ID AY744475; SV 1; linear; genomic RNA; STD; VRL; 2923 BP. XX AC AY744475; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CO segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2923 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2923 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 1c629e298437ec6c1b82aca576257e8e. DR EuropePMC; PMC5013717; 27656190. XX FH Key Location/Qualifiers FH FT source 1..2923 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="falso lulo" FT /isolate="CO" FT /mol_type="genomic RNA" FT /country="USA: Colorado" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP53" FT /protein_id="AAU95398.1" FT /translation="MSSSVYESIIQARASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANRGFLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPGKLDLGERTLNYSEDAYKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI FT KEAYASGSK" FT gene complement(1996..2772) FT /gene="Nc" FT CDS complement(1996..2772) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP52" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP52" FT /protein_id="AAU95399.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLVQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQVKLTELA" XX SQ Sequence 2923 BP; 925 A; 550 C; 472 G; 976 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 ggcaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc caactgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatatcacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acagaggctt tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctttggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgagacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgttcatgc tctgcttgaa actcacacat ctttcgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttgaat tacagtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttatttagac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tgtccagctt tttctaatta tgttatgttt attttctttc tttacttaca attatttctc 1560 tgtttgtcat ttctttcaaa tttctcctgt ctagtagaaa ccataaaaac aaaaataaaa 1620 ataaaataaa tcaaaataaa ataaaaatca aaaaatgaaa taaaaacaac aaaaaaataa 1680 aaaacaaaaa accaaaaaag atcccgaaag ggacaatttt ggccaaattt gggttttgtt 1740 tttgtttttt gtttttgttt tttgtttttt atttttattt tatttatttt attttatttt 1800 attttatttt tgttcttatt ttatgttttt tgttgttttt gttattttgt tatttatcaa 1860 gcacaacaca cagaaagcaa actttaatta aacacactta tataaaattt aacacactaa 1920 gcaagcacaa gcaataaaga taaagaaagc tttatatatt tataggcttt tttataattt 1980 aacttacagc tgtttttaag caagttctgt gagttttacc tgttttttaa ccccaaacat 2040 ttcatagaac ttgttaagag tttcactgta atgttccata gcaatacttc ctttagcatt 2100 aggattgctg gagctaagta tagcggcata ctctttcccc ttcttcacct gatcttcatt 2160 catttcaaat gctttgcttt tcagcacagt gcaaactttt cctaaggctt ccctggtgtc 2220 atacttcttt gggtcgatcc cgaggtcctt gtattttgca tcctgatata tagccaagac 2280 aacactgatc atctcaaagc tatcaactga agcaataaga ggtaagctac ctcccagcat 2340 tatggcaagc ctcacagact ttgcatcatc aagaggtaat ccataggctt gaaccaaagg 2400 gtgggaagca atcttagatt tgatagtatt gagattctca gaattcccag tttcctcaac 2460 aagcctgacc ctgatcaagc tatcaagcct tctgaaggtc atgtcagtgg ctccaatcct 2520 gtctgaagtt ttctttatgg taattctacc aaaagtaaaa tcactttgct taataacctt 2580 cattatgctc tgacgattct tcaggaatgt cagacatgaa ataacgctca tctttttgat 2640 ctggtcaagg ttttccagac aaaaagtctt gaagttgaat gctaccagat tctgatcttc 2700 ctcaaactca aggtctttgc cttgtgtcaa caaagcaaca atgctttcct tagtgagctt 2760 aaccttagac ataatgatcg tagaagttgt tatatgcttt gaccgtatgt aattcaagat 2820 gcaaaagtgc aactctgtat cccgcagtcg tttcttaggg ttttaatgtg atgatttgta 2880 agactgagtg ttaaggtttg aataaaattg acacaattgc tct 2923 //