ID AY744491; SV 1; linear; genomic RNA; STD; VRL; 4774 BP. XX AC AY744491; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate NC-8 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4774 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4774 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 5b69ea4a7b41415046b2b0b0cfe75f85. DR EuropePMC; PMC3988053; 24736614. XX FH Key Location/Qualifiers FH FT source 1..4774 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="tomato" FT /isolate="NC-8" FT /mol_type="genomic RNA" FT /country="USA: North Carolina" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP27" FT /protein_id="AAV28039.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTIIDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSIMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSLNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1283..4690) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP20" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP20" FT /protein_id="AAV28040.1" FT /translation="MRILQLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFVESTTQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLVKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPLKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGMIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAADPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLSKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVLEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGLCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNSDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKVEDD FT DDSEINAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4774 BP; 1526 A; 863 C; 850 G; 1535 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaagga tgaaggtcct ttggtttcac ttgctaaaca 180 taatggcaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tacgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaatc ctacaggaaa 540 acttgtggtt gccctggttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataattgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtatcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagccgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cctgcaagct gataatccct aaaggaaaca gtgaaaagca 900 gatcaaaaaa cagcttaaag aattgagctt aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcattta attcgaaaac caaaacaaaa 1080 aacaagaaga aaaaacaaaa aatcaaaaac aaaaaacaaa aacaaaataa ggctgaaaag 1140 ccaaactttg gtccgaagac tctttttgtt gttttttgtt tatttgtata tatatttttt 1200 tgtttgtttt ttatttattt tatacatgca taatctgact aatgtagaag attgaatcaa 1260 attcagcctg tgacaagcag actcagacaa ggtgagagaa atccataggt ggccttcgtc 1320 ttgtcattgt atctttcatt aacatagggg cgttgatttc agaatcatca tcatcctcta 1380 ccttggatct agatttataa gattcatttt tgacatatcc tttacaaatg gttgttagaa 1440 tagaacagaa ataaatcaca aggaaaatga atgcaataag caatatcact ctgatagtat 1500 caaaaaatga gccaaaataa cttgcaatga aattgaatgg gcttttaata taatcccaga 1560 agccccatgc tgaagaatca gaattatatt gttgttcttc atgagcatac tcatcatttt 1620 gatctattat gttctctggt tcttctacaa caacattatt gaccagaact tccacagaaa 1680 tatccgaatt gccttctgga tacaacgtca ttttcttctt gtccggatta gcagaacaaa 1740 acattgttat gttgtattta ttagatcctt ttttaacagc cagctgataa gtagatagag 1800 agcaagcatc tatagaaatt gcagtagaaa atgtcaaatc tgagaaaaat tccaaaacgc 1860 aagataaacc ttgaccgcat agaagacagc cgttgcaatt taagcttgtt gaagttatgg 1920 aaggtctctt aggagcaact ttaaaaagat ctgatggaag atcaacgaca atcttgagtt 1980 tccctagact gaaagctttt tccaagaaaa aactagagaa atctttgaaa ctaacgggaa 2040 tatctgatat ttgctctaaa ccagatctaa atctgtatgt atcatatccg catgttttaa 2100 tagtgattga ttttttccct atcgctgcac aatcccaaga catatcatct ccttctagag 2160 ttttcttagt aaaaataggc actccatcat gagtcaattg tgggtgacca aacattttca 2220 caggatcatt caagtttgca atatttccag aataaatatg gctgtcaggt ccatgggcta 2280 tcagttcacc tatagtgata ccatcattgt gcaaatctgc ttgtatatca gcttgaaaca 2340 aggcattttc ataaggaacc tcttcagtaa tccttgagca cagacctcct aaaataccag 2400 aaatacaaac atctgccact atagttgatt ttagcactga ataaattctg tatgatttat 2460 ccatgtcata gatattccga cagaatccgc atgtagcacc ttcattaatt gcaaaacacc 2520 aagcttcttc acatccccaa taagaagttg gtgttataca aaaatcttgg aaaccagtta 2580 aagcttgatt ttttctgcag gtgtcacagt ttcctgtaca agtggaataa aaatctgtgt 2640 gggtgctttg gataggagct gttgtgtatt tttctaacac ttcataatga attcccacac 2700 ttttgatata aatcacaaat ttttttgctg tttctgaggt cttatcattt aacatgaata 2760 tagtccctcc tcctcctaaa agagattgtt ctatcatgta tctatatttc ccgtccacaa 2820 cagaatcaaa gatcaatgat tgtctaggca gaatgttctc tggtatgctt gtttcgtttt 2880 tgctcagaga atctcctgca atcattccag aaattttgtc tgtacgatta taagaatcta 2940 ttataccatt cctcaatctc ttagcctcat acagaccaac cgatgttaac cctaaagagc 3000 ttcctgtata atctgaaaac ccattataca aaggtttgtt ccgaaataaa tctaggtact 3060 cgcaacccag tctgcatttt ataagattat caatagacgg gtctgcagca caattctggt 3120 tctctatgca atcatttgga ccttctataa caatgttagt gccaaagata ctttctataa 3180 tcttatcttc tttcacatta cagtaacact gatctttttc tgggcatttt tcaaatttgc 3240 ttgtaaccaa aaatggacag cctggaacat aaaaacatcc actcaaacat tgggtagttt 3300 gagccataga catgggcatt tgagacaaaa tgatcatacc tattaagatt tcagttacaa 3360 atttcagcaa actaaagctc agcttagtgt tcactattag atggaaccac tccatgctag 3420 tccacttgtg tttgttgtag tcatgatctg cttctttgga caatatggga cactctgaag 3480 aatgttcttt tgaagctttg cttttgttgc agatgcaaat tttagtacat tcatgtgtga 3540 ttatgcacaa attgccacag ttagaacatt taagtggaaa atatttccat aagcagttta 3600 tgagcaacaa aatagggtat gtgatcaagc ctatgagatc ataccagaga aagaggggtt 3660 tggttgtctt gtttactaac caccggatag ggaaatagat caacaaagct atcaatatta 3720 atcttatcca agaaaaattg atgcaggctg tttgtttata aatgcttttt gaatatttga 3780 ttatgcaatc tctaactctt ttgtttgttt ttggtatttt agctgatttg tcaccgcaca 3840 ggagattgtg ctcaccatcc aacatttctt cagtaaaagt gatacttgct gatccagaaa 3900 aggatatgac cttgtgttcc acattttcac caggcttttt tactaaataa cccatgatct 3960 tttcggggct agtgatgcta acagtatatg gattggcaaa gttcgattta gttattttgc 4020 agtcaccaga taactttaca gtttgtaatg atactgttcc attagtaggg tacgagttat 4080 aggttatagg ataattatct tgtgtcaggc tttctgaaat gaagaatttt gttccaactg 4140 aaaaatgcct tttgttgtca agtttggtaa tgggaataac cgggactttg gagaatctct 4200 ttggcagatt taaagaattg tcacattttt ctaaaccttc cgctgaatca gaaacacagg 4260 aatatatgac accattattt tccacttgat aataaacatt ataagtggat atccctttta 4320 tctcacattt taatgaagaa gcattcaagc agttgttagg aagatccaag acagagattg 4380 ttttttgcgt agttgactca acaaaaatag ggatggttga ttcttcttct cgtatttgac 4440 gggttccagg agtctgagat tctagcatca gattagtcaa agtctccaag atagccttgc 4500 gttgaatcga tgcagcagtg ggcacttcat tctcagcaga atcatcataa acctcaggat 4560 ggtctccacg aattatttct actttggcat ctgtggctct gaaggtcaag aatgccaaca 4620 agacagaact cagggcaatt gtgaaaagac tcacttttac cactagttct agtagttgta 4680 aaattctcat cttagacgtc tgctcagatt ataatggtta tatgattaat ttcaagatgt 4740 ctggattaag gtttttgttt gcactgattg ctct 4774 //