ID AY744493; SV 1; linear; genomic RNA; STD; VRL; 4785 BP. XX AC AY744493; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate SPAIN-2 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4785 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4785 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 49939f57ffdce41f7d97fc24a2248621. XX FH Key Location/Qualifiers FH FT source 1..4785 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="tomato" FT /isolate="SPAIN-2" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP17" FT /protein_id="AAV28043.1" FT /translation="MLTFFGNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSADEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1294..4701) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP16" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP16" FT /protein_id="AAV28044.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLSQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKLCICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLRGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGLPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4785 BP; 1548 A; 845 C; 852 G; 1540 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcggtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttctgct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaacaagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaggaaga 960 agaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctattaat tttgcatttt aaaatcaaaa acaaacaaaa 1080 acaaaaaaca aaaaagaaaa acaaaaaaca aaaaaatcaa aaaagaaaga aaaaacaaaa 1140 acaaaataag gctgaaaagc caaactttgg tccgaagact ctttttgttg tttttgttta 1200 tttgtgtttt ttgtttgttt cttgtttatt ttatatatac ataatctgac taatgtagag 1260 aattaaatca aatttagcct gtgacaagca gcctcagaca aggtgagaga aatccatagg 1320 tggccttcgt cttgtcattg tatctttcat taacataggg gctttgatct cagaatcatc 1380 atcatcctct atcttggatc tagatttata agattcattc ttaacatatc ctttacaaat 1440 ggttgttaga atagaacaga aataaatcgc aaggaaaatg aatgcaataa gcaatatcac 1500 tctgatagta tcaaaaaacg agccaaaata acttgcaatg aaattgaatg ggctcttaat 1560 ataatcccag aagccccatg ctgaagaatc agaattatat tgttgttctt catgagcata 1620 ctcatcattt tgatctatta tgttctctgg ttcttctaca acaacattat tgaccagaac 1680 ctccacagaa atatctggat tgccttctgg atacaacgtc attttcttct tgtccggatt 1740 agcagaacaa aacattgtta tgttgtattt atttgaccct tttttaacag ccagttgata 1800 agtagataga gagcaagcat ctatagaaat tgaagtagaa aatgtcaaat ccgagaaaaa 1860 ttctaaaatg caagataaac cttgaccgca tagaagacag ccgttgcaat ttaatcttgt 1920 tgaagttatg gaaggtctct taggagcaac tttaaaaaga tcagatggga gatcaacgac 1980 aatcttgagt ttgcctaaac tgaaagcttt ttccaagaaa aaactggaga aatctttgaa 2040 actaacagga atatctgata tttgctctaa accagatcta aatctgtatg tatcatatcc 2100 gcatgtttta atagtgattg attttttccc tattgctgca caatcccaag acatgtcatc 2160 tccttctaga gttttcttag taaaaatagg caatccatca tgagtcaatt gtgggtgacc 2220 aaacattttg acaggatcat tcaagtttgc aatatttcca gaataaatat ggccgtcagg 2280 tccatgagct atcagttcac ctatagtgat accatcattg tgcaaatctg cttgtatatc 2340 agcttgaaac aaggcatttt cataaggaac ctcttcagtg atccttgagc actgacctcc 2400 taaaatacca gaaatacaaa catctgccac tatggttgat tttagcactg aataaattct 2460 gtatgattta tccatgtcat agatattccg acagaatcca catgtagcac cttcattaat 2520 tgcaaaacac caagcttctt cacatcccca ataagaagtt ggtgttatac aaaaatcttg 2580 gaaacctgtt aaagcttgat tttttctgca agtgtcacag tttcctgtac aagttgaata 2640 aaaatctgtg tgagtgcttt ggataggagc tgttgtgtat ttttctgaca cttcataatg 2700 aattcccaca cttttgatat aaatcacaaa ttttttggct gtttccgagg ttttatcatt 2760 caacatgaat atagtccctc ctcctcttaa aagagattgt tctatcatgt atctatattt 2820 cccgtctaca acagaatcaa agatcaatga ttgcctgggc agaatgttct ctggtatgct 2880 tgtttcattt ttgtttagag agtctcctgc aatcattcca gaaattttgt ctgtacgatt 2940 ataagaatct attataccat tcctcaatct cttagcctcg tacagaccga ccgatgttaa 3000 ccctaaagag cttcctgtat aatctgaaaa tccgttatac aaaggtttgt ttctaaataa 3060 atctaggtat tcgcaaccta atctgcattt tataagatta tcaatagatg gatgtgcaac 3120 gcaattctgg ttctctatgc aatcattagg accttctata acaatgttag tgccaaagat 3180 actttctata atcgtatctt cttttacatt acagtaacat tgatcttttt cagggcattt 3240 ttcaaatttg cttgtaacca aaaacggaca gcctggaaca taaaaacatc cacttaaaca 3300 ttgggtagtt tgagccatag acatgggcat ttgagacaaa atgaccaaac ctattaagat 3360 ttcagtcaca aatttcagca aactaaagct cagcttagtg ttcactatta gatggaacca 3420 ttccatgcta gtccacttat gtttgttgta gtcatgatct gtttctttgg acaatatggg 3480 acactctgaa gaatgttctt ttgaagcttt gcttttgttg cagatgcaaa gtttagtaca 3540 ttcatgtgtg attatgcaca aattgccaca gttagaacat ttaaatggaa aatatttcca 3600 taagcaattt atgagcaaca aaatagggta tgtgatcaag cctataagat cataccagag 3660 aaagaggggt ttggttgtct tgtttactaa ccaccggata gggaaataga tcaacaaagc 3720 tatcaatatt aatcttatcc aagaaaaatt gatgcaggct gtttgtttat aaatgctttt 3780 tgaatatttg attatgcaat ctctaactct tttgtttgtt tttggtattt tagcagattt 3840 gtcaccgcac aagagattgt gctcaccatc caacatttcc tcagtaaaag tgatgcttgc 3900 tgatccagaa aaagatatga ccttgtgttc cacattttca ccaggctttt ttatcaaata 3960 acccatgatc ttctcagggc tagtgatgct aacagtatag ggattagcaa agtttgattt 4020 agttattttg cagtcgccag ataatttcac agtttgtaat gatactgttc cattagtagg 4080 gtacgagtta taagttatag gataattatc ttgtgacagg ctttctgaaa tgaagaattt 4140 tgttccgact gaaaaatgcc ttttgttgtc aagtttggta atggggataa ccgggacttt 4200 agagaatctt tttggcagat ttaaagaatt gtcacatttt tctaaacctt ctgctgaatc 4260 agaaacacag gaatatatga caccattatt ttccacttga taataaacat tataagtgga 4320 tatccctttt atctcacatt ttaatgaaga agcattcaag cagttgttgg gaagatccga 4380 gacagagatt gttttttgcg tagttgattc agcaaaaata gggatggttg attcttcttc 4440 tcgtatctgg cgggttccag gagtctgaga ttctagcatc agattagtta aagtctccaa 4500 gatagccttg cgttgaattg atgcagcagt gggtacttca ttctcagcag aatcatcata 4560 aacctcagga tggtctccac gaattatttc tactttggca tctgtggctc tgaagatcaa 4620 gaatgccaac aagacagaac tcagggcaat tgtgaaaaga ctcactttta ccactagttc 4680 tagtagtttt aaaattctca tcttagacgt ctgctcagat tataatggtt atatgattaa 4740 tttcaagatg tctggattaa ggtttttgtt tgcactgatt gctct 4785 //