ID AY744478; SV 1; linear; genomic RNA; STD; VRL; 2954 BP. XX AC AY744478; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate NC-3 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2954 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2954 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; f0611a764caf7aa74578f3dd6da80bf7. XX FH Key Location/Qualifiers FH FT source 1..2954 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="dahlia" FT /isolate="NC-3" FT /mol_type="genomic RNA" FT /country="USA: North Carolina" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP47" FT /protein_id="AAU95404.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSSLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQPVSVAKSLLKLDLSGIEKKESKI FT PETYASGSK" FT gene complement(2027..2803) FT /gene="Nc" FT CDS complement(2027..2803) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="AAU95405.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2954 BP; 937 A; 549 C; 476 G; 992 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggcactg gttcttcact agttcaaacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcattaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatc gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc ctaacaggaa 660 tgtccatgaa tggctgtaca gtttcaagcc aagtttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagggtccca aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga 900 cgaaacaaat aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctc ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttac aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttggac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 gatttcccca caacctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 cgaaaagaaa gaatctaaga ttccggaaac atatgcttca ggatcaaaat aatcttgctg 1500 tgtccggttt ttctaattat gttatgttta ttttctttct ttacttataa ttatttctct 1560 gtttgtcatt tcttttaagt ttctcctgtt taatagaaac cataaaacaa aaaataaaat 1620 aaaaataaaa tcaaaaatga aacaaaaatc aaaaaatgaa acaaaaataa aaaataaaaa 1680 tgaaataaaa acaacaaaaa aattaaaaaa caaaaaccca aaaaagatcc cgaaagggac 1740 aatcttggcc aaatttgggt tttgttttgt ttttgttttt tgttttttgt ttttattttt 1800 attttattta tttattttat tttattttta ttttttattt gttttttatt ttatgttttt 1860 tgttgttttt gttattttgt ttatttatta agcataacac acagaaagca aactttaatt 1920 aaacacactt attttaaatt taacacacta agcaagcaca agcaataaag ataaagaaag 1980 ctttatatat ttgtagactt ttccataatt taacttacag ctgattttaa gcaagttctg 2040 cgagttttgc ctgtttttta accccgaaca tttcatagaa cttgttaaga gtttcactgt 2100 aatgttccat agcaatactt cctttagcat taggattgct ggagctgagt atagcagcat 2160 actcctttcc tttcttcacc tgatcttcat tcatttcaaa tgctttgctt ttcagcacag 2220 tgcaaacttt ccctaaggct tctctggtgt catacttctt tgggtcaatc ccgaggtctt 2280 tgtattttgc atcctgatat atagccaaga caacactgat catctcaaag ctatcaactg 2340 aagcaataag aggtaagcta cctcccagca ttatggcaag cctcacagac tttgcatcat 2400 caagaggtaa tccataggct tgaatcaaag ggtgggaagc aatcttagat ttgatagtat 2460 tgagattctc agaattccca gtttcctcta caagcctgac cctgatcaag ctatcaagcc 2520 ttctgaaggt catgtcagtg gctccaatcc tgtctgaagt tttctttatg gtaattttac 2580 caaaagtaaa atcactttgt ttaataacct tcattatact ctgacgattc ttcaggaatg 2640 tcagacatga aataacgctc atcttcttga tctggtcgag gttttccaga caaaaagtct 2700 tgaagttgaa tgctaccaga ttctgatctt cctcaaactc aaggtctttg ccttgtgtca 2760 acaaagcaac aatgctttcc ttagtgagct taaccttaga catgatgatt gtagaagttg 2820 ttatatgctt tgaccgtatg taattcaagg tgcgaaagtg caactctgta ttccgcagtc 2880 gtttcttagg gttttaatgt gatgatttgt aagactgagt gttaaggttt gaataaaatt 2940 gacacaattg ctct 2954 //