ID AY744931; SV 1; linear; genomic RNA; STD; VRL; 5998 BP. XX AC AY744931; XX DT 01-OCT-2005 (Rel. 85, Created) DT 16-SEP-2010 (Rel. 106, Last updated, Version 3) XX DE Bean pod mottle virus subgroup I segment RNA1, complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-5998 RX DOI; 10.1094/PHYTO-97-0079. RX PUBMED; 18942940. RA Gu H., Zhang C., Ghabrial S.A.; RT "Novel Naturally Occurring Bean pod mottle virus Reassortants with Mixed RT Heterologous RNA1 Genomes"; RL Phytopathology 97(1):79-86(2007). XX RN [2] RP 1-5998 RX DOI; 10.1094/PHYTO-97-10-1255. RX PUBMED; 18943683. RA Zhang C., Gu H., Ghabrial S.A.; RT "Molecular Characterization of Naturally Occurring RNA1 Recombinants of the RT Comovirus Bean pod mottle virus"; RL Phytopathology 97(10):1255-1262(2007). XX RN [3] RP 1-5998 RA Zhang C., Ghabrial S.A.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, University of Kentucky, 1405 Veterans Drive, Lexington, KY RL 40546, USA XX DR MD5; c6d40933d6d59dbe0a3701a1d4ad7c1a. XX FH Key Location/Qualifiers FH FT source 1..5998 FT /organism="Bean pod mottle virus" FT /segment="RNA1" FT /strain="IL-Carbondale 1 (IL-Cb1)" FT /mol_type="genomic RNA" FT /country="USA" FT /note="subgroup: I" FT /db_xref="taxon:12260" FT CDS 368..5923 FT /codon_start=1 FT /product="polyprotein 1" FT /note="proteolytically processed by a virus-encoded FT protease to generate five mature proteins required for FT viral RNA replication" FT /db_xref="GOA:Q3L2Z2" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q3L2Z2" FT /protein_id="AAW69768.1" FT /translation="MKFYPGQNISEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSIEEMEYDDGELIFSYFQNFLLSIVSNSSKTTKLRAYIR FT STFAYHFQHFVEFDQYTNDSLNTVDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLLMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFITNSELITC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLVAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLEVVSNFVRKLLGLDSVFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEANKLMRESAL FT HCSKTIRKIPFVIFAHGESRVGKSLLVDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVVSEPSAEAQLIPLVSSAPYPLNMAGLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAHCFTKWERHVKEQESNLSQIKGKKNESGHFNNFQQLMDLAVSWNLSADIMKN FT RIKAERNDMVYVFSAGRKDKIFHCFLNKEGECTVRPDSIDDPEAQALLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYTGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KTYWHVYDPDKFQMFDNSEIGLYTNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQVVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVTGDGEEMSLIPGTSVEEAYNKLTVELEKCVPTLVGIECPK FT DEKLPRRKIFDKPKTRCFTILSMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKNVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFISLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSE FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQRIMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDDKLVLANTQEFFDGNFPTDSWLPIFVNCLYPVSQLPAEAVIVNVVC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 5998 BP; 1746 A; 986 C; 1309 G; 1957 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcataggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaag acttctcaat ttctctctac 120 atttcttgta tacggctttc aaagtgaaag aaaatcactc tctgtgctgg tcacagactt 180 cgtgaatcat tttctttctg ctctcagttc atttgctgaa cactctccta tttgatatag 240 gacttcgtgt cagatttgaa cttctcctat ctctctttct cggttcttca tttgatttca 300 aatttctctg aaatttaaat ttcttttgac attttgaact ttgtgttggc ctcatttgaa 360 aaacaacatg aagttctatc ctggtcaaaa tatttctgaa attgtttacc actttcagag 420 taatgagaca gccaataggt tagatgcata ttttgcctgt ggctgtgagg aggatactga 480 agtcctcgct cgtttgaagc agtgtaaccc tcgtctgctt catttgtcat atgctgcctt 540 ttgtttagaa atgggcagtc attcaataga ggaaatggaa tatgatgatg gggaattaat 600 tttttcctat tttcaaaatt ttttgctttc catcgtttcc aactcttcta aaacaaccaa 660 attgagagca tacattcgtt caacatttgc atatcatttt cagcattttg ttgaatttga 720 tcaatacaca aatgattctc tcaatactgt agatacaagt gtatcagccc aagggatagc 780 agacttggct ctctctatgg tcagatggat acccactcag attaaaaaag ttgttaattt 840 tggtgtggga tctgttatag agtctttttc agagcatttt aataagctct tgatgcaata 900 ttgtccaata gtttttcaag ctttcagctg ggttaacaat atttggacaa tggtcaaaga 960 atggatagaa gaagctgcga aagaaatttc atggttcttg caaggatgta aagagctgct 1020 agcctgggga atgtgcattt tggctagctc ctgtgctcta ggattggttg aaaaatgcct 1080 tatctctttg ggcatgattt ctgaatcttt tgatttggtt ggtttgtttg ttcgatctgc 1140 cattgtggga gctttctgtg tttccataaa aactggtaag ttcatcacaa acagtgagtt 1200 gattacttgt gctaccattg cagtttctac aatagcaact gtaatgtctc aggcttttaa 1260 gccttctgaa gagattaagg gacagttcca agccctttca gttctagaag ggttggcaac 1320 acagctcact tcattttgtg acacatcttt agttgctatg ggaaaaacct gcacagcttt 1380 taatcaaatt tgcactgctg gcaaaaatgt taaggtgatt gcaggtaggt tactagaagt 1440 tgtttccaat tttgtcagaa aattattagg attggacagt gtttttctca gagatgctgc 1500 actcatcttt tctcaagatg tggatgggtg gttgcgtaac atcagttggt gccaagaaca 1560 gtttttgttg aaagcttaca tgtcacaaga tgatcttatt gtcctgcgct ctttagttgt 1620 caaaggtgaa agaatgaggg aacagatgct tgaaggagaa gttaaggtgt ctccaagtgt 1680 ttgcaacctt attgtcaaag gctgtgaaga agcaaataaa ttgatgcgtg agagcgcact 1740 tcattgttca aaaacaatta ggaagattcc ttttgttatt tttgctcacg gtgaatcccg 1800 ggttgggaaa tctctgctgg ttgataggct aatcacagat ttctgtgatc atttggaaat 1860 tggagaagat gctgtgtact caaggaatcc atcagatcct ttctggagtg gatatagaag 1920 gcagccaatt gttactattg atgattttgc tgctgttgtt tcggagccat ctgctgaagc 1980 tcagttaatt ccattagttt caagtgctcc ttatccatta aacatggctg gtttggagga 2040 aaagggaatg cactttgatt cccagatcat gatgtgttct tcaaattttt tagagccgtc 2100 tcctgaagct aaaattagag atgatatggc ttttagaaat cgaagacatg tgctgatcac 2160 agttgaactc aaacctgggg ttgaatatga tgagagtgat tttactaaaa atcagcgata 2220 tttgctgaaa acttggtttc atgatcatta tgttgtagac caaactttcg agtcttatgc 2280 tgatctgctg gcacattgtt ttaccaagtg ggagagacat gttaaggagc aagagtcaaa 2340 tctgtctcaa attaagggca agaaaaatga aagtggtcat ttcaataact ttcaacaact 2400 tatggatttg gctgtttcat ggaaccttag tgcagatatc atgaaaaaca ggatcaaggc 2460 tgagagaaat gacatggttt atgttttttc tgcagggagg aaggataaaa tttttcattg 2520 ttttctgaac aaggaaggcg agtgcacggt tcgtcctgat tcaatagatg atcctgaagc 2580 gcaagctttg ctcaaagctt cagagacaat gctcatgaaa gcctatgcct tcctcaaata 2640 caataatgca acaaatttga ttgtcagaac ccatttggca gaactggtga atgaagattt 2700 ctatgatgag aaattcaatt tcattggaac aattggaaca ccggcttttc atcgccaaat 2760 agctgcacat ttggaaaaga tgccattgtg gcaaaaagca attttgtgtg gaatgggaca 2820 ttgtttgtct cggaaaagca aagaaacctg gtatactggt atgaaggaga aatttgtgca 2880 gatgatgaaa agcatctatg aaactgaagt cacagattgg ccagtgccat tgaaaatcat 2940 ttctggtact attctagcca ccattttggg aacaactttt tggaagttat tttccttttt 3000 aagggatgct ggtaatggag gtgtttttgt tggtaatgtt gcttcagcat ttactacatc 3060 aagtgtgctc gaagcgcaaa gccgaaaacc caacagatat gaggtctctc aatataggta 3120 tcgcaatgtg ccaataaagc gcagagcgtg ggttgagggc caaatgtctt ttgatcaatc 3180 agtggtagca attatgtcaa aatgtaaagc cagtatgaga atgggaaaca ctgatgctca 3240 aattttgatg gttccagggc gtagattcat tgcacatggt cattttttca agaatctcac 3300 ccaaaaagtt agagtccaaa ttgttacttc tgagaaaacc tattggcatg tgtacgatcc 3360 tgataaattt caaatgtttg ataacagtga aatcgggttg tatacaaatc caactttgga 3420 ggacatccca cattctgctt gggacctttt ctgctgggac agtgagaaaa ctctgccaaa 3480 taatttttct gctgaattgc tttcctgtaa attggacact gttacgggac aatattaccc 3540 agaatgggct ccaataaatt gtcgagtaca tcggcaacca attcacataa ctgaagggaa 3600 ttatgttagg aaacaagatg taagcatcga atatgatgcc tgcacaattc ctaatgattg 3660 tggatctctg gtggttgcta aggtcggaaa tcacaagcaa gttgttggtt ttcatgttgc 3720 tggaagcaaa ggaagattgg gctatgcttc attaatacca tatgttgagc ctgtggtaca 3780 agcccaaagt gctgaagtct attttgactt ttttcctgtg gaagttgata gtcaagaggg 3840 agttgctcat attggtgaac tcaaatctgg agtttatgta ccactgccca caaaaactaa 3900 tcttgtggaa actcccaaag aatggcagtt ggatttgcct tgtgataaga ttccaagtgt 3960 gttaaccact actgatgaga gattggttgg cacagagcat gaaggatatg acccatttct 4020 tggtggtatt caaaaatatg caactcccat gatgcctctt gatgaggaga ttctttccaa 4080 agttgcacaa gacatggttg aagaatggtt tgattgtgtt gatgaggagg atacatttga 4140 agaagtttct ttgagtgctg cactcaatgg tgttgaaggt ttggattaca tggaacgcat 4200 tcctcttgcc acttcagagg gttttcctca tgttctgtcc aggaaaaatg gtgaaaaagg 4260 caagagaaga tttgtcactg gagatggtga agaaatgtca ctaattcctg gtaccagtgt 4320 tgaagaagca tacaataaat tgactgttga actagaaaag tgtgttccaa cattggttgg 4380 catagaatgt cccaaagatg aaaaacttcc ccgtcgcaaa atttttgata aacccaagac 4440 gcgctgcttc accatacttt ctatggaatt taatctagtg gtgcgtcaaa aattcttgaa 4500 ttttgtgcga ttcattatga agaaaaggga caaattgagt tgccaagttg gaatcaatcc 4560 atattctatg gagtggactg gtttggcaaa tagactgttg agcaagggaa atgacatttt 4620 gtgttgtgac tatgctagtt ttgatggtct gataactaag caagttatga gcaagatggc 4680 agaaatgata aacagtcttt gtggtggaga tgagaaactg atgcgtgaga gaacacatct 4740 tctgttagct tgttgctcca ggatggcaat ctgtaaaaaa aatgtttgga gagttgagtg 4800 tggtatccct tctggatttc cactcactgt tatctgtaat agcattttca atgagatgct 4860 tatcagatat agttatgaaa agttgttgcg tcaagctaag gctcctagta tgtttctcca 4920 gtcttttaaa aattttattt ctttgtgtgt ttatggagat gataatttaa ttagtgttca 4980 tgagtatgtt aagccatatt ttagtggttc taaattaaaa agtttcctag ctagtcataa 5040 catcaccatt actgatggaa ttgacaaaac tagtgcgact ttacagttta gaaagctgtc 5100 agagtgtgat tttcttaaaa gaaatttcaa gcaaatgtcc aatgttttgt gggtagctcc 5160 tgaagacaaa gctagtttgt ggtcacaatt acactatgtt tcatgtaaca atttggaaat 5220 gcaagaagct tatcttgtta acttggttaa tgtgttgcgt gagttgtacc tgcacagtcc 5280 agaagaagct cgtcagttga gaagaaaggc tctctctcgt attgagtggt tgcaaaaagc 5340 tgatgtgccc accatagcac aaattgaaga atttcattca atgcagagga ttatgaatgc 5400 tcctgattca aatgataata ttgatctctt gttgagcatc gacttgttgg gtcttcaggg 5460 tgcaggcaag gccttcccaa ataagattgt gtttgatgat aaattggtat tggcaaatac 5520 acaagaattt tttgatggaa attttccaac agattcttgg ttaccaatat ttgttaattg 5580 tctttaccct gtgagtcaat tgcccgcaga agctgtcatt gttaatgttg tttgtgggag 5640 tgggcgcggt ggtttgccta ctactgcttg gattagttct gcagttaaca atcgctcctc 5700 agatatcaat aagaaaattc ggacagcgct tggaaaaggt aagaaaattg tctttttgac 5760 tagagttgat ccttttcctg tggccttgtt agctgttctt tttggtgtta agaatgaaat 5820 tctgagttct aatgccacaa atccaatgtt gacaaggctt cttgagaact gcaagagtct 5880 taaatatttg gttgatgagt gtccttttgc atttgttaac tagtttgtaa tattttgttc 5940 acttaaataa agcgcattac tatgtgcaat gagtgtgttt aaatataaaa aaaaaaaa 5998 //