ID AY744489; SV 1; linear; genomic RNA; STD; VRL; 4773 BP. XX AC AY744489; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate NC-6 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4773 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4773 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 0b0a0a7dc2e4074ff21d5c25221a706d. XX FH Key Location/Qualifiers FH FT source 1..4773 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="pepper" FT /isolate="NC-6" FT /mol_type="genomic RNA" FT /country="USA: North Carolina" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP27" FT /protein_id="AAV28061.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTIIDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSIMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSLNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1282..4689) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP24" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP24" FT /protein_id="AAV28062.1" FT /translation="MRILQLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGIRQIREEESTIPIFAESTTQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLVKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPLKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGMIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAADPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVLEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGLCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKVEDD FT DDSEINAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4773 BP; 1514 A; 860 C; 862 G; 1537 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacattt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcgaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaagga tgaaggtcct ttggtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tacgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctggttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 ccaggggaca ataattgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtatcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaggca ttcattgagg cttgcaagct gataatccct aaaggaaaca gtgaaaagca 900 gattaaaaaa cagcttaaag aattgagctt aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcattta attcgaaaac caaaacaaaa 1080 aacaagaaga aaaaacaaaa aatcaaaaac aaaaaacaaa aacaaataag gctgaaaagc 1140 caaactttgg tccgaagact ctttttgttg ttttttgttt atttgtatat atattttttt 1200 gtttgttttt tatttatttt atacatgcat aatctgacta atgtagaaga ttgaatcaaa 1260 ttcagcctgt gacaagcaga ctcagacaag gtgagagaaa tccataggtg gccttcgtct 1320 tgtcattgta tctttcatta acataggggc gttgatttca gaatcatcat catcctctac 1380 cttggatcta gatttataag attcattttt gacatatcct ttacaaatgg ttgttagaat 1440 agaacagaaa taaatcacaa ggaaaatgaa tgcaataagc aatatcactc tgatagtatc 1500 aaaaaatgag ccgaaataac ttgcaatgaa attgaatggg cttttaatat aatcccagaa 1560 gccccatgct gaagaatcag aattatattg ttgttcttca tgagcatact catcattttg 1620 atctattatg ttctctggtt cttctacaac aacattattg accagaactt ccacagaaat 1680 atccggattg ccttctggat acaacgtcat tttcttcttg tccggattag cagaacaaaa 1740 cattgttatg ttgtatttat tagatccttt tttaacagcc agctgataag tagatagaga 1800 gcaagcatct atagaaattg cagtagaaaa tgtcaaatct gagaaaaatt ccaaaacgca 1860 agataaacct tgaccgcata gaagacagcc gttgcaattt aagcttgttg aagttatgga 1920 aggtctctta ggagcaactt taaaaagatc tgatggaaga tcaacgacaa tcttgagttt 1980 ccctagactg aaagcttttt ccaagaaaaa actagagaaa tctttgaaac taacgggaat 2040 atctgatatt tgctctagac cagatctaaa tctgtatgta tcatatccgc atgttttaat 2100 agtgattgat tttttcccta tcgctgcaca atcccaagac atatcatctc cttctagagt 2160 tttcttagta aaaataggca ctccatcatg agtcagttgt gggtgaccaa acattttcac 2220 aggatcattc aagtttgcaa tatttccaga ataaatatgg ctgtcaggtc catgggctat 2280 cagttcacct atagtgatac catcattgtg caaatctgct tgtatgtcag cttgaaacaa 2340 ggcattttca taaggaacct cttcagtaat ccttgagcac agacctccta aaataccaga 2400 aatacaaaca tctgccacta tagttgattt tagcactgaa taaattctgt atgatttatc 2460 catgtcatag atattccggc agaatccgca tgtagcacct tcattaattg caaaacacca 2520 agcttcttca catccccaat aagaagttgg tgtgatacaa aaatcttgga aaccagttaa 2580 agcttgattt tttctgcagg tgtcacagtt tcctgtacaa gtggaataaa aatctgtgtg 2640 ggtgctttgg ataggagctg ttgtgtattt ttctaacact tcataatgaa ttcccacact 2700 tttgatataa atcacaaatt tttttgctgt ttctgaggtc ttatcattta acatgaatat 2760 agtccctcct cctcctaaaa gagattgttc tatcatgtat ctatatttcc cgtccacaac 2820 agaatcaaag atcaatgatt gtctaggcag aatgttctct ggtatgcttg tttcgttttt 2880 gttcagagaa tctcctgcaa tcattccaga aattttgtct gtacgattat aagaatctat 2940 tataccattc ctcaatctct tagcctcata caggccaacc gatgttaacc ctaaagagct 3000 tcctgtataa tctgaaaacc cattatacaa aggtttgttc cgaaataaat ctaggtactc 3060 gcaacccagt ctgcatttta taagattatc aatagacggg tctgcagcac aattctggtt 3120 ctctatgcaa tcatttggac cttctataac aatgttagtg ccaaagatac tttctataat 3180 cttatcttct ttcacattac agtaacactg atctttttct gggcattttt caaatttgct 3240 tgtaaccaaa aatggacagc ctggaacata aaaacatcca ctcaaacatt gggtagtttg 3300 agccatagac atgggcattt gagacaaaat gatcatacct attaagattt cagttacaaa 3360 tttcagcaaa ctaaagctca gcttagtgtt cactattaga tggaaccact ccatgctagt 3420 ccacttgtgt ttgttgtagt catgatctgc ttctttggac aatatgggac actctgaaga 3480 atgttctttt gaagctttgc ttttgttgca gatgcaaatt ttagtacatt catgtgtgat 3540 tatgcacaaa ttgccacagt tagaacattt aagtggaaaa tatttccata agcagtttat 3600 gagcaacaaa atagggtatg tgatcaagcc tatgagatca taccagagaa agaggggttt 3660 ggttgtcttg tttactaacc accggatagg gaaatagatc aacaaagcta tcaatattaa 3720 tcttatccaa gaaaaattga tgcaggctgt ttgtttataa atgctttttg aatatttgat 3780 tatgcaatct ctaactcttt tgtttgtttt tggtatttta gctgatttgt caccgcacag 3840 gagattgtgc tcaccatcca acatttcttc agtaaaagtg atgcttgctg atccagaaaa 3900 ggatatgacc ttgtgttcca cattttcacc aggctttttt actaaataac ccatgatctt 3960 ctcggggcta gtgatgctaa cagtataggg attggcaaag ttcgatttag ttattttgca 4020 gtcaccagat aactttacag tttgtaatga tactgttcca ttagtagggt acgagttata 4080 ggttatagga taattatctt gtgtcaggct ttctgaaatg aagaattttg ttcctactga 4140 aaaatgcctt ttgttgtcaa gtttggtaat gggaataacc gggactttgg agaatctctt 4200 tggcagattt aaagaattgt cacatttttc taaaccttcc gctgaatcag aaacacagga 4260 atatatgaca ccattatttt ccacttgata ataaacatta taagtggata tcccttttat 4320 ctcacatttt aatgaagaag cattcaagca gttgttagga agatccaaga cagagattgt 4380 tttttgtgta gttgactcag caaaaatagg gatggttgat tcttcttctc gtatttgacg 4440 gattccagga gtctgagatt ccagcatcag attagtcaaa gtctccaaga tagccttgcg 4500 ttgaatcgat gcagcagtgg gcacttcatt ctcagcagaa tcatcataaa cctcaggatg 4560 gtctccacga attatttcta ctttggcatc tgtggctctg aaggtcaaga atgccaacaa 4620 gacagaactc agggcaattg tgaaaagact cacttttacc actagttcta gtagttgtaa 4680 aattctcatc ttagacgtct gctcagatta taatggttat atgattaatt tcaagatgtc 4740 tggattaagg tttttgtttg cactgattgc tct 4773 //