ID AY744484; SV 1; linear; genomic RNA; STD; VRL; 4764 BP. XX AC AY744484; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-6 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4764 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4764 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; a941910f937ade4395cc10361c5b3604. XX FH Key Location/Qualifiers FH FT source 1..4764 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="chrysanthemum" FT /isolate="CA-6" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP35" FT /protein_id="AAV28051.1" FT /translation="MLTLFGNKGSSKSARRDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQTANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1273..4680) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP34" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP34" FT /protein_id="AAV28052.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILDTLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHGYDKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEEDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAANPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLVCGRGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4764 BP; 1515 A; 856 C; 854 G; 1539 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaggga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggcaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaacc gcaaataagg tcatcaagat ctgtccaact tgggacagca ggaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgttttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattaagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt attttactgt 1020 cacttattta agcttaaatt tctgttaatt ttgcatttta aatcaaaaac caaaacaaaa 1080 aacaaaaaga aaaacaaaaa tcaaaaacaa aaaacaaaaa caaaataagg ctgaaaagcc 1140 aaactatggt ccgaagactc tttttgttgt tttttgttta tttgtatttt ttgtttgttt 1200 tttgtttatt tatatataca taatctgact aatgtagaag attgaatcaa atttagcctg 1260 tgacaagcag actcagacaa ggtgagagaa atccataggt ggccttcgtc ttgtcattgt 1320 atctttcatt aacatagggg ctttgatctc agaatcatca tcatcctcta tcttggatct 1380 agatttataa gattcattct tgacatatcc tttacaaatg gttgttagaa tagaacagaa 1440 ataaatcaca aggaaaatga atgcaataag caataccact ctgatagtat caaaaaatga 1500 gccaaaataa cttgcaatga aattgaatgg gcttttgata taatcccaga agccccatgc 1560 tgaagaatca gaattatatt gttgttcttc atgagcatac tcatcatttt gatctattat 1620 gttctctggt tcttctacaa taacattatt gaccagaact tctacagaaa tatccggatt 1680 gccttctgga tacaacgtca ttttcttctt gtccggatta gcagaacaaa acattgttat 1740 gttgtattta ttagatcctt ttttaacagc cagctgataa gtagatagag agcaagcatc 1800 tatagaaatt gcagtagaaa atgtcagatc tgagaaaaat tctaaaatgc aagataaacc 1860 tcgaccgcat acaagacagc cgttgcaatt taagcttgtt gaggttatgg aaggtctctt 1920 aggagcaact ttaaaaagat cagatggaag atcgacgaca atcttgagtt tccctaaact 1980 gaaagctttt tccaagaaaa aactagagaa atctttgaaa ctaacaggaa tatctgatat 2040 ttgttctaaa ccagatctaa atctgtatgt atcatatcca catgttttaa tagtgattga 2100 ttttttccct attgctgcac aatcccaaga catatcgtct ccttctagag tttttttagt 2160 aaaaataggc actccatcat gagtcaattg tgggtgacca aacattttca caggatcatt 2220 caagtttgca atatttccag aataaatatg gctgtcaggt ccatgagcta tcagttcacc 2280 tatagtgata ccgtcattgt gcaaatctgc ttgtatatca gcttgaaaca aggcattttc 2340 ataaggaacc tcttctgtaa tccttgagca ctgacctccc aaaataccag aaatacagac 2400 atctgccact atagttgatt ttagcactga ataaattctg tatgatttat ccatgtcata 2460 gatattccga cagaatccgc atgtagcacc ttcattaatt gcaaaacacc aagcttcttc 2520 acatccccaa taagaagttg gtgttataca aaaatcctgg aaaccagtta aagcttgatt 2580 ttttctgcaa gtgtcacagt ttcctgtgca agtggaataa aaatctgtgt gggtgctttg 2640 gataggagct gttgtgtatt tttctgacac ttcataatga attcccacac ttttgatata 2700 aatcacaaat ttttttgctg tttctgaggt cttatcattt aacatgaata tagtccctcc 2760 tcctcctaaa agagattgtt ctatcatgta tctatatttc ccgtctacaa cagaatcaaa 2820 gatcaatgat tgtctaggca gaatgttctc tggtatgctt gtttcgtttt tgtttagaga 2880 atctcctgca atcattccag aaattttgtc tgtacgatta taagaatcta ttataccatt 2940 cctcaatctc ttagcctcat acagaccaac cgatgttaac cctaaagagc ttcctgtata 3000 atctgaaaac ccattataca aaggtttgtt ccggaataaa tctaggtact cgcaacccag 3060 tctgcatttt ataagattat caatagatgg gtttgcagca caattctggt tctctatgca 3120 atcattaggt ccttctataa caatgttagt gccaaagata ctttctataa tcttatcttc 3180 tttcacatta cagtaacatt gatcttcttc tgggcatttt tcaaatttgc ttgtaaccaa 3240 aaacggacag cctgggacat aaaaacatcc actcaaacat tgggtagttt gagccataga 3300 catgggcatt tgagacaaaa tgatcaaacc tattaagatt tcagtcacaa atttcagcaa 3360 actaaagctc agcttagtgt tcactattag atggaaccat tccatgctag tccacttgtg 3420 tttgtcgtag ccgtgatctg tttctttgga caatatggga cactctgaag aatgttcttt 3480 tgaagctttg cttttgttgc agatgcaaat tttagtacat tcatgtgtga ttatgcacaa 3540 attgccacag ttagaacatt taaatggaaa atatttccat aagcaattta tgagcagcaa 3600 aatagggtat gtgatcaagc ctataagatc ataccagaga aagaggggtt tggttgtctt 3660 gtttactaac caccggatag ggaaatagat caacaaagct atcaatatta atcttatcca 3720 agaaaaattg atgcaggctg tttgtttata aatgcttttt gaatatttga ttatgcaatc 3780 tctaactctt ttgtttgttt ttggtatttt agctgatttg tcaccgcaca agagattgtg 3840 ctcaccatcc aacatttctt cagtaaaagt gatgcttgct gatccagaaa aggatatgac 3900 cttgtgttcc acattttcac caggcttttt tatcaaataa cccatgatct tctcgggact 3960 agtgatgcta acagtatagg gattggcaaa gtttgattta gttattttgc agtcaccaga 4020 taactttaca gtttgcaatg atactgttcc attagtaggg tacgagttat aagttatagg 4080 ataattatct tgtgtcaggc tttctgaaat gaagaatttt gttccaactg aaaaatgcct 4140 tttgttgtca agtttggtaa tgggaataac cgggactttg gagaatctct ttggcagatt 4200 taaagaattg tcacattttt ctaaaccttc cgctgaatca gaaacacagg aatatatgac 4260 accattattt tccacttgat aataaacatt ataagtggat atccctttta tctcacattt 4320 taatgaagaa gcattcaagc agttgttagg aagatccgag acagagattg ttttttgtgt 4380 agttgactca gcaaaaatag ggatagttga ttcttcttct cgtatctgac gggttccggg 4440 agtctgagat tctagcatca gattagtcaa agtatccaag atagccttgc gttgaatcga 4500 tgcagcagtt ggtacttcat tctcagcaga atcatcgtaa acctcaggat ggtctccacg 4560 aattatttct actttagcat ctgtggctct gaagatcaag aatgccagca agacagaact 4620 cagggcaatt gtgaaaagac tcacttttac cactagttct agtagtttca aaattctcat 4680 cttagacgtc tgctcagatt ataatggtta tatgattaat ttcaagatgt ctggattaag 4740 gtttttgttt gcactgattg ctct 4764 //