ID AY744479; SV 1; linear; genomic RNA; STD; VRL; 2922 BP. XX AC AY744479; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate SPAIN-1 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2922 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2922 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 183cbce3de2a5c7de6769ad4f79deabc. XX FH Key Location/Qualifiers FH FT source 1..2922 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="tomato" FT /isolate="SPAIN-1" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP45" FT /protein_id="AAU95406.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTSGKLDLGERTLNYSEDAYKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSIPVAKSLLKLDLSGIKKKESKI FT KEAYASGSK" FT gene complement(1995..2771) FT /gene="Nc" FT CDS complement(1995..2771) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP42" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP42" FT /protein_id="AAU95407.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 2922 BP; 922 A; 552 C; 475 G; 973 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa tagccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcacgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa agtgggggat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggc catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaaag tcgcaggaga 900 tgagacaaat aaaacatttt atttatccat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctt ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgttcatgc tttgcttgaa actcacacat cttttgcaca 1140 ggttctttgc aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct 1200 aacttctgga aagctagatt taggtgaaag aaccttgaat tacagtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttatttagac agcatccaaa ttccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattc cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgcta 1500 tgtccagctt ttcctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tgtttgtcat ttctttcaaa ttcctcctgt ctagtagaaa ccataaaaac aaaaataaaa 1620 ataaaataaa atcaaaataa aataaaaatc aaaaaatgaa ataaaaacaa caaaaaaata 1680 aaaaacaaaa aaccaaaaaa gatcccgaaa gggacaattt tggccaaatt tgggttttgt 1740 ttttgttttt tgttttttgt tttttgtttt tatttttatt tatttatttt attttatttt 1800 attttatttt tgtttttatt ttatgttttt tgttgttttt gttattttgt tatttattaa 1860 gcacaacaca cagaaagcaa actttaatta aacacactta tttaaaattt aacacactaa 1920 gcaagcacaa gcaataaaga taaagaaagc tttatatatt tataggcttt ttataattta 1980 acttacagct gcttttaagc aagttctgtg agttttgcct gttttttaac cccaaacatt 2040 tcatagaact tgttaagagt ttcactgtaa tgttccatag caatacttcc tttagcatta 2100 ggattgctgg agctaagtat agcagcatac tctttcccct tcttcacctg atcttcattc 2160 atctcaaatg ctttgctttt cagcacagtg caaacttttc ctaaagcttc cctggtgtca 2220 tacttctttg ggtcgatccc gaggtccttg tattttgcat cctgatatat agccaagaca 2280 acactgatca tctcaaagct atcaactgaa gcaataagag gtaagctacc tcccagcatt 2340 atggcaagcc tcacagactt tgcatcatca agaggtaatc cataggcttg aatcaaaggg 2400 tgggaagcaa tcttagattt gatagtattg agattctcag aattcccagt ttcctcaaca 2460 agcctgaccc tgatcaagct atcaagcctt ctgaaggtca tgtcagtggc tccaatcctg 2520 tctgaagttt tctttatggt aattttacca aaagtaaaat cactctgctt gataaccttc 2580 attatgctct gacgattctt caggaatgtc agacatgaaa taacgctcat ctttttgatc 2640 tggtcaaggt tttccagaca aaaagtcttg aagttgaatg ctaccagatt ctgatcttcc 2700 tcaaactcaa ggtctttgcc ttgtgtcaac aaagcaacaa tgctttcctt agtgagctta 2760 accttagaca tgatgatcgt agaagttgtt atatgctctg accgtatgtg attcaaggtg 2820 caaaagtgca actctgtatc ccgcagtcgt ttcttagggt tttaatgtga tgatttgtaa 2880 gactgagtgt taaggtttga ataaaattga cacaattgct ct 2922 //