ID AY744477; SV 1; linear; genomic RNA; STD; VRL; 3021 BP. XX AC AY744477; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate NC-2 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3021 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-3021 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; f28dcded8921afe3f84ea1f6af3f8f58. DR EuropePMC; PMC3988053; 24736614. XX FH Key Location/Qualifiers FH FT source 1..3021 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="peanut" FT /isolate="NC-2" FT /mol_type="genomic RNA" FT /country="USA: North Carolina" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP49" FT /protein_id="AAU95402.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMSRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLSNNLQEDVIIYTLNNHELTPGKLDLGERTLNYSEDAYKRKYFLSKT FT LECLPTNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKV FT KEAYASGSK" FT gene complement(2094..2870) FT /gene="Nc" FT CDS complement(2094..2870) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q9YIT0" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q9YIT0" FT /protein_id="AAU95403.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLGNLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMTEDQVKKGKEYAAILSSS FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 3021 BP; 945 A; 559 C; 485 G; 1032 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaaaactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt caatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgactcaag 240 aagcaaaagt agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cattctattg gatctatcat 480 gagcagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gttaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgagacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaattcgta aatgcaaagc 1020 tcctttcgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 cccttcatat ccccaaagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttcttagc aacaatttgc aagaagatgt gatcatttac accttgaaca accatgagct 1200 aacccctgga aagttagatt taggtgaaag aaccttgaat tacagtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca actaacacac aaactatgtc 1320 ttatttagac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg cagtctattt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaagg ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tgtccagcct tttctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tatttgtcat ttctttcaaa ttcctcctgt ctagtagaaa ccataaaaac aaaaataaaa 1620 ataaaataaa atcaaaataa aataaaatca aaaaatgaaa taaaaaacaa aaaatattaa 1680 caaaaaaacc caaaaagatc ccgaaaggga caattttggc caaatttggg tttgtttttg 1740 ttgttttttg ttttttgttt tttgttttta ttttatttta ttttatttat ttttatttta 1800 tttttgtttt tatcttatgt ttttttgttg tttttgttat tttgttattt attaagcaca 1860 acacacagaa agcaaacttt attttatttt atttatttta ttttattttt gttcttatct 1920 tatgtttttt gttgtttttg ttattttgtt atttattaag cataacacac agaaagcaaa 1980 ctttaattaa acacacttat ttaaaattta acacactaag caagcataag caataaagat 2040 aaagaaagct ttatatattt ataggctttg tataatttaa cttacagctg cttttaggca 2100 agttctgtga gttttgcctg ttttttaacc ccaaacattt catagaactt gttaagagtt 2160 tcactgtaat gttccatagc aacacttcct ttagcattag gattgctgga actaagtata 2220 gcagcatact ctttcccctt cttcacctga tcttcagtca tttcaaatgc tttgcttttc 2280 agcacagtgc aaactttccc taaggcttcc ctggtgtcat acttcttcgg gtcaatcccg 2340 aggtccttgt attttgcatc ctgatatata gccaagacaa cactgatcat ctcaaagcta 2400 tcaactgaag caataagagg taagctacct cctagcatta tggcaagcct cacagacttt 2460 gcatcatcaa gaggtaatcc ataggcttga atcaaagggt gggaagcaat cttagatttg 2520 atagtattga gattctcaga attcccagtt tcctcaacaa gcctgaccct gatcaagcta 2580 tcaagccttc tgaaggtcat gtcagtggct ccaatcctgt ctgaagtttt ctttatggta 2640 attttaccaa aagtaaaatc actttgctta ataaccttca ttatgctctg acgattcttc 2700 aggaatgtca gacatgaaat aatgctcatc tttttgatct ggtcaaggtt tcctagacaa 2760 aaagtcttga agttgaatgc taccagattc tgatcctcct caaactcaag gtctttgcct 2820 tgtgtcaaca aagcaacaat gctttcctta gtgagcttaa ccttagacat gatgatcgta 2880 gaagttgtta tatgctttga ccgtatgtaa ttcaaggtgc aaaagtgcaa ctctgtatcc 2940 cgcagtcgtt tcttagggtt ttaatgtgat gatttgtaag actgagtgtt aaggtttgaa 3000 taaaattgac acaattgctc t 3021 //