ID AY744476; SV 1; linear; genomic RNA; STD; VRL; 2959 BP. XX AC AY744476; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate NC-1 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2959 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2959 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 73bebc9ac9edad826936b021fe48ddc9. XX FH Key Location/Qualifiers FH FT source 1..2959 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="dahlia" FT /isolate="NC-1" FT /mol_type="genomic RNA" FT /country="USA: North Carolina" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP51" FT /protein_id="AAU95400.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQALCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLGSIQIPSWKIDFARGEIKISPQPVSVAKSLLKLDLSGIEKKESKI FT PETYASGSK" FT gene complement(2032..2808) FT /gene="Nc" FT CDS complement(2032..2808) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="AAU95401.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2959 BP; 936 A; 552 C; 480 G; 991 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataaggac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggcactg gttctccact agttcaaacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcattaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgcccagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatc gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc ctaacaggaa 660 tgtccatgaa tggctgtaca gtttcaagcc aagtttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagggtccca aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga 900 cgaaacaaat aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctc ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agctctttgc aacaacttac aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttgggc agcatccaga tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 gatttcccca caacctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 cgaaaagaaa gaatctaaga ttccggaaac atatgcttca ggatcaaaat aatcttgctg 1500 tgtccggttt ttctaattat gttatgttta ttttctttct ttacttataa ttatttctct 1560 gttttgtcat ttcttttaag ttcctcctgt ttaatagaaa ccataaaaca aaaaataaaa 1620 aataaaaata aaatcaaaaa tgaaacaaaa atcaaaaaat gaaacaaaaa taaaaaataa 1680 aaaatgaaat aaaaacaaca aaaaaattaa aaaacaaaaa cccaaaaaag atcccgaaag 1740 ggacaatctt ggccaaattt gggttttgtt ttgtttttgt tttttgtttt ttgtttttat 1800 ttttatttta tttatttatt ttattttatt tttatttttt attttgtttt ttattttatg 1860 ttttttgttg tttttgttat tttgtttatc tattaagcat aacacacaga aagcaaactt 1920 taattaaaca cacttatttt aaatttaaca cactaagcaa gcacaagcaa taaagataaa 1980 gaaagcttta tatatttgta gacttttcca taatttaact tacagctgat tttaagcaag 2040 ttctgcgagt tttgcctgtt ttttaacccc gaacatttca tagaacttgt taagagtttc 2100 actgtaatgt tccatagcaa tacttccttt agcattagga ttgctggagc tgagtatagc 2160 agcatactct tttcctttct tcacctgatc ttcattcatt tcaaatgctt tgcttttcag 2220 cacagtgcaa acttttccta aggcttctct ggtgtcatac ttctttgggt caatcccgag 2280 gtctttgtat tttgcatcct gatatatagc caagacaaca ctgatcatct caaagctatc 2340 aactgaagca ataagaggta agctacctcc cagcattatg gcaagcctca cagactttgc 2400 atcatcaaga ggtaatccat aggcttgaat caaagggtgg gaagcaatct tagatttgat 2460 agtattgaga ttctcagaat tcccagtttc ctctacaagc ctgaccctga tcaagctatc 2520 aagccttctg aaggtcatgt cagtggctcc aatcctgtct gaagttttct ttatggtaat 2580 tttaccaaaa gtaaaatcac tttgtttaat aaccttcatt atactctgac gattcttcag 2640 gaatgtcaga catgaaataa cgctcatctt cttgatctgg tcgaggtttt ccagacaaaa 2700 agtcttgaag ttgaatgcta ccagattctg atcttcctca aactcaaggt ctttgccttg 2760 tgtcaacaga gcaacaatgc tttccttagt gagcttaacc ttagacatga tgattgtaga 2820 agttgttata tgctttgacc gtatgtaatt caaggtgcga aagtgcaact ctgtattccg 2880 cagtcgtttc ttagggtttt aatgtgatga tttgtaagac tgagtgttaa ggtttgaata 2940 aaattgacac aattgctct 2959 //