ID AY744480; SV 1; linear; genomic RNA; STD; VRL; 2923 BP. XX AC AY744480; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate SPAIN-2 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2923 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2923 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; f770495af129b6764fac6406adc772f2. XX FH Key Location/Qualifiers FH FT source 1..2923 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="tomato" FT /isolate="SPAIN-2" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP43" FT /protein_id="AAU95408.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEEDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT TCIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTSGKLDLGERTLNYSEDAYKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI FT KEAYASGSK" FT gene complement(1996..2772) FT /gene="Nc" FT CDS complement(1996..2772) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP42" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP42" FT /protein_id="AAU95409.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 2923 BP; 925 A; 548 C; 472 G; 978 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcacgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacag accgattcca gctccaagaa gaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaaag tcgcaggaga 900 tgagacaaat aaaacgtttt atttatctat tacctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctt ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgttcatgc tttgcttgaa actcacacat cttttgcaca 1140 ggttctttgc aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct 1200 aacttctgga aagctagatt taggtgaaag aaccttgaat tacagtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttatttagac agcatccaaa ttccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat aatcttgcta 1500 tgtccagctt ttcctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tgtttgtcat ttctttcaaa ttcctcctgt ctagtagaaa ccataaaaac aaaaataaaa 1620 ataaaataaa atcaaaataa aataaaaatt aaaaaatgaa ataaaaacaa caaaaaaata 1680 aaaaacaaaa aaccaaaaaa gatcccgaaa gggacaattt tggccaaatt tgggttttgt 1740 ttttgttttt tgttttttgt tttttgtttt tatttttatt tatttatttt tattttattt 1800 tattttattt ttgtttttat tttatgtttt ttgttgtttt tgttattttg ttatttatta 1860 agcacaacac acagaaagca aactttaatt aaacacactt atttaaaatt taacacacta 1920 agcaagcaca agcaataaag ataaagaaag ctttacatat ttataggctt tttataattt 1980 aacttacagc tgcttttaag caagttctgt gagttttgct tgttttttaa ccccaaacat 2040 ttcatagaac ttgttaagag tttcactgta atgttccata gcaatacttc ctttagcatt 2100 aggattgctg gagctaagta tagcagcata ctctttcccc ttcttcacct gatcttcatt 2160 catctcaaat gctttgcttt tcagcacagt gcaaactttt cctaaagctt ccctggtgtc 2220 atacttcttt gggtcgatcc cgaggtcctt gtattttgca tcttgatata tagccaagac 2280 aacactgatc atctcaaagc tatcaactga agcaataaga ggtaagctac ctcccagcat 2340 tatggcaagc ctcacagact ttgcatcatc aagaggtaat ccataggctt gaatcaaagg 2400 gtgggaagca atcttagatt tgatagtatt gagattctca gaattcccag tttcctcaac 2460 aagcctgacc ctgatcaagc tatcaagcct tctgaaggtc atgtcagtgg ctccaatcct 2520 gtctgaagtt ttctttatgg taattttacc aaaagtaaaa tcactctgct taataacctt 2580 cattatgctc tgacgattct tcaggaatgt cagacatgaa ataacgctca tctttttgat 2640 ctggtcaagg ttttccagac aaaaagtctt gaagttgaat gctaccagat tctgatcttc 2700 ctcaaactca aggtctttgc cttgtgtcaa caaagcaaca atgctttcct tagtgagctt 2760 aaccttagac atgatgatcg tagaagttgt tatatgctct gaccgtatgt gattcaaggt 2820 gcaaaagtgc aactctgtat cccgcagtcg tttcttaggg ttttaatgtg atgatttgta 2880 agactgagtg ttaaggtttg aataaaattg acacaattgc tct 2923 //