Dbfetch
ID AY744492; SV 1; linear; genomic RNA; STD; VRL; 4782 BP. XX AC AY744492; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate SPAIN-1 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4782 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4782 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 5ef22415310c4217d25454ebd941cd4c. XX FH Key Location/Qualifiers FH FT source 1..4782 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="tomato" FT /isolate="SPAIN-1" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP19" FT /protein_id="AAV28041.1" FT /translation="MLTFFGNKGSSKSAKKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQI FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1291..4698) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP18" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP18" FT /protein_id="AAV28042.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVETIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGVSTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCIAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT NKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWSFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIVDD FT DDSEIKALMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4782 BP; 1556 A; 848 C; 837 G; 1541 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac ctcaggctgt tgaactcaaa atgttgactt ttttcggtaa 120 taaggggtct tctaagtctg ccaaaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gtagaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaatgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctagttg atcccaacat gccatctgaa aagcaaatca ttctgaaggg 600 tcaagggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattc aagcttaaat ttctgttaat tttgcatttt aaaatcaaaa aacaaaacaa 1080 aaaacaaaaa acaaaaagaa aaacaaaaaa caaaaaaatc aaaaacagaa aacaaaaaca 1140 aaataaggct gaaaagccaa actttggtcc gaagactctt tttgttgttt tttgtttatt 1200 tgtatttttt gtttgttttt gtttatttta tatatacata atatgactaa tgtagaaaat 1260 tgaatcaaat ttagcctgtg acaagcagcc tcagacaagg tgagagaaat ccataggtgg 1320 ccttcgtctt gtcattgtat ctttcattaa cataagggct ttgatctcag aatcatcatc 1380 atccactatc ttggatctag atttataaga ttcattcttg acatatcctt tacaaatggt 1440 tgttagaata gaacagaaat aaatcacaag gaaaatgaat gcaataagca atatcactct 1500 gatagtatca aaaaacgagc caaaataact tgcaatgaaa ttgaatgggc tcttaatata 1560 atcccagaaa ctccatgctg aagaatcaga attatattgt tgttcttcat gagcatactc 1620 atcattttga tctattatgt tctctggttc ttctacgaca acattattga ccagaacctc 1680 cacagaaata tctggattgc cttctggata caacgtcatt ttcttcttgt tcggattggc 1740 agaacaaaac attgttatgt tgtatttatt tgaccctttt ttaacagcca gttgataagt 1800 agatagagag caagcatcta tagaaattga agtagaaaat gtcaaatccg agaagaattc 1860 taagatgcaa gataaacctt gaccgcatag aagacagcca ttgcaattta atcttgttga 1920 agttatggaa ggtctcttag gagcaacttt aaaaagatca gatggaagat caacgacaat 1980 cttgagtttg cctaaactga aagctttttc caagaaaaaa ctagagaaat ctttgaaact 2040 aacaggaata tctgatattt gctctaaacc agatctaaat ctgtatgtat catatccgca 2100 tgttttaata gtgattgatt ttttccctat tgctgcacaa tcccaagaca tgtcatctcc 2160 ttctagagtt ttcttagtaa aaataggcac tccatcatga gtcaattgtg ggtgaccaaa 2220 cattttgaca ggatcattca agtttgcaat atttccagaa taaatatggc catcaggtcc 2280 atgagctatc agttcaccta tagtaatacc atcattgtgc agatctgctt gtatatcagc 2340 ttgaaacaag gcattttcat aaggaacctc ttcagtgatc cttgagcact gacctcctaa 2400 aataccagaa atacaaacat ctgccactat agttgatttt agcactgaat aaattctgta 2460 tgatttatcc atgtcataga tattccgaca gaatccacat gtagcacctt cattaattgc 2520 aaaacaccaa gcttcttcac atccccaata agaagttggt gttatacaaa aatcttggaa 2580 acctgtcaaa gcttgatttt ttctgcaagt gtcacagttt cctgtacaag ttgaataaaa 2640 atctgtgtga gtactttgga taggggctgt tgtgtatttt tctgacactt cataatgaat 2700 tcccacactt ttgatataaa tcacaaattt tttggctgtt tccgaggtct tatcattcaa 2760 catgaatata gtccctcctc ctcctaaaag agattgttct atcatgtatc tatatttccc 2820 gtctacaaca gaatcaaaga tcaatgattg tctaggcaga atgttctctg gtatgcttgt 2880 ttcatttttg tttagagagt ctcctgcaat cattccagaa attttgtctg tacgattata 2940 agaatctatt ataccattcc tcaatctctt agcttcatac agaccaaccg atgttaaccc 3000 taaagagctt cctgtataat ctgaaaatcc gttatacaaa ggtttgtttc taaataaatc 3060 taggtattcg caacctaatc tgcattttat aagattatca atagatgggt gtgcaatgca 3120 attctggttc tctatgcaat cattaggacc ttctataaca atgttagtgc caaagatact 3180 ttctataatc gtatcttctt ttacattaca gtaacattga tctttttcag ggcatttttc 3240 aaatttgctt gtaaccaaaa acggacagcc tggaacataa aaacacccac ttaaacattg 3300 ggtagtttga gccatagaca tgggcatttg agacaaaatt accaaaccta ttaagatttc 3360 agtcacaaat ttcagcaaac taaagctcag cttagtgttc actattagat ggaaccattc 3420 catgctagtc cacttatgtt tgttgtagtc atgatctgtt tctttggaca atatgggaca 3480 ctctgaagaa tgttcttttg aagctttgct tttgttgcag atgcaaattt tagtacattc 3540 atgtgtgatt atgcacaaat tgccacagtt agaacattta aatggaaaat atttccataa 3600 gcaatttatg agcaacaaaa tagggtatgt gatcaagcct ataagatcat accagagaaa 3660 gaggggtttg gttgtcttgt ttactaacca ccggataggg aaatagatca acaaagctat 3720 caatattaat cttatccaag aaaaattgat gcaggctgtt tgtttataaa tgctttttga 3780 atatttgatt atgcaatctc taactctttt gtttgttttt ggtattttag ctgatttgtc 3840 accgcacaag agattgtgct caccatccaa catttcctca gtaaaagtga tgcttgctga 3900 tccagaaaaa gatatgacct tgtgttccac attttcacca ggctttttta tcaaataacc 3960 catgatcttc tcagggctag tgatgctaac agtgtaggga ttagcaaagt ttgatttagt 4020 tattttgcag tcgccagata acttcacagt ttgtaatgat actgttccat tagtagggta 4080 cgagttataa gttataggat aattatcttg tgtcaggctt tctgaaatga agaattttgt 4140 tccaactgaa aaatgccttt tgttgtcaag tttagtaatg ggaataaccg ggactttaga 4200 gaatcttttt ggcagattta aagaattgtc acatttttct aaaccttctg ctgaatcaga 4260 aacacaggaa tatatgacac cattattttc cacttgataa taaacattat aagtggatac 4320 cccctttatc tcacatttta atgaagaagc attcaagcag ttgttaggaa gatccgagac 4380 agaaatcgtt ttttgcgtag ttgattcagc aaaaataggg atggttgatt cttcttctcg 4440 tatctggcgg gttccaggag tctgagattc tagcatcaga ttagttaaag tctccaagat 4500 agccttgcgt tgaattgatg cagcagtggg tacttcattc tcagcagaat catcataaac 4560 ctcaggatgg tctccacgaa ttgtttctac tttggcatct gtggctctga agatcaagaa 4620 tgccaacaag acagaactca gggcaattgt gaaaagactc acttttacca ctagttctag 4680 tagttttaaa attctcatct tagacgtctg ctcagattat aatggttata tgattaattt 4740 caagatgtct ggattaaggt ttttgtttgc actgattgct ct 4782 //