcatc cttcggactt 1680 cagtctggag tggtcgttgg aaacgttttc tgtcccacaa cccaccccgt tccttccact 1740 ccacctcaat ctcccagatc cagttccaga gattccgatg atagctccgc cttttccagc 1800 tgtcccgagt ctccgactgg atccctctcc tccggctaca caaccctctc aaccctcagc 1860 cccaggcact ggatctcccg ctccccctgc ggttctagac cagtctcacc aagctccccc 1920 ccaatccaaa gcttcaacca aagagcctcc aatggactta gcttttcttt ctttagatga 1980 agataagaag gttcgtccag cctcgcctgc acttgactac attccttgcg aggctcttga 2040 agcacttcct cagcaccttc gttccatcaa cgagttcgga tctctgaacc aagtcccact 2100 ctccatggtc tctcctttac agaatcacag ttctgagaaa gagaatttcc ctgagtcgga 2160 tttgctttca gacccctctt gctgcggtcc gatcgtcctt tttgaggatc tcttccctgg 2220 aaattaccat cattccaatg gttctttccc aactaggcag cgttctcaag cttcttcttc 2280 gatccctatg ccagaaaaga actgcctgct cgcttcgatc tcctctcaag ttccttattc 2340 tccccaagaa ctatggaact tcctctgtga actacttcca gattccctct tgtccaatca 2400 agagatcagc tccttcggtc tctccactga tcacctcaca gctttgtgct tcagactgcg 2460 tctcgaatgc ataatccacg ccccgcatat tctccttcca tatggtctca aacattcgac 2520 ttctgtcgtc cacatttctt actcggaagg acctccaaag catttctcac cctacatcaa 2580 actcaccgct tcagcgcctg gttcgaatca gagcaagtct gctctcgttc gttccgccct 2640 ccgtttccaa ttcaacggcg ccttcttacc tttccttcag gcccactccc acctcatttc 2700 cgttcctcat gccaagaatc tcattagcaa catgaagaac ggttttgatg gtatcacttc 2760 ccaactctcc aattcccctg gagtctcccc aaaatccaaa ttgcttgaac tcgatagttt 2820 gatcgacgtt gcccaacccc gcaatgttga catcattcac atcgcgggtt ttgccggctg 2880 cggaaaatcc catccggttc agcatctcct caagaccaag cccttccgcc atttccgtct 2940 ctccgtccca accaacgagc ttcgatcaga atggaagcgc gatcttgatc ttcccgagtc 3000 tgaggcttgg cgcctttgca cttgggaaac ctctcttttc aagagctctt cagtgatcgt 3060 catcgacgag atctacaagc tcccgagagg ttatcttgat cttatcctcc tctctgatcc 3120 ttccatccaa ctcgccattc ttcttggaga tccgcttcaa ggcgaatatc actccacaca 3180 tccatcatcc tcaaatgctc gccttccttc agaaaccatc cgcttggctc cctacatcga 3240 ttgctattgt tggtggactt atcgctgccc caagaaaatc gctgatctct tcggagtcaa 3300 aaccttcagt gacaaagaag gtttcattcg cagcgctttg tctcaccccc agggtcttcc 3360 aaatctcgtg aacagcattg ctacggccaa taccatgcaa aatctcggcc atcatgctct 3420 cactatctca agcagtcaag gtatgactta ttcatctcct gttactattc ttctagatcg 3480 gcactcatct ctgctctcgc cgcagaacgg tctagttgct ctcacaagat ccaaatcagg 3540 agttgttttt atcggcaaca tgtttcaagc ctctggtcac ttcggaacct cttacatctt 3600 cactcaggct ctttcaaatc agcctgtcga tttaatgtct gcttttccga tttaccacaa 3660 gctaccgctc atccacgaac cgatcaagtc ccgccgccac cggctcgtcg caggagatcg 3720 actccccaca ccttccatta acgtcaaagc tcttctgccg aagtctctgc ctcctcacat 3780 ctcgacctcc tacgaccgcg atgttctcat ttcaaatcca gtttgctttt cgcgggctcc 3840 tgaatcaaga ctcgcaactc tccatcttcc gacgacgaga cttccactcc atttcgatct 3900 ggagtcctgc gccatctccg attcatccgc ctctgcaatc ccaaagctcc cgactccttt 3960 ctcccactgc ttccatggag aaagcttcga agagcttgcg gctttcttct tgccagctca 4020 tgacccttcc ctaaaggaaa tcgtcttcct ggaccactcc agcagtcaat ttcctttcct 4080 cgatgttcct ttttccctgt cctgtcaacc ctccagtctt ctcgcagctt cccacaaacc 4140 ctcttcggat cccactcttt tgatcagctc catcaaaaaa aggctgcgtt tccgaccttc 4200 atctgcccct tattctttca caccgaatga tatccttctg ggtggcattc tttttgaaag 4260 ttggtgtcgg gcatttggca gatcgacctc tcagaccctt cctttcaagc ccgctctttt 4320 tgctgagtgt atttgcctca acgaatacgc tcagttgtct tccaaggctc aagccacaat 4380 tgtggctaat gcctcccgtt cagatccaga ctggaggtac acagcggtcc gaatttttgc 4440 aaaatctcag cacaaagtca atgatggtag tatcttcggc tcttggaaag cttgtcagac 4500 tcttgctctc atgcatgatt tcgtcatcct tacacttggt ccggtaaaaa aataccaacg 4560 catcattgat cacttcgacc gaccatctca catctacact cattgcggca agactccgtc 4620 ccaactcaac gactggtccc aaagtttcct tcaagggtcg aatttcatat gcaacgacta 4680 cacctctttt gatcagagtc aacacggtga agccgtcatc tttgaggccc ttaaaatgca 4740 acgcgtttca attcctcagc acctcatcga tctgcacata ttcttgaaga ccaatgtttc 4800 cacgcagttt ggccctctca cctgcatgcg tctcaccggg gagcctggaa cctacgatga 4860 caacactgac tacaatcttt ccgtcatctt ctcacagtac gccatctctt cccatcccat 4920 catggtttcc ggcgatgatt cagttatttg tggctctcca cttgaaagat ccaactggcc 4980 acaaatcaaa tctctcctcc atcttcgctt caaaactgaa ttcacctcac ttccactttt 5040 ctgcggatac tatgttggtg aagccggatg ttgtcgcaac ccttttgccc ttttcgctaa 5100 attgatgatt tcatacgaca agggcaacct tcaagaaaca cttccatcat acctctacga 5160 gttctccatt ggccacaagc ttggggacct cgtactttct cttttcccat cccaactcat 5220 ccaatactac agcgcttgct tcgatctctt ttgtcgcaag tgcccacctt ctcagaaaat 5280 cattctttcc tttgaaccaa ttccagaatc cttctttttg aggcttctga atgggtccaa 5340 atgggtttca aagactcttt tctcagatct cccatcctcc cttctcgaac tcatgatcgg 5400 tttttctcga cttcaaagct ctcactcaga ccccaaggtt caatacctag agtctgaatt 5460 gcttcacact ttcaatcatg gaggaagtca aaccaatcaa agttcaacag ccatccatcc 5520 cagcgcccgg aactaagctt gtgcccaacg atggtcagca atcaccagcc atggttatgc 5580 ctttccagct gaccgtgact gactttggtg tcaaagaaac ctccgttcag atcactcttt 5640 catcagaccc aggaattgct gccatcaccg cttcgtaccg acacgcttcg attgtcgagt 5700 gccaagcagt acttttccca aatcgcacat cttcttccaa tccaacacat tgtgatcttg 5760 tttgggttcc cgcaaactcc actgccagcc ccacaacaat cctcaagact tttgggggct 5820 ctcgcttcac tctcggcggt ccaatcactg ccaatcagat cataaccatt cctctccccc 5880 tcgactccgt caattgccgc atcaaagaca gtgttcttta cactgactcc ccacggcttt 5940 tggctcactc tccagctccc tcaaccactc agacagttcc ttccggctct ctgattatcc 6000 gaggtaagat tcgtctttcc tctcctcttc ttcaaccctc ttcttcttct taaagcccag 6060 cagtcttctg ctgagctttg ctcttccgca tttgcggggc tttgctggcc taaccagcac 6120 atgtaatcgt ggccggtgcc accccctgca gcacacgcag gttttgtggg ttcaactccc 6180 ccccttttcc gagggtatcg gaaacc 6206 //