ID AY744485; SV 1; linear; genomic RNA; STD; VRL; 4766 BP. XX AC AY744485; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-7 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4766 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4766 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 5d5b4c8e63d9a8e7af160968b189b69d. XX FH Key Location/Qualifiers FH FT source 1..4766 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="dahlia" FT /isolate="CA-7" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP33" FT /protein_id="AAV28053.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTIADPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1275..4682) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP32" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP32" FT /protein_id="AAV28054.1" FT /translation="MKILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT IPVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPVLLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHGYDKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVEEDKIIESIFGTNIVIEG FT PNDCIENQNCAAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFPDYTGSSLGLTSVGLYET FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGNDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCILEFFSDLTFSTAIFIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKVMLYPEGNPDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKMEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4766 BP; 1527 A; 856 C; 848 G; 1535 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 tatgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca atagctgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gcgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgac gaaatatagt atttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcatttt aaatcagaaa ccaaaacaaa 1080 aaacaaaaaa gaaaacaaaa aatcaaaaac aaaaaacaaa aacaaaataa ggctgaaaag 1140 ccaaattttg gtccgaagac tctttttgtt gttttttgtt tatttgtatt ttttgtttgt 1200 tttttgttta tttatatata cataatctga ctaatgtaga agattgaatc aaatttagcc 1260 tgtgacaagc agactcagac aaggtgagag aaatccatag gtggccttcg tcttgtcatt 1320 gtatctttca ttaacatagg ggctttgatc tcggaatcat catcatcctc catcttggat 1380 ctagatttat aagattcatt cttgacatat cctttacaaa tggttgttag aatagaacag 1440 aaataaatca caaggaaaat gaatgcaata agcaatacca ctctgatagt atcaaaaaat 1500 gagccaaaat aacttgcaat gaaattgaat gggcttttaa tataatccca gaagccccat 1560 gctgaagaat cagaattata ttgttgttct tcatgagcat actcatcatt ttgatctatt 1620 atgttctctg gttcttctac aataacatta ttgaccagaa cttctacaga aatatccgga 1680 ttgccttctg gatacaacat cactttcttc ttgtccggat tagcagaaca aaacattgtt 1740 atgttgtatt tattagatcc ttttttaaca gccagctgat aagtagatag agagcaagca 1800 tctataaaaa ttgcagtaga aaatgtcaaa tctgagaaaa attctaaaat gcaagataaa 1860 ccttgaccgc atagaagaca gccgttgcaa tttaagcttg ttgaggttat ggaaggtctc 1920 ttaggagcaa ctttaaaaag atcagatgga agatcaacga caatcttgag tttccctaaa 1980 ctgaaagctt tttccaagaa aaaactagag aaatctttga aactaacagg aatatctgat 2040 atttgttcta aaccagatct aaatctgtat gtatcatatc cacatgtttt aatagtgatt 2100 gattttttcc ctattgctgc acaatcccaa gacatatcat ttccttctag agttttctta 2160 gtaaaaatag gcactccatc atgagtcaat tgtgggtgac caaacatttt cacaggatca 2220 ttcaagtttg caatatttcc agaataaata tggctgtcag gtccatgagc tatcagttca 2280 cctatagtga taccatcatt gtgcaaatct gcttgtatat cagcctgaaa caaggcattt 2340 tcataaggaa cctcttcagt aatccttgag cactgacctc ccaaaatacc agaaatacaa 2400 acatctgcca ctatagttga ttttagcact gaataaattc tgtatgattt atccatgtca 2460 tagatattcc gacagaatcc gcatgtagca ccttcattaa ttgcgaaaca ccaagcttct 2520 tcacatcccc aataagaagt tggtgttata caaaaatcct ggaaaccagt taaagcttga 2580 ttttttctgc aagtgtcaca gtttcctgta caagtagaat aaaaatctgt gtgggtgctt 2640 tggataggag ctgttgtgta tttttctgac acttcataat gaattcccac acttttgata 2700 taaatcacaa atttttttgc tgtttctgag gtcttatcat ttaacatgaa tatagtccct 2760 cctcctccta aaagagattg ttctatcatg tatctatatt tcccgtctac aacagaatca 2820 aagatcaatg attgtctagg cagaatgttc tctggtatgc ttgtttcgtt tttgtttaga 2880 gaatctcctg caatcattcc agaaattttg tctgtacgat tataagaatc tattatacca 2940 ttcctcaatc tcttagtctc atacagacca accgatgtta accctaaaga gcttcctgta 3000 taatctggaa acccattata caaaggtttg ttccgaaata aatctaggta ctcgcaaccc 3060 agtctgcatt ttataagatt atcaatagat gggtgtgcag cacaattctg gttctctatg 3120 caatcattag ggccttctat aacaatgtta gtgccaaaga tactttctat aatcttatct 3180 tcttccacat tacagtaaca ttgatctttt tctgggcatt tttcaaattt gcttgtaacc 3240 aaaaatggac agcctggaac ataaaaacat ccactcaaac attgggtagt ttgagccata 3300 gacatgggca tttgagacaa aatgatcaaa cctattaaga tttcagtcac aaatttcagc 3360 aaactaaagc tcagcttagt gttcactatt agatggaacc actccatgct agtccacttg 3420 tgtttgtcat agccatgatc tgtttctttg gacaatatgg gacactctga agaatgttct 3480 tttgaagctt tgcttttgtt gcagatgcaa attttagtac attcatgtgt gattatgcac 3540 aaattgccac agttagaaca tttaaatgga aaatatttcc ataagcaatt tatgagcagc 3600 aaaacagggt atgtgatcaa gcctataaga tcataccaga gaaagagggg tttggttgtc 3660 ttgtttacta accaccggat aggaaaatag atcaacaaag ctatcaatat taatcttatc 3720 caagaaaaat tgatgcaggc tgtttgttta taaatgcttt ttgaatattt gattatgcaa 3780 tctctaactc ttttgtttgt ttttggtatt ttagctgatt tgtcaccgca caagagattg 3840 tgctcaccat ccaacatttc ttcagtaaaa gtgatgcttg ctgatccaga aaaggatatg 3900 accttgtgtt ccacattttc accaggcttt tttatcaaat aacccatgat cttctcgggg 3960 ctagtgatgc taacagtata gggattggca aagtttgatt tagttatttt gcagtcacca 4020 gataacttta cagtttgcaa tgacactgtt ccattagtag ggtacgagtt ataagttata 4080 ggataattat cttgtgtcag gctttctgaa atgaagaatt ttgttccaac tgaaaaatgc 4140 cttttgttgt caagtttggt aatgggaata accgggactt tggagaatct ctttggcaga 4200 tttaaagaat tgtcacattt ttctaaacct tccgctgaat cagaaacaca ggaatatatg 4260 acaccattat tttccacttg ataataaaca ttataagtgg atatcccttt tatctcacat 4320 tttaatgaag aagcattcaa gcagttgtta ggaagatccg agacagggat tgttttttgc 4380 gtagttgact cagcaaaaat agggatggtt gattcttctt ctcgtatctg acgggttcca 4440 ggagtctgag attctagcat cagattagtc aaagtctcca agatagcctt gcgttgaatc 4500 gatgcagcag tgggtacttc attctcagca gaatcatcat aaacctcagg atggtctcca 4560 cgaattattt ctactttggc atctgtggct ctgaagatca agaatgccaa caagacagaa 4620 ctcagggcaa ttgtgaaaag actcactttt accactagtt ctagtagttt taaaattttc 4680 atcttagacg tctgctcaga ttataatggt tatatgatta atttcaagat gtctggatta 4740 aggtttttgt ttgcactgat tgctct 4766 //