ID AY744474; SV 1; linear; genomic RNA; STD; VRL; 2927 BP. XX AC AY744474; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-7 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2927 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2927 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; fee8f5cf62918b434c3b55fabf74f613. XX FH Key Location/Qualifiers FH FT source 1..2927 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="dahlia" FT /isolate="CA-7" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP55" FT /protein_id="AAU95396.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCGAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGETTLNYGEDAYKRKYFLSKT FT LECLPSNTQTISYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSRIKKKESKI FT KEAYASGSK" FT gene complement(2000..2776) FT /gene="Nc" FT CDS complement(2000..2776) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP64" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP64" FT /protein_id="AAU95397.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 2927 BP; 934 A; 552 C; 466 G; 975 T; 0 other; agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt caatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagc agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga 300 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta atggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gacattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct actcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaagttttga agcaaatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaattcgta aatgtggagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgtccatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct 1200 aactcctaga aagttagatt taggtgaaac aaccttgaat tacggtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatttc 1320 ttatttagac agcatccaaa tcccctcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattt cagttgcaaa atctttgtta aagcttgatt taagcaggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tgtccatcgt tttctaatta tgtcatgttt atttctttct ttacttataa ttatttctct 1560 gtttgtcatt tctttcaaat tcctcctgtc tagtagaaac cataaaacaa aaataaaaaa 1620 taaaaaataa ataaaatcaa aataaaataa aaatcaaaaa atgaaataaa aacaacaaaa 1680 aaattaaaaa caaaaaacca aaaaagatcc cgaaagggac aattttggcc aaatttgggt 1740 tttgtttttg ttttttgttt tttgtttttt gtttttattt ttattttatt tatttttatt 1800 tattttattt tatttttgtt tttattttat gtttttgttg tttttgttat tttgttattt 1860 attaagcaca acacacagaa agcaaacttt aattaaacac acttattaaa atttaacaca 1920 ctaagcaagc acaagcaata aagataaaga aagctttata tatttatagg cttttttata 1980 atttaactta cagctgcttt taagcaagtt ctgtgagttt tgcctgtttt ttaaccccaa 2040 acatttcata gaacttgtta agagtttcgc tgtaatgttc catagcaata cttcctttag 2100 cattaggatt gctggagcta agtatagcag catactcttt ccccttcttc acctgatctt 2160 cattcatttc aaatgctttg cttttcagca cagtgcaaac ttttcctaag gcttccctgg 2220 tgtcatactt ctttgggtcg atcccgaggt ccttgtattt tgcatcctga tatatagcca 2280 agacaacact gatcatctca aagctatcaa ctgaagcaat aagaggtaag ctacctccta 2340 gcattatggc aagcctcaca gactttgcat catcaagagg taatccatag gcttgaatca 2400 aagggtggga agcaatctta gatttgatag tattgagatt ctcagaattc ccagtttcct 2460 caacaagcct gaccctgatc aagctatcaa gccttctgaa ggtcatgtca gtggctccaa 2520 ttctgtctga agttttcttt atggtaattc taccaaaagt aaaatcactt tgcttaataa 2580 ccttcattat gctctgacga ttcttcagga atgtcagaca tgaaataatg ctcatctttt 2640 tgatctggtc aaggttttcc agacaaaaag tcttgaagtt gaatgctacc agattctgat 2700 cttcctcaaa ctcaaggtct ttgccttgtg tcaacaaagc aacaatgctt tccttagtga 2760 gcttaacctt agacatgatg atcgtagaag ttgttatatg ctttgaccgt atgcaactca 2820 aggtgcaaaa gtgcaactct gtatcccgca gtcgtttctt agggttttaa tgtgatgatt 2880 tgtaagactg agtgttaagg tttgaataaa attgacacaa ttgctct 2927 //