ID AY744486; SV 1; linear; genomic RNA; STD; VRL; 4827 BP. XX AC AY744486; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate NC-3 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4827 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4827 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; d071fcdf100ebac1b96fd96228d2c934. XX FH Key Location/Qualifiers FH FT source 1..4827 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="dahlia" FT /isolate="NC-3" FT /mol_type="genomic RNA" FT /country="USA: North Carolina" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP31" FT /protein_id="AAV28055.1" FT /translation="MLTLFGNKRPSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISGSVAQLSFDEI" FT CDS complement(1336..4743) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP30" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP30" FT /protein_id="AAV28056.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTPGTRQIREEKSTIPISTEPATQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA FT SKEHSSECPILSKEVDHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL FT NCNGCLLCGQGLSCVLEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNLDISVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDAIRVVLLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD FT DEPEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4827 BP; 1548 A; 864 C; 845 G; 1570 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaacta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caagaggcct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggcaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttaac 240 caaagccatg gatgcatcca aagggaagat actgttgaac actgagggaa catcttcttt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgctagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 aaagcaaaat gctaataagg ttatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg 600 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt ctattccaaa 660 gatgaacaac accccagaaa actgttgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaaaggggtt tcttttggta gtgtcatgta ttcttggaca aaagagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtatggt tatacctcta aacagggcca ttagagctag 840 gtctcaagca ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctggcagtg ttgctcagtt atcctttgat gaaatatagt tttttaaaaa 1020 cacttattta agcttaaatt tctgtctatt ttgcatttcg aatccaaaaa accgaaacaa 1080 aaaacaaaaa aacaaaaaga gaaaaacaaa caaaaaaatc aaaccaaaaa acaaaaacaa 1140 aataaggctg aaaagccaaa ctttggtccg aagactcttt ttgttgtttt ttgtttattt 1200 gtattttttg tttgttgttt ttgtttattt catatttgct ttttattagt caatgattga 1260 ttctaaagat ttttatatat ataaaatctt gctaatatag aagatttaat caaatttaat 1320 ctgtgacaag catcctcaga caaggtgaga gaaatccata ggtggccttc gtcttgtcat 1380 tgtatctttc attaacatag gggctttgat ctcaggttca tcatcatcct ctatcttgga 1440 tctagattta taagatttat gctttacata tcctttacaa atggatgtca gaatagaaca 1500 gaaataaatc acaaggaaaa tgaatgcaat aagcagtacc actctgatag catcaaaaaa 1560 tgagccaaag taacttgcaa tgaaattgaa tggactttta atataatccc agaagcccca 1620 tgcagaagaa tcagaattat attgttgttc ttcatgagca tactcatcat tttgatctat 1680 tatattctct ggttcttcta taataacatt attaaccaaa acttccacag atatatccag 1740 attgccttct ggatacagtg tcattttctt cttgtccggg ttggctgaac aaaacattgt 1800 tatattgtat ttattagatc cttttttaac agccagctga taagtagata aagagcaagc 1860 gtctatagaa attgcagtag aaaatgtcaa atctgagaaa aattctaaaa cgcaagataa 1920 accttggccg catagaagac agccgttgca atttaagctt gttgaagtta tggaaggttt 1980 tttaggaaca actttaaaaa gatcagatgg aagatcaact acaattttca gtttccctaa 2040 actaaaagat ttttccagga aaaaactaga gaaatctttg aaactaacag gaatatctga 2100 tatttgttct aaaccagatc taaacctgta tgtgtcatat ccacatgttt taatagtgac 2160 tgattttttt cctattgctg cacaatccca agacatgtca tctccttcta gagttttctt 2220 agtaaaaata ggcactccat catgggtcaa ttgcggatga ccaaacattt tcacaggatc 2280 attcaagttt gcaatatttc cagagtaaat atggctgtca ggtccatgag ctattagttc 2340 acctatagtg ataccatcat tatgcaaatc tgcctgtata tcagcttgaa acaatgtatt 2400 ttcataagga acttcttcag taatccttga gcattgacct cccaaaatac cagaaataca 2460 aacatctgct actatagttg atttgagaac tgaataaatt ctatatgatt tgtccatatc 2520 ataaatattt cgacagaatc cgcatgtagc accctcatta attgcaaaac accaagcttc 2580 ttcacatccc caataagaag ttggtgttat acaaaaatct tggaaacctg ttaaagcttg 2640 atttttcctg caagtgtcgc agtttcctgt acaagtggaa taaaaatccg tatgggtgct 2700 ttggatggga gctgttgtat atttttctga cacttcataa tgaattccca cacttttgat 2760 ataaatcaca aattttttgg ctgtttctga ggtcttgtca tttaacatga atatagttcc 2820 tcctcctccc aaaagagatt gttctatcat atatctatat ttcccgtcta caacagaatc 2880 aaagattaat gattgcctgg gcaggatgtt ctctggtatg cttgtttcat ttttgtctaa 2940 agagtctcct gcaatcattc cagaaatttt gtctgtacga ttataggaat ctattatacc 3000 atttctcaat ctcttagcct catacagacc aactgatgtt aaccctaaag agcttcctgt 3060 ataatccgaa aacccattgt acaaaggttt gttctgaaat aaatctaggt attcgcaacc 3120 taatctgcat tttataagat tatcaataga tgggcgtgca atgcaattct ggttctctat 3180 gcaatcatta ggaccttcta taacaatatt agtgccaaag atactttcta tgatcttgtc 3240 ttcttttaca ttgcagtaac attgatcttt ttcagggcat ttttcaaatt tgcttgtaac 3300 caaaaatgga cagcctggaa cataaaagca tccactcaaa cattgggttg tttgagccat 3360 agacatgggc atctgagaca aaatgactaa acctatcaaa atttcggtca caaattttag 3420 caaactcaag ctcagcttag tgttcactat tagatggaac cattccatgc tagtccactt 3480 atgtttgttg tagtcatgat ctacctcttt ggacaatatg ggacactctg aagaatgctc 3540 ttttgaagct ttgcttttgt tgcaaatgca gactttagta cactcatgtg tgactatgca 3600 caaattgccg cagttagaac atttaaatgg gaaatatttc cataagcaat ttatgagcaa 3660 taagacaggg tatgtgatca agcccataag atcataccag agaaagagag gtttagtcgt 3720 cttgttcact aaccatcgga tagggaaata gatcaacaaa gctatcaata tcaatcttat 3780 ccaagaaaaa ttgatgcagg ctgtttgctt ataaatactt tttgaatatt tgattatgca 3840 atctctgact cttttgtttg tttttggtat tttagctgat ttgtcaccgc acaagagatt 3900 gtgttcacca tccaacattt cctcggtaaa agtgatactt gctgatccag aaaaagctat 3960 aaccttgtgt tccacatttt caccaggttt ttttatcaaa taacccatga tcttctcagg 4020 gctagtgatg ctcacagtat agggatttgc aaagtttgat ttagttattt tgcagtcacc 4080 agataacttt acagtttgta atgatactgt tccattagtg gggtatgagt tgtaagttat 4140 aggataatta tcttgtgtca ggctttctga aatgaagaat tttgttccta ctgaaaaatg 4200 tcttttgttg tcaagtttgg taataggaat aactgggact ttggagaatc tctttggcaa 4260 atttaaagaa ttatcacatt tttctaaacc ttctgctgaa tcagaaacac aggaatatat 4320 gacaccattg ttttcaactt gataataaac attataagta gatatccctt ttatctcaca 4380 ttttaatgag gaagcattca agcagttgtt gggaagatcc aaaacagaga ttgttttttg 4440 cgttgctggc tcagtggaaa tagggatggt tgatttttct tctcgtatct gacgggttcc 4500 aggagtccga gattctagca tcagattagt taaagtctcc aagatagctt cgcgttgaat 4560 cgatgcagca gtgggtacct cattctcagc agaatcatca taaatctcag gatgatctcc 4620 acgaattatt tctactttag catctgtggc tctgaagatc aagaatgcca acaaaacaga 4680 actcagggca attgtgaaaa gactcacttt taccactagt tctagtagtt ttagaattct 4740 catcttagat gtctacccag attacaatgg ttgtgtgatt aatttcaaga tgtctggatt 4800 aaggtttttg tttgcactga ttgctct 4827 //