ID AY744481; SV 1; linear; genomic RNA; STD; VRL; 4768 BP. XX AC AY744481; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-3 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4768 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4768 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; ff9f4c825cf976f1132a6091bfe3346e. XX FH Key Location/Qualifiers FH FT source 1..4768 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="chrysanthemum" FT /isolate="CA-3" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:O55646" FT /protein_id="AAV28037.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1277..4684) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP40" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP40" FT /protein_id="AAV28038.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVSTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT IPVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPVLLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHGYDKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFPDYTGSSLGLTSVGLYET FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETNIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELVAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKVTLYPEGNLDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4768 BP; 1529 A; 850 C; 849 G; 1540 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 tatgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccttggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt atttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcatttt aaatcagaaa ccaaaacaaa 1080 aaacaaaaaa agaaaaacaa aaaatcaaaa acaaaaaaca aaaacaaaat aaggctgaaa 1140 agccaaattt tggtccgaag actctttttg ttgttttttg tttatttgta ttttttgttt 1200 gttttttgtt tatttatata tacataatct gactaatgta gaagattgaa tcaaatttag 1260 cctgtgacaa gcagactcag acaaggtgag agaaatccat aggtggcctt cgtcttgtca 1320 ttgtatcttt cattaacata ggggctttga tctcggaatc atcatcatcc tctatcttgg 1380 atctagattt ataagattca ttcttgacat atcctttaca aatggttgtt agaatagaac 1440 agaaataaat cacaaggaaa atgaatgcaa taagcaatac cactctgata gtatcaaaaa 1500 atgagccaaa ataacttgca atgaaattga atgggctttt aatataatcc cagaagcccc 1560 atgctgaaga atcagaatta tattgttgtt cttcatgagc atactcatca ttttgatcta 1620 ttatgttctc tggttcttct acaataacat tattgaccag aacttctaca gaaatatcca 1680 gattgccttc tggatacaac gtcactttct tcttgtccgg attagcagaa caaaacattg 1740 ttatgttgta tttattagat ccttttttaa cagccagctg ataagtagat agagagcaag 1800 catctataga aattgcagta gaaaatgtca aatctgagaa aaattctaaa atgcaagata 1860 aaccttgacc acatagaaga cagccgttgc aatttaagct tgttgaggtt atggaaggcc 1920 tcttaggagc aactttaaaa agatcagatg gaagatcaac aacaatcttg agtttcccta 1980 aactgaaagc tttttccaag aaaaaactag agaaatcttt gaaactaacg ggaatatctg 2040 atatttgttc taaaccagat ctaaatctgt atgtatcata tccacatgtt ttaatagtga 2100 ttgatttttt ccctattgct gcgcaatccc aagacatatc atctccttct agagttttct 2160 tagtaaaaat aggcactcca tcatgagtca attgtgggtg accaaacatt ttcacaggat 2220 cattcaagtt tgcaatattt ccagaataaa tatggctgtc aggtccatga gctaccagtt 2280 cacctatagt gataccatca ttgtgcaaat ctgcttgtat atcagcttga aacaaggcat 2340 tttcataagg aacctcttca gtaatccttg agcactgacc tcccaagata ccagaaatac 2400 aaacatctgc cactatagtt gattttagca ctgaataaat tctgtatgat ttatccatgt 2460 catagatatt ccgacagaat ccgcatgtag caccttcatt aattgcaaaa caccaagctt 2520 cttcacatcc ccaataagaa gttggtgtta tacaaaaatc ctggaaacca gttaaagctt 2580 gattttttct gcaagtgtca cagttccctg tacaagtaga ataaaaatct gtgtgggtgc 2640 tttggatagg agctgttgtg tatttttctg acacttcata atgaattccc acacttttga 2700 tataaatcac aaattttttt gctgtttctg aggtcttatc atttaacatg aatatagtcc 2760 ctcctcctcc taaaagagat tgttctatca tgtatctata tttcccgtct acaacagaat 2820 caaagatcaa tgattgtcga ggcagaatgt tctctggtat gtttgtttcg tttttgttta 2880 gagaatctcc tgcaatcatt ccagaaattt tgtctgtacg attataagaa tctattatac 2940 cattcctcaa tctcttagtc tcatacagac caaccgatgt taaccctaaa gagcttcctg 3000 tataatctgg aaacccatta tacaaaggtt tgttccgaaa taaatctagg tactcgcaac 3060 ccagtctgca ttttataaga ttatcaatag atgggtgtgc agcacaattc tggttctcta 3120 tgcaatcatt agggccttct ataacaatgt tagtgccaaa gatactttct ataatcttat 3180 cttctttcac attacagtaa cattgatctt tttctgggca tttttcaaat ttgcttgtaa 3240 ccaaaaatgg acagcctgga acataaaaac atccactcaa acattgggta gtttgagcca 3300 tagacatggg catttgagac aaaatgatca aacctattaa gatttcagtc acaaatttca 3360 gcaaactaaa gctcagctta gtgttcacta ttagatgaaa ccattccatg ctagtccact 3420 tgtgtttgtc atagccatga tctgtttctt tggacaatat gggacactct gaagaatgtt 3480 cttttgaagc tttgcttttg ttgcagatgc aaattttagt acattcatgt gtgattatgc 3540 acaaattgcc acagttagaa catttaaatg gaaaatattt ccataagcaa tttatgagca 3600 gcaaaacagg gtatgtgatc aagcctataa gatcatacca gagaaagagg ggtttggttg 3660 tcttgtttac taaccaccgg atagggaaat agatcaacaa agctatcaat attaatctta 3720 tccaagaaaa attgatgcag gctgtttgtt tgtaaatgct ttttgaatat ttgattatgc 3780 aatctctaac tcttttgttt gtttttggta ttttagctga tttgtcaccg cacaagagat 3840 tgtgctcacc atccaacatt tcttcagtaa aagtgatgct tgctgatcca gaaaaggata 3900 tgaccttgtg ttccacattt tcaccaggct tttttatcaa ataacccatg atcttctcgg 3960 ggctagtgat gctaacagta tagggattgg caaagtttga tttagttatt ttgcagtcac 4020 cagataactt tacagtttgc aatgatactg ttccattagt agggtacgag ttataagtta 4080 taggataatt atcttgtgtc aggctttctg aaatgaagaa ttttgttcca actgaaaaat 4140 gccttttgtt gtcaagtttg gtaatgggaa taaccgggac tttggagaat ctctttggca 4200 gatttaaaga attgtcacat ttttctaaac cttccgctga atcagaaaca caggaatata 4260 tgacaccatt attttccact tgataataaa cattataagt ggatatccct tttatctcac 4320 attttaatga agaagcattc aagcagttgt taggaagatc cgagacaggg attgttttct 4380 gtgtagttga ctcagcaaaa atagggatgg ttgattcttc ttctcgtatc tgacgggttc 4440 caggagtctg agattctagc atcagattag tcaaagtctc taagatagct ttgcgttgaa 4500 tcgatgcagc agtggatact tcattctcag cagaatcatc ataaacctca ggatggtctc 4560 cacgaattat ttctactttg gcatctgtgg ctctgaagat caagaatgcc aacaagacag 4620 aactcagggc aattgtgaaa agactcactt ttaccactag ttctagtagt tttaaaattc 4680 tcatcttaga cgtctgctca gattataatg gttatatgat taatttcaag atgtctggat 4740 taaggttttt gtttgcactg attgctct 4768 //